Wall clock time and date at job start Mon Mar 30 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38836 * 119.66677 * 2 1 4 4 C 1.36628 * 120.52509 * 179.97438 * 3 2 1 5 5 C 1.39625 * 119.76527 * 0.02562 * 4 3 2 6 6 C 1.40670 * 119.93261 * 359.97438 * 5 4 3 7 7 C 1.37752 * 119.66915 * 179.97438 * 2 1 3 8 8 N 1.37691 * 107.15839 * 179.97438 * 6 5 4 9 9 H 0.96993 * 125.06094 * 179.97438 * 8 6 5 10 10 C 1.36832 * 109.87271 * 359.73838 * 8 6 5 11 11 C 1.34236 * 109.93127 * 0.44170 * 10 8 6 12 12 C 1.50701 * 126.50198 * 179.82934 * 11 10 8 13 13 H 1.09004 * 109.47172 * 179.69207 * 12 11 10 14 14 C 1.50697 * 109.47544 * 299.69534 * 12 11 10 15 15 H 1.08004 * 119.99480 * 25.09629 * 14 12 11 16 16 C 1.37870 * 120.00096 * 205.09867 * 14 12 11 17 17 N 1.31509 * 120.00113 * 355.16293 * 16 14 12 18 18 Si 1.86801 * 119.99798 * 175.16338 * 16 14 12 19 19 H 1.48498 * 109.47202 * 269.99962 * 18 16 14 20 20 H 1.48499 * 109.47314 * 29.99885 * 18 16 14 21 21 H 1.48507 * 109.47167 * 149.99920 * 18 16 14 22 22 C 1.53007 * 109.46681 * 59.69737 * 12 11 10 23 23 N 1.46893 * 109.47421 * 65.22118 * 22 12 11 24 24 H 1.08999 * 109.47367 * 89.99772 * 1 2 3 25 25 H 1.09007 * 109.46786 * 209.99939 * 1 2 3 26 26 H 1.08995 * 109.46863 * 329.99857 * 1 2 3 27 27 H 1.07991 * 119.73354 * 359.96014 * 3 2 1 28 28 H 1.07998 * 120.10990 * 179.97438 * 4 3 2 29 29 H 1.08002 * 120.10918 * 0.03844 * 7 2 1 30 30 H 1.07997 * 125.03198 * 180.30604 * 10 8 6 31 31 H 0.97000 * 120.00246 * 354.50164 * 17 16 14 32 32 H 1.09006 * 109.46829 * 185.22322 * 22 12 11 33 33 H 1.08999 * 109.46972 * 305.22072 * 22 12 11 34 34 H 1.00900 * 111.00360 * 56.04425 * 23 22 12 35 35 H 1.00898 * 111.00500 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.2064 0.0000 4 6 3.5603 1.2268 0.0005 5 6 4.2715 0.0253 0.0005 6 6 3.5800 -1.1997 0.0005 7 6 2.1888 -1.1969 0.0005 8 7 4.5261 -2.2001 -0.0001 9 1 4.3320 -3.1505 0.0002 10 6 5.7806 -1.6540 -0.0063 11 6 5.6965 -0.3143 -0.0002 12 6 6.8494 0.6563 -0.0004 13 1 6.4655 1.6765 0.0000 14 6 7.6917 0.4361 1.2297 15 1 7.6949 -0.5280 1.7165 16 6 8.4583 1.4654 1.7335 17 7 8.5292 2.6092 1.0884 18 14 9.3961 1.2351 3.3325 19 1 8.5388 1.6469 4.4730 20 1 9.7706 -0.1937 3.4855 21 1 10.6247 2.0692 3.3104 22 6 7.7035 0.4333 -1.2501 23 7 6.9189 0.7687 -2.4458 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3633 0.8899 0.5138 27 1 1.6444 2.1359 -0.0007 28 1 4.0880 2.1691 0.0001 29 1 1.6452 -2.1302 0.0003 30 1 6.7020 -2.2174 -0.0128 31 1 8.1081 2.7030 0.2196 32 1 8.5870 1.0702 -1.2048 33 1 8.0108 -0.6113 -1.2985 34 1 6.5677 1.7133 -2.3946 35 1 7.4612 0.6292 -3.2851 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261098603.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:59 Heat of formation + Delta-G solvation = 18.340381 kcal Electronic energy + Delta-G solvation = -17245.105025 eV Core-core repulsion = 14627.531933 eV Total energy + Delta-G solvation = -2617.573091 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.00935 -38.28488 -37.18649 -34.25768 -33.29734 -31.80780 -30.51715 -28.68771 -26.65836 -25.73287 -23.58993 -23.23632 -21.66999 -20.22691 -18.76898 -18.46605 -17.07937 -16.39827 -15.97894 -15.64300 -15.41969 -15.21824 -15.10701 -14.82884 -14.56743 -14.12826 -13.70937 -13.55114 -13.10430 -12.83398 -12.78122 -12.50236 -12.26804 -11.99747 -11.94520 -11.75252 -11.47236 -10.79755 -10.50254 -10.13147 -9.49908 -8.90021 -8.61121 -8.20298 -6.27560 0.33141 0.81780 1.53275 1.60926 1.78472 2.05690 2.42342 2.59525 3.07132 3.24426 3.90486 3.94368 4.07339 4.15505 4.37968 4.44522 4.56472 4.63662 4.70969 4.78227 4.94320 4.96575 5.00274 5.08997 5.18043 5.30548 5.37535 5.59882 5.75367 5.80117 5.95035 6.10019 6.12780 6.26886 6.35817 6.42049 6.64276 6.75907 6.94555 7.50836 8.81522 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024884 B = 0.006758 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.971642 B = 4142.169161 C = 4317.548129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.076 4.076 3 C -0.156 4.156 4 C -0.086 4.086 5 C -0.140 4.140 6 C 0.087 3.913 7 C -0.139 4.139 8 N -0.586 5.586 9 H 0.426 0.574 10 C 0.026 3.974 11 C -0.121 4.121 12 C 0.102 3.898 13 H -0.002 1.002 14 C -0.589 4.589 15 H 0.046 0.954 16 C -0.030 4.030 17 N -0.939 5.939 18 Si 1.111 2.889 19 H -0.281 1.281 20 H -0.269 1.269 21 H -0.285 1.285 22 C 0.089 3.911 23 N -0.842 5.842 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.136 0.864 28 H 0.096 0.904 29 H 0.145 0.855 30 H 0.170 0.830 31 H 0.257 0.743 32 H -0.006 1.006 33 H 0.056 0.944 34 H 0.332 0.668 35 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.228 -8.165 -3.438 15.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.078 4.078 3 C -0.176 4.176 4 C -0.105 4.105 5 C -0.145 4.145 6 C -0.021 4.021 7 C -0.160 4.160 8 N -0.191 5.191 9 H 0.265 0.735 10 C -0.098 4.098 11 C -0.127 4.127 12 C 0.082 3.918 13 H 0.016 0.984 14 C -0.628 4.628 15 H 0.065 0.935 16 C -0.228 4.228 17 N -0.577 5.577 18 Si 0.934 3.066 19 H -0.207 1.207 20 H -0.193 1.193 21 H -0.211 1.211 22 C -0.042 4.042 23 N -0.371 5.371 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.154 0.846 28 H 0.114 0.886 29 H 0.162 0.838 30 H 0.187 0.813 31 H 0.068 0.932 32 H 0.012 0.988 33 H 0.075 0.925 34 H 0.144 0.856 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.724 -8.149 -2.110 14.433 hybrid contribution 0.331 -0.016 -1.358 1.397 sum -11.393 -8.165 -3.468 14.439 Atomic orbital electron populations 1.20761 0.88321 1.03641 1.03118 1.19896 0.97457 0.91495 0.98914 1.20682 0.92736 0.98784 1.05361 1.20338 0.94806 0.95919 0.99409 1.19513 0.93529 0.93739 1.07731 1.18480 0.91585 0.87876 1.04149 1.20114 0.88891 0.99346 1.07619 1.41461 1.03658 1.07936 1.66085 0.73528 1.21431 0.87805 0.93604 1.07006 1.20489 0.92158 0.94028 1.06063 1.17201 0.89927 0.92058 0.92600 0.98373 1.22288 1.27682 1.00025 1.12761 0.93526 1.27120 0.97197 0.92360 1.06115 1.70867 1.44779 1.26606 1.15421 0.83005 0.75366 0.76293 0.71932 1.20699 1.19332 1.21063 1.21815 0.93636 0.98340 0.90429 1.58816 1.42798 1.31200 1.04257 0.90168 0.90388 0.90721 0.84577 0.88565 0.83772 0.81279 0.93239 0.98777 0.92534 0.85642 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.84 9.99 71.24 0.71 -1.13 16 2 C -0.08 -2.12 5.88 -19.84 -0.12 -2.23 16 3 C -0.16 -5.03 9.62 22.04 0.21 -4.82 16 4 C -0.09 -3.49 10.05 22.23 0.22 -3.26 16 5 C -0.14 -6.07 6.35 -20.20 -0.13 -6.20 16 6 C 0.09 3.15 7.28 39.03 0.28 3.43 16 7 C -0.14 -4.05 9.71 22.37 0.22 -3.83 16 8 N -0.59 -18.99 6.07 -187.61 -1.14 -20.12 16 9 H 0.43 9.93 8.96 -92.71 -0.83 9.10 16 10 C 0.03 1.01 11.03 83.00 0.92 1.92 16 11 C -0.12 -5.57 4.77 -18.63 -0.09 -5.66 16 12 C 0.10 5.24 1.92 -12.28 -0.02 5.22 16 13 H 0.00 -0.11 7.08 -2.39 -0.02 -0.13 16 14 C -0.59 -33.04 8.21 25.60 0.21 -32.83 16 15 H 0.05 2.59 7.65 -2.91 -0.02 2.57 16 16 C -0.03 -1.72 5.45 84.65 0.46 -1.26 16 17 N -0.94 -57.30 13.57 21.44 0.29 -57.00 16 18 Si 1.11 50.82 29.91 68.60 2.05 52.87 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 22 C 0.09 4.10 5.94 86.31 0.51 4.61 16 23 N -0.84 -32.83 9.34 -186.72 -1.74 -34.58 16 24 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.08 1.17 8.08 -2.38 -0.02 1.15 16 26 H 0.07 1.21 8.08 -2.39 -0.02 1.19 16 27 H 0.14 3.61 8.06 -2.92 -0.02 3.58 16 28 H 0.10 4.11 8.06 -2.91 -0.02 4.09 16 29 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 30 H 0.17 6.05 8.06 -2.91 -0.02 6.03 16 31 H 0.26 15.82 6.26 -92.71 -0.58 15.24 16 32 H -0.01 -0.31 7.61 -2.38 -0.02 -0.32 16 33 H 0.06 2.52 7.87 -2.39 -0.02 2.50 16 34 H 0.33 13.01 8.99 -89.69 -0.81 12.20 16 35 H 0.34 11.08 9.08 -89.70 -0.81 10.27 16 Total: -1.00 -69.27 296.42 1.71 -67.56 By element: Atomic # 1 Polarization: 38.45 SS G_CDS: -1.14 Total: 37.31 kcal Atomic # 6 Polarization: -49.43 SS G_CDS: 3.39 Total: -46.04 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -2.59 Total: -111.71 kcal Atomic # 14 Polarization: 50.82 SS G_CDS: 2.05 Total: 52.87 kcal Total: -69.27 1.71 -67.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261098603.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.902 kcal (2) G-P(sol) polarization free energy of solvation -69.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds