Wall clock time and date at job start Mon Mar 30 2020 06:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37789 * 119.66689 * 2 1 4 4 C 1.39083 * 119.77629 * 179.77747 * 3 2 1 5 5 N 1.37695 * 133.51673 * 180.12675 * 4 3 2 6 6 H 0.96995 * 125.05763 * 0.30522 * 5 4 3 7 7 C 1.36827 * 109.87603 * 180.29000 * 5 4 3 8 8 C 1.34236 * 109.93865 * 359.97438 * 7 5 4 9 9 C 1.50705 * 126.50052 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.47067 * 144.97302 * 9 8 7 11 11 N 1.46897 * 109.46840 * 24.97864 * 9 8 7 12 12 C 1.50694 * 109.47444 * 264.97751 * 9 8 7 13 13 H 1.08008 * 119.99734 * 0.02562 * 12 9 8 14 14 C 1.37873 * 120.00262 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99948 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 120.00144 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.47414 * 89.99819 * 16 14 12 18 18 H 1.48512 * 109.47028 * 210.00121 * 16 14 12 19 19 H 1.48502 * 109.47131 * 329.99486 * 16 14 12 20 20 C 1.40709 * 119.33264 * 0.43932 * 4 3 2 21 21 C 1.39591 * 119.92756 * 359.78282 * 20 4 3 22 22 C 1.50704 * 120.11261 * 179.97438 * 21 20 4 23 23 C 1.36655 * 119.76796 * 359.97438 * 21 20 4 24 24 H 1.09010 * 109.47272 * 269.77963 * 1 2 3 25 25 H 1.09004 * 109.47224 * 29.77823 * 1 2 3 26 26 H 1.08998 * 109.47531 * 149.78132 * 1 2 3 27 27 H 1.08002 * 120.10958 * 359.90021 * 3 2 1 28 28 H 1.08003 * 125.03267 * 180.02562 * 7 5 4 29 29 H 1.00902 * 111.00437 * 299.99844 * 11 9 8 30 30 H 1.00907 * 111.00599 * 63.95502 * 11 9 8 31 31 H 0.97005 * 120.00459 * 179.97438 * 15 14 12 32 32 H 1.09003 * 109.47263 * 89.99510 * 22 21 20 33 33 H 1.09003 * 109.47084 * 209.99441 * 22 21 20 34 34 H 1.08998 * 109.47408 * 329.99683 * 22 21 20 35 35 H 1.08003 * 119.73724 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1890 1.1973 0.0000 4 6 3.5798 1.1999 0.0047 5 7 4.5260 2.2003 0.0082 6 1 4.3320 3.1506 0.0120 7 6 5.7805 1.6540 0.0057 8 6 5.6964 0.3143 0.0013 9 6 6.8493 -0.6563 -0.0020 10 1 6.5853 -1.5360 0.5849 11 7 8.0324 -0.0131 0.5849 12 6 7.1534 -1.0703 -1.4187 13 1 6.5705 -0.6702 -2.2352 14 6 8.1765 -1.9589 -1.6727 15 7 8.8874 -2.4448 -0.6786 16 14 8.5540 -2.4715 -3.4288 17 1 9.5519 -1.5397 -4.0129 18 1 9.1026 -3.8515 -3.4346 19 1 7.3076 -2.4310 -4.2351 20 6 4.2714 -0.0254 0.0000 21 6 3.5603 -1.2266 -0.0047 22 6 4.2968 -2.5413 -0.0104 23 6 2.1939 -1.2060 -0.0042 24 1 -0.3634 -0.0040 1.0277 25 1 -0.3634 0.8920 -0.5104 26 1 -0.3634 -0.8880 -0.5172 27 1 1.6453 2.1305 -0.0016 28 1 6.7020 2.2173 0.0080 29 1 8.2974 0.8058 0.0585 30 1 7.8757 0.2158 1.5551 31 1 9.6070 -3.0703 -0.8572 32 1 4.4748 -2.8625 1.0159 33 1 3.6977 -3.2912 -0.5270 34 1 5.2506 -2.4213 -0.5241 35 1 1.6441 -2.1356 -0.0083 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261100866.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:52 Heat of formation + Delta-G solvation = 47.027665 kcal Electronic energy + Delta-G solvation = -17409.182513 eV Core-core repulsion = 14792.853396 eV Total energy + Delta-G solvation = -2616.329117 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.70907 -37.06086 -34.75852 -32.84084 -31.47439 -29.81773 -28.81782 -26.86178 -25.83816 -25.14439 -22.24621 -21.43699 -20.16745 -18.20614 -17.00463 -16.29789 -15.64917 -14.69851 -14.50330 -14.13748 -13.94496 -13.71290 -13.09932 -12.90880 -12.79560 -12.44385 -12.27465 -12.06284 -11.81034 -11.37432 -11.32361 -10.82149 -10.73490 -10.51769 -10.41577 -10.15301 -9.80028 -9.25916 -8.53587 -8.35217 -7.58768 -7.08162 -6.78779 -5.79866 -3.93747 1.65289 2.14550 3.37325 3.41077 3.44964 3.51585 3.68118 4.38584 4.56906 5.14527 5.24230 5.40780 5.47857 5.51870 5.66805 5.73283 5.86034 5.92702 6.00883 6.19925 6.28010 6.34503 6.39899 6.48623 6.60181 6.78388 6.95844 7.04354 7.29055 7.32820 7.51824 7.64840 7.80603 7.99461 8.09939 8.33861 8.74220 9.09437 9.24339 9.74066 11.23285 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.026521 B = 0.007380 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.513150 B = 3793.058349 C = 4281.971341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.070 4.070 3 C -0.153 4.153 4 C 0.099 3.901 5 N -0.603 5.603 6 H 0.405 0.595 7 C 0.000 4.000 8 C -0.135 4.135 9 C 0.280 3.720 10 H 0.051 0.949 11 N -0.811 5.811 12 C -0.521 4.521 13 H 0.051 0.949 14 C 0.084 3.916 15 N -0.848 5.848 16 Si 0.878 3.122 17 H -0.283 1.283 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.104 4.104 21 C -0.008 4.008 22 C -0.132 4.132 23 C -0.169 4.169 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.108 0.892 28 H 0.158 0.842 29 H 0.314 0.686 30 H 0.297 0.703 31 H 0.254 0.746 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.109 0.891 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.795 6.202 2.573 13.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.071 4.071 3 C -0.174 4.174 4 C -0.009 4.009 5 N -0.207 5.207 6 H 0.240 0.760 7 C -0.122 4.122 8 C -0.144 4.144 9 C 0.170 3.830 10 H 0.069 0.931 11 N -0.336 5.336 12 C -0.560 4.560 13 H 0.069 0.931 14 C -0.123 4.123 15 N -0.483 5.483 16 Si 0.706 3.294 17 H -0.209 1.209 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.110 4.110 21 C -0.008 4.008 22 C -0.188 4.188 23 C -0.189 4.189 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.126 0.874 28 H 0.175 0.825 29 H 0.126 0.874 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.193 5.492 2.470 12.710 hybrid contribution -0.470 1.219 -0.929 1.603 sum -11.663 6.711 1.541 13.544 Atomic orbital electron populations 1.20696 0.91778 1.02103 1.01652 1.19371 0.95030 0.92419 1.00264 1.19622 0.89915 0.97468 1.10408 1.18250 0.90493 0.88544 1.03598 1.41578 1.04822 1.07054 1.67213 0.75978 1.21358 0.86789 0.94198 1.09899 1.22434 0.94612 0.94285 1.03066 1.17726 0.80178 0.89388 0.95691 0.93144 1.59234 1.39665 1.31849 1.02866 1.20829 1.17117 1.26956 0.91135 0.93062 1.24935 0.95800 0.95637 0.95888 1.70102 1.19226 1.28996 1.29929 0.86845 0.78514 0.77779 0.86253 1.20875 1.21336 1.20047 1.19104 0.93404 0.91511 1.06940 1.19196 0.92706 0.94340 0.94598 1.21091 1.02900 0.92620 1.02216 1.20295 0.93405 0.96839 1.08329 0.91762 0.92231 0.91831 0.87359 0.82500 0.87446 0.89299 0.93559 0.91817 0.92719 0.87289 0.86795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.99 36.00 0.36 -0.83 16 2 C -0.07 -1.07 5.88 -104.58 -0.61 -1.68 16 3 C -0.15 -2.44 9.71 -39.43 -0.38 -2.82 16 4 C 0.10 1.81 7.28 -83.99 -0.61 1.20 16 5 N -0.60 -9.77 6.07 -10.65 -0.06 -9.83 16 6 H 0.41 4.98 8.96 -40.82 -0.37 4.61 16 7 C 0.00 0.00 11.10 -16.73 -0.19 -0.18 16 8 C -0.14 -2.92 5.36 -102.71 -0.55 -3.47 16 9 C 0.28 6.83 2.22 -70.02 -0.16 6.68 16 10 H 0.05 1.35 6.60 -51.93 -0.34 1.01 16 11 N -0.81 -18.65 8.29 -6.65 -0.06 -18.70 16 12 C -0.52 -14.09 7.55 -34.44 -0.26 -14.35 16 13 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 14 C 0.08 2.30 5.39 -17.82 -0.10 2.21 16 15 N -0.85 -24.27 12.77 55.43 0.71 -23.57 16 16 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.10 -2.16 6.14 -105.14 -0.65 -2.81 16 21 C -0.01 -0.15 5.87 -104.69 -0.61 -0.77 16 22 C -0.13 -2.54 9.19 36.01 0.33 -2.21 16 23 C -0.17 -2.85 9.26 -39.95 -0.37 -3.22 16 24 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 25 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 26 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 27 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 28 H 0.16 2.52 7.31 -52.48 -0.38 2.14 16 29 H 0.31 6.81 7.96 -39.29 -0.31 6.49 16 30 H 0.30 6.15 9.06 -39.29 -0.36 5.79 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.11 2.48 4.96 -51.93 -0.26 2.23 16 35 H 0.11 1.66 8.06 -52.48 -0.42 1.23 16 LS Contribution 290.48 15.07 4.38 4.38 Total: -1.00 -30.50 290.48 -8.36 -38.87 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -4.51 Total: 14.85 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -3.80 Total: -22.26 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.59 Total: -52.10 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.50 -8.36 -38.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261100866.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.893 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds