Wall clock time and date at job start Mon Mar 30 2020 06:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37789 * 119.66689 * 2 1 4 4 C 1.39083 * 119.77629 * 179.77747 * 3 2 1 5 5 N 1.37695 * 133.51673 * 180.12675 * 4 3 2 6 6 H 0.96995 * 125.05763 * 0.30522 * 5 4 3 7 7 C 1.36827 * 109.87603 * 180.29000 * 5 4 3 8 8 C 1.34236 * 109.93865 * 359.97438 * 7 5 4 9 9 C 1.50705 * 126.50052 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.47067 * 144.97302 * 9 8 7 11 11 N 1.46897 * 109.46840 * 24.97864 * 9 8 7 12 12 C 1.50694 * 109.47444 * 264.97751 * 9 8 7 13 13 H 1.08008 * 119.99734 * 0.02562 * 12 9 8 14 14 C 1.37873 * 120.00262 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99948 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 120.00144 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.47414 * 89.99819 * 16 14 12 18 18 H 1.48512 * 109.47028 * 210.00121 * 16 14 12 19 19 H 1.48502 * 109.47131 * 329.99486 * 16 14 12 20 20 C 1.40709 * 119.33264 * 0.43932 * 4 3 2 21 21 C 1.39591 * 119.92756 * 359.78282 * 20 4 3 22 22 C 1.50704 * 120.11261 * 179.97438 * 21 20 4 23 23 C 1.36655 * 119.76796 * 359.97438 * 21 20 4 24 24 H 1.09010 * 109.47272 * 269.77963 * 1 2 3 25 25 H 1.09004 * 109.47224 * 29.77823 * 1 2 3 26 26 H 1.08998 * 109.47531 * 149.78132 * 1 2 3 27 27 H 1.08002 * 120.10958 * 359.90021 * 3 2 1 28 28 H 1.08003 * 125.03267 * 180.02562 * 7 5 4 29 29 H 1.00902 * 111.00437 * 299.99844 * 11 9 8 30 30 H 1.00907 * 111.00599 * 63.95502 * 11 9 8 31 31 H 0.97005 * 120.00459 * 179.97438 * 15 14 12 32 32 H 1.09003 * 109.47263 * 89.99510 * 22 21 20 33 33 H 1.09003 * 109.47084 * 209.99441 * 22 21 20 34 34 H 1.08998 * 109.47408 * 329.99683 * 22 21 20 35 35 H 1.08003 * 119.73724 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1890 1.1973 0.0000 4 6 3.5798 1.1999 0.0047 5 7 4.5260 2.2003 0.0082 6 1 4.3320 3.1506 0.0120 7 6 5.7805 1.6540 0.0057 8 6 5.6964 0.3143 0.0013 9 6 6.8493 -0.6563 -0.0020 10 1 6.5853 -1.5360 0.5849 11 7 8.0324 -0.0131 0.5849 12 6 7.1534 -1.0703 -1.4187 13 1 6.5705 -0.6702 -2.2352 14 6 8.1765 -1.9589 -1.6727 15 7 8.8874 -2.4448 -0.6786 16 14 8.5540 -2.4715 -3.4288 17 1 9.5519 -1.5397 -4.0129 18 1 9.1026 -3.8515 -3.4346 19 1 7.3076 -2.4310 -4.2351 20 6 4.2714 -0.0254 0.0000 21 6 3.5603 -1.2266 -0.0047 22 6 4.2968 -2.5413 -0.0104 23 6 2.1939 -1.2060 -0.0042 24 1 -0.3634 -0.0040 1.0277 25 1 -0.3634 0.8920 -0.5104 26 1 -0.3634 -0.8880 -0.5172 27 1 1.6453 2.1305 -0.0016 28 1 6.7020 2.2173 0.0080 29 1 8.2974 0.8058 0.0585 30 1 7.8757 0.2158 1.5551 31 1 9.6070 -3.0703 -0.8572 32 1 4.4748 -2.8625 1.0159 33 1 3.6977 -3.2912 -0.5270 34 1 5.2506 -2.4213 -0.5241 35 1 1.6441 -2.1356 -0.0083 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261100866.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:52 Heat of formation + Delta-G solvation = 27.181023 kcal Electronic energy + Delta-G solvation = -17410.043128 eV Core-core repulsion = 14792.853396 eV Total energy + Delta-G solvation = -2617.189732 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.09104 -38.37110 -36.55351 -34.26441 -33.41748 -31.09024 -30.33826 -28.37660 -27.60079 -26.48515 -24.07383 -22.82844 -21.44952 -19.78889 -18.37230 -18.34371 -17.00911 -16.50325 -16.02665 -15.83691 -15.41119 -15.04655 -14.54421 -14.21933 -14.15822 -14.07176 -13.86692 -13.51339 -13.07842 -12.94408 -12.70822 -12.67573 -12.57102 -12.12598 -11.75528 -11.62806 -11.59597 -11.22174 -10.49271 -10.04647 -8.93205 -8.86529 -8.26773 -7.87055 -6.09015 0.30974 0.80547 1.42725 1.44496 1.53405 1.96091 2.38849 2.52636 3.02858 3.31866 3.92587 4.08439 4.13021 4.35301 4.45401 4.52579 4.58024 4.71045 4.82165 4.87637 4.93840 4.94933 4.97348 5.15330 5.19339 5.33591 5.48900 5.60013 5.78524 5.82947 5.87044 6.01461 6.05457 6.34306 6.40223 6.76519 6.91977 7.21476 7.36723 7.61856 9.12264 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.026521 B = 0.007380 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.513150 B = 3793.058349 C = 4281.971341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.069 4.069 3 C -0.150 4.150 4 C 0.088 3.912 5 N -0.586 5.586 6 H 0.426 0.574 7 C 0.021 3.979 8 C -0.183 4.183 9 C 0.293 3.707 10 H 0.014 0.986 11 N -0.821 5.821 12 C -0.523 4.523 13 H 0.033 0.967 14 C 0.039 3.961 15 N -0.878 5.878 16 Si 0.936 3.064 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.277 1.277 20 C -0.142 4.142 21 C -0.043 4.043 22 C -0.123 4.123 23 C -0.166 4.166 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.143 0.857 28 H 0.179 0.821 29 H 0.322 0.678 30 H 0.310 0.690 31 H 0.254 0.746 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.053 7.784 2.179 16.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.071 4.071 3 C -0.171 4.171 4 C -0.021 4.021 5 N -0.191 5.191 6 H 0.265 0.735 7 C -0.103 4.103 8 C -0.192 4.192 9 C 0.183 3.817 10 H 0.032 0.968 11 N -0.347 5.347 12 C -0.562 4.562 13 H 0.052 0.948 14 C -0.164 4.164 15 N -0.515 5.515 16 Si 0.762 3.238 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.202 1.202 20 C -0.147 4.147 21 C -0.043 4.043 22 C -0.179 4.179 23 C -0.185 4.185 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.160 0.840 28 H 0.196 0.804 29 H 0.134 0.866 30 H 0.121 0.879 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.477 7.110 2.073 15.377 hybrid contribution 0.117 0.765 -0.769 1.091 sum -13.360 7.875 1.303 15.563 Atomic orbital electron populations 1.20764 0.88395 1.03601 1.03114 1.19890 0.97405 0.91514 0.98257 1.20062 0.88952 0.99237 1.08847 1.18532 0.91622 0.87962 1.03934 1.41482 1.03686 1.07965 1.65974 0.73451 1.21554 0.88274 0.93375 1.07145 1.22109 0.94489 0.95240 1.07319 1.17221 0.81693 0.89249 0.93561 0.96849 1.59031 1.39660 1.32285 1.03766 1.20989 1.16428 1.26677 0.92153 0.94842 1.25553 0.95863 0.95794 0.99167 1.70215 1.19857 1.29841 1.31583 0.85936 0.78084 0.77541 0.82193 1.20356 1.20893 1.20193 1.19391 0.93454 0.93258 1.08606 1.19363 0.94085 0.93815 0.97080 1.20919 1.01292 0.93925 1.01785 1.20612 0.92391 0.98723 1.06822 0.90138 0.90438 0.90745 0.83965 0.80376 0.86625 0.87930 0.93724 0.92008 0.90802 0.91392 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.85 9.99 71.23 0.71 -1.13 16 2 C -0.07 -1.91 5.88 -19.84 -0.12 -2.03 16 3 C -0.15 -4.30 9.71 22.37 0.22 -4.08 16 4 C 0.09 3.06 7.28 39.03 0.28 3.35 16 5 N -0.59 -17.77 6.07 -187.61 -1.14 -18.91 16 6 H 0.43 9.14 8.96 -92.71 -0.83 8.31 16 7 C 0.02 0.76 11.10 83.00 0.92 1.68 16 8 C -0.18 -8.06 5.36 -18.63 -0.10 -8.16 16 9 C 0.29 14.92 2.22 43.42 0.10 15.01 16 10 H 0.01 0.78 6.60 -2.39 -0.02 0.77 16 11 N -0.82 -38.70 8.29 -174.96 -1.45 -40.15 16 12 C -0.52 -29.36 7.55 25.60 0.19 -29.16 16 13 H 0.03 1.95 7.74 -2.91 -0.02 1.92 16 14 C 0.04 2.23 5.39 84.65 0.46 2.68 16 15 N -0.88 -51.83 12.77 21.45 0.27 -51.56 16 16 Si 0.94 44.74 29.54 68.60 2.03 46.76 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 20 C -0.14 -5.97 6.14 -20.20 -0.12 -6.09 16 21 C -0.04 -1.70 5.87 -19.91 -0.12 -1.82 16 22 C -0.12 -4.97 9.19 71.24 0.65 -4.31 16 23 C -0.17 -5.34 9.26 22.03 0.20 -5.13 16 24 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.08 1.16 8.08 -2.38 -0.02 1.14 16 26 H 0.07 1.21 8.08 -2.39 -0.02 1.19 16 27 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 28 H 0.18 5.45 7.31 -2.91 -0.02 5.43 16 29 H 0.32 14.08 7.96 -89.69 -0.71 13.36 16 30 H 0.31 13.12 9.06 -89.69 -0.81 12.30 16 31 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 32 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.07 2.55 8.08 -2.39 -0.02 2.54 16 34 H 0.07 3.32 4.96 -2.39 -0.01 3.31 16 35 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -67.99 290.48 1.77 -66.22 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: -1.22 Total: 36.84 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 3.28 Total: -39.21 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -2.32 Total: -110.62 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -67.99 1.77 -66.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261100866.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.404 kcal (2) G-P(sol) polarization free energy of solvation -67.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds