Wall clock time and date at job start Mon Mar 30 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37841 * 126.52246 * 2 1 4 4 C 1.45564 * 135.78794 * 0.05303 * 3 2 1 5 5 C 1.35176 * 119.44281 * 179.97438 * 4 3 2 6 6 C 1.45987 * 120.80738 * 0.02562 * 5 4 3 7 7 C 1.40962 * 119.42769 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00147 * 154.55023 * 7 6 5 9 9 C 1.39861 * 119.99737 * 334.55407 * 7 6 5 10 10 N 1.30886 * 119.99836 * 342.26269 * 9 7 6 11 11 Si 1.86803 * 119.99751 * 162.27069 * 9 7 6 12 12 H 1.48504 * 109.46926 * 59.99997 * 11 9 7 13 13 H 1.48497 * 109.46852 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47103 * 299.99653 * 11 9 7 15 15 C 1.39810 * 121.15020 * 359.97438 * 6 5 4 16 16 C 1.40076 * 119.86834 * 0.02562 * 15 6 5 17 17 N 1.32419 * 135.16599 * 180.31500 * 16 15 6 18 18 N 1.28474 * 110.69272 * 180.09890 * 17 16 15 19 19 C 1.46502 * 123.97953 * 179.87455 * 18 17 16 20 20 C 1.53002 * 109.47072 * 59.70442 * 19 18 17 21 21 C 1.53001 * 109.47120 * 299.70270 * 19 18 17 22 22 H 1.09004 * 109.47303 * 269.95760 * 1 2 3 23 23 H 1.08999 * 109.47403 * 29.96125 * 1 2 3 24 24 H 1.08998 * 109.46917 * 149.96477 * 1 2 3 25 25 H 1.08003 * 120.27497 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.59759 * 179.97438 * 5 4 3 27 27 H 0.97003 * 119.99796 * 179.97438 * 10 9 7 28 28 H 1.07999 * 120.06416 * 179.97438 * 15 6 5 29 29 H 1.08998 * 109.47324 * 179.70541 * 19 18 17 30 30 H 1.08994 * 109.47444 * 179.97438 * 20 19 18 31 31 H 1.09001 * 109.46647 * 300.00035 * 20 19 18 32 32 H 1.09003 * 109.46891 * 59.99898 * 20 19 18 33 33 H 1.09000 * 109.47112 * 60.00386 * 21 19 18 34 34 H 1.09007 * 109.46956 * 179.97438 * 21 19 18 35 35 H 1.08997 * 109.47309 * 299.99623 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3273 1.1077 0.0000 4 6 2.1325 2.5503 0.0009 5 6 3.2102 3.3663 0.0011 6 6 4.5632 2.8180 -0.0002 7 6 5.6662 3.6957 -0.0005 8 1 6.6149 3.3709 0.4005 9 6 5.5319 4.9872 -0.5201 10 7 4.5259 5.2749 -1.3065 11 14 6.7884 6.3015 -0.0920 12 1 8.1331 5.8686 -0.5498 13 1 6.4228 7.5738 -0.7649 14 1 6.8085 6.5068 1.3786 15 6 4.7841 1.4374 -0.0011 16 6 3.6948 0.5567 -0.0013 17 7 3.5517 -0.7597 0.0030 18 7 2.3078 -1.0811 -0.0018 19 6 1.8189 -2.4621 -0.0016 20 6 2.3293 -3.1836 1.2474 21 6 2.3279 -3.1836 -1.2511 22 1 -0.3634 -0.0008 1.0277 23 1 -0.3634 0.8903 -0.5132 24 1 -0.3633 -0.8897 -0.5144 25 1 1.1353 2.9651 0.0015 26 1 3.0686 4.4370 0.0014 27 1 4.4326 6.1708 -1.6666 28 1 5.7925 1.0508 -0.0025 29 1 0.7289 -2.4617 -0.0010 30 1 1.9652 -4.2109 1.2479 31 1 3.4193 -3.1840 1.2468 32 1 1.9666 -2.6695 2.1376 33 1 3.4179 -3.1841 -1.2517 34 1 1.9645 -4.2113 -1.2507 35 1 1.9642 -2.6697 -2.1409 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261112498.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:27 Heat of formation + Delta-G solvation = 74.509528 kcal Electronic energy + Delta-G solvation = -17124.802335 eV Core-core repulsion = 14509.664920 eV Total energy + Delta-G solvation = -2615.137414 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.18265 -36.39840 -34.75157 -32.86266 -32.06869 -29.31945 -28.83837 -27.21179 -25.84159 -25.63652 -22.40085 -21.10359 -19.92898 -18.45091 -17.01005 -16.18619 -15.59025 -15.10547 -15.02135 -14.13086 -13.88480 -13.17321 -12.98098 -12.67278 -12.49173 -12.44147 -12.26196 -12.09296 -11.93391 -11.45164 -11.26618 -11.14263 -10.99515 -10.77049 -10.68329 -10.29070 -9.93669 -9.77339 -9.13827 -8.73847 -8.57640 -7.19473 -6.89202 -6.39220 -4.28591 2.14828 2.93097 3.06548 3.10368 3.35573 3.39073 3.83995 3.92044 4.60598 4.71334 5.04350 5.08129 5.29306 5.48880 5.56426 5.63191 5.68118 5.73782 5.82304 5.86039 5.94001 6.10828 6.23527 6.24698 6.36295 6.72164 6.82505 6.94302 7.05090 7.17427 7.59086 7.78172 7.93278 8.04200 8.21460 8.25684 8.52620 8.89689 8.98365 9.47407 10.12999 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.043461 B = 0.005555 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.094715 B = 5039.401404 C = 5422.560561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.003 4.003 3 C -0.201 4.201 4 C -0.107 4.107 5 C -0.088 4.088 6 C 0.133 3.867 7 C -0.448 4.448 8 H 0.082 0.918 9 C 0.075 3.925 10 N -0.793 5.793 11 Si 0.911 3.089 12 H -0.264 1.264 13 H -0.278 1.278 14 H -0.263 1.263 15 C -0.287 4.287 16 C 0.131 3.869 17 N -0.369 5.369 18 N -0.277 5.277 19 C 0.148 3.852 20 C -0.157 4.157 21 C -0.158 4.158 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.283 0.717 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.434 -7.975 1.690 11.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.134 4.134 3 C -0.211 4.211 4 C -0.127 4.127 5 C -0.107 4.107 6 C 0.126 3.874 7 C -0.478 4.478 8 H 0.100 0.900 9 C -0.143 4.143 10 N -0.419 5.419 11 Si 0.736 3.264 12 H -0.189 1.189 13 H -0.203 1.203 14 H -0.187 1.187 15 C -0.312 4.312 16 C -0.015 4.015 17 N -0.201 5.201 18 N -0.059 5.059 19 C 0.045 3.955 20 C -0.215 4.215 21 C -0.216 4.216 22 H 0.083 0.917 23 H 0.094 0.906 24 H 0.075 0.925 25 H 0.114 0.886 26 H 0.142 0.858 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.974 -9.030 1.538 11.513 hybrid contribution 0.045 1.370 0.031 1.371 sum -6.929 -7.661 1.569 10.448 Atomic orbital electron populations 1.20142 0.88549 1.02351 1.01790 1.20845 0.93298 0.87473 1.11749 1.20164 0.93186 0.93038 1.14724 1.20707 0.97180 0.89553 1.05238 1.22206 0.91943 0.99147 0.97425 1.18212 0.91676 0.90812 0.86652 1.19545 0.97999 0.95975 1.34279 0.89981 1.25986 0.96203 0.99552 0.92548 1.69845 1.28337 1.22101 1.21568 0.86309 0.81125 0.79026 0.79972 1.18863 1.20313 1.18710 1.19361 0.93773 0.90516 1.27588 1.20434 0.93987 0.88254 0.98794 1.73454 0.98155 1.15646 1.32893 1.44898 1.03278 1.05074 1.52657 1.21252 0.98548 0.78531 0.97127 1.22084 1.03377 0.99556 0.96498 1.22092 1.03413 0.99560 0.96533 0.91687 0.90561 0.92492 0.88573 0.85802 0.90614 0.88960 0.88729 0.91335 0.90870 0.92296 0.90868 0.91326 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 9.90 36.00 0.36 -0.65 16 2 C 0.00 -0.07 6.98 -81.55 -0.57 -0.64 16 3 C -0.20 -4.87 6.54 -103.38 -0.68 -5.55 16 4 C -0.11 -2.53 10.26 -37.75 -0.39 -2.92 16 5 C -0.09 -2.26 8.70 -37.57 -0.33 -2.59 16 6 C 0.13 3.65 5.67 -105.17 -0.60 3.05 16 7 C -0.45 -11.96 8.98 -37.94 -0.34 -12.30 16 8 H 0.08 2.12 7.90 -52.49 -0.41 1.71 16 9 C 0.08 1.87 5.12 -17.35 -0.09 1.78 16 10 N -0.79 -20.03 10.93 55.54 0.61 -19.43 16 11 Si 0.91 18.38 29.59 -169.99 -5.03 13.35 16 12 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 13 H -0.28 -5.43 7.11 56.52 0.40 -5.02 16 14 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 15 C -0.29 -7.93 9.80 -38.30 -0.38 -8.30 16 16 C 0.13 3.45 7.50 -83.18 -0.62 2.83 16 17 N -0.37 -8.80 11.51 33.17 0.38 -8.42 16 18 N -0.28 -5.51 3.02 -50.15 -0.15 -5.67 16 19 C 0.15 2.10 3.50 -67.93 -0.24 1.86 16 20 C -0.16 -2.01 9.34 37.16 0.35 -1.66 16 21 C -0.16 -2.05 9.35 37.16 0.35 -1.70 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.06 0.67 6.96 -51.93 -0.36 0.31 16 25 H 0.10 1.97 8.06 -52.48 -0.42 1.55 16 26 H 0.12 3.16 6.22 -52.48 -0.33 2.84 16 27 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 28 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 29 H 0.09 1.10 6.43 -51.93 -0.33 0.76 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.08 8.12 -51.93 -0.42 0.65 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 295.03 15.07 4.45 4.45 Total: -1.00 -30.60 295.03 -7.71 -38.32 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -4.80 Total: 4.18 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: -3.17 Total: -26.78 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.84 Total: -33.51 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.60 -7.71 -38.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112498.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.826 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds