Wall clock time and date at job start Mon Mar 30 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39033 * 126.13711 * 2 1 4 4 C 1.40140 * 134.27214 * 359.95724 * 3 2 1 5 5 C 1.39776 * 119.86672 * 180.35117 * 4 3 2 6 6 C 1.41002 * 119.51975 * 180.02562 * 5 4 3 7 7 H 1.07997 * 120.00145 * 334.50267 * 6 5 4 8 8 C 1.39770 * 120.00207 * 154.50722 * 6 5 4 9 9 N 1.30954 * 119.99753 * 342.33007 * 8 6 5 10 10 Si 1.86800 * 120.00154 * 162.32951 * 8 6 5 11 11 H 1.48500 * 109.47144 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47236 * 120.00090 * 10 8 6 13 13 H 1.48512 * 109.47044 * 240.00046 * 10 8 6 14 14 C 1.45976 * 120.96479 * 359.97438 * 5 4 3 15 15 C 1.35056 * 120.92997 * 359.97438 * 14 5 4 16 16 C 1.46015 * 119.61797 * 0.02562 * 15 14 5 17 17 N 1.31773 * 134.02263 * 179.97438 * 16 15 14 18 18 N 1.34002 * 126.14167 * 179.82011 * 2 1 3 19 19 C 1.46503 * 124.99288 * 359.97438 * 18 2 1 20 20 C 1.52999 * 109.47214 * 239.72440 * 19 18 2 21 21 C 1.52996 * 109.46848 * 119.72356 * 19 18 2 22 22 H 1.09001 * 109.47114 * 270.18435 * 1 2 3 23 23 H 1.09003 * 109.47328 * 30.18391 * 1 2 3 24 24 H 1.09003 * 109.47059 * 150.18224 * 1 2 3 25 25 H 1.08004 * 120.06597 * 0.36925 * 4 3 2 26 26 H 0.97004 * 119.99414 * 179.97438 * 9 8 6 27 27 H 1.08000 * 119.53473 * 180.02562 * 14 5 4 28 28 H 1.07995 * 120.19200 * 180.02562 * 15 14 5 29 29 H 1.08995 * 109.47007 * 359.72520 * 19 18 2 30 30 H 1.09005 * 109.47446 * 59.99701 * 20 19 18 31 31 H 1.09000 * 109.47262 * 179.97438 * 20 19 18 32 32 H 1.09006 * 109.46906 * 300.00300 * 20 19 18 33 33 H 1.09005 * 109.47172 * 60.00369 * 21 19 18 34 34 H 1.09000 * 109.46811 * 179.97438 * 21 19 18 35 35 H 1.08997 * 109.47376 * 299.99654 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3270 1.1228 0.0000 4 6 2.0935 2.5047 -0.0007 5 6 3.1726 3.3929 -0.0079 6 6 2.9293 4.7818 -0.0081 7 1 2.0023 5.1676 -0.4058 8 6 3.8878 5.6593 0.5064 9 7 4.8359 5.2078 1.2888 10 14 3.8165 7.4761 0.0780 11 1 2.6584 7.7287 -0.8166 12 1 3.6646 8.2725 1.3221 13 1 5.0704 7.8714 -0.6128 14 6 4.5480 2.9038 -0.0141 15 6 4.8138 1.5796 -0.0126 16 6 3.7114 0.6223 -0.0052 17 7 3.6412 -0.6936 -0.0024 18 7 2.2974 -1.0821 0.0034 19 6 1.8237 -2.4685 0.0083 20 6 2.3474 -3.1820 1.2563 21 6 2.3351 -3.1865 -1.2422 22 1 -0.3633 0.0033 1.0277 23 1 -0.3634 0.8883 -0.5167 24 1 -0.3633 -0.8916 -0.5110 25 1 1.0817 2.8825 0.0045 26 1 5.5014 5.8168 1.6456 27 1 5.3645 3.6107 -0.0192 28 1 5.8359 1.2309 -0.0168 29 1 0.7338 -2.4800 0.0136 30 1 1.9831 -2.6704 2.1472 31 1 1.9945 -4.2133 1.2601 32 1 3.4374 -3.1704 1.2509 33 1 3.4251 -3.1750 -1.2475 34 1 1.9830 -4.2181 -1.2383 35 1 1.9620 -2.6782 -2.1312 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261170265.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:31 Heat of formation + Delta-G solvation = 73.085821 kcal Electronic energy + Delta-G solvation = -17081.486327 eV Core-core repulsion = 14466.287176 eV Total energy + Delta-G solvation = -2615.199151 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.05195 -36.35777 -34.65740 -32.72739 -31.84920 -29.21645 -28.72458 -27.18410 -26.72649 -24.28111 -22.80706 -20.53900 -20.00184 -18.32322 -17.37830 -15.98485 -15.39308 -15.07169 -14.60100 -14.10697 -13.83322 -13.17584 -12.91489 -12.71722 -12.47880 -12.30130 -12.09278 -12.02861 -11.80357 -11.54764 -11.31034 -11.22150 -10.96424 -10.88876 -10.75364 -10.14665 -9.91603 -9.81977 -9.17538 -8.90340 -8.62122 -7.36459 -6.87656 -6.43160 -4.16536 1.96416 2.91072 3.07924 3.13732 3.22178 3.37647 3.65838 3.92888 4.59101 4.73454 5.07881 5.11652 5.34551 5.57653 5.57742 5.59593 5.62086 5.78447 5.83463 5.88547 5.99701 6.18172 6.22773 6.25701 6.33108 6.63495 6.81890 6.97299 7.12387 7.18723 7.53959 7.61029 7.90818 7.96282 8.12727 8.22049 8.50068 8.75698 8.93974 9.01053 10.15725 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.046081 B = 0.005494 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.484665 B = 5094.985103 C = 5444.810392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.011 4.011 3 C -0.104 4.104 4 C -0.266 4.266 5 C 0.097 3.903 6 C -0.449 4.449 7 H 0.081 0.919 8 C 0.072 3.928 9 N -0.801 5.801 10 Si 0.909 3.091 11 H -0.260 1.260 12 H -0.275 1.275 13 H -0.272 1.272 14 C -0.042 4.042 15 C -0.134 4.134 16 C 0.063 3.937 17 N -0.315 5.315 18 N -0.345 5.345 19 C 0.157 3.843 20 C -0.158 4.158 21 C -0.158 4.158 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.053 0.947 25 H 0.090 0.910 26 H 0.281 0.719 27 H 0.130 0.870 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.540 -8.953 -1.757 10.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.139 4.139 3 C -0.113 4.113 4 C -0.288 4.288 5 C 0.094 3.906 6 C -0.479 4.479 7 H 0.099 0.901 8 C -0.144 4.144 9 N -0.427 5.427 10 Si 0.733 3.267 11 H -0.184 1.184 12 H -0.200 1.200 13 H -0.197 1.197 14 C -0.064 4.064 15 C -0.155 4.155 16 C -0.093 4.093 17 N -0.141 5.141 18 N -0.128 5.128 19 C 0.054 3.946 20 C -0.216 4.216 21 C -0.216 4.216 22 H 0.081 0.919 23 H 0.095 0.905 24 H 0.072 0.928 25 H 0.108 0.892 26 H 0.092 0.908 27 H 0.148 0.852 28 H 0.123 0.877 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.722 -10.106 -1.610 10.889 hybrid contribution -0.408 1.525 -0.012 1.579 sum -4.129 -8.580 -1.622 9.660 Atomic orbital electron populations 1.20106 0.88623 1.02115 1.01665 1.20649 0.93059 0.87035 1.13161 1.19116 0.90768 0.93589 1.07827 1.19723 0.96797 0.88764 1.23522 1.18232 0.89788 0.92974 0.89602 1.19528 1.02769 0.91022 1.34537 0.90123 1.25942 0.94140 1.01668 0.92678 1.69863 1.12640 1.37765 1.22458 0.86246 0.79424 0.81712 0.79280 1.18364 1.20014 1.19699 1.22344 0.97970 0.93309 0.92825 1.20581 0.94161 0.91276 1.09460 1.21960 0.94807 0.90175 1.02389 1.77003 0.94173 1.12948 1.30024 1.47873 1.03781 1.04386 1.56746 1.21070 0.98432 0.78537 0.96512 1.22105 1.03028 0.99569 0.96869 1.22108 1.03080 0.99558 0.96842 0.91926 0.90529 0.92794 0.89228 0.90787 0.85210 0.87721 0.88925 0.92298 0.91505 0.91177 0.91183 0.91507 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 9.92 36.01 0.36 -0.69 16 2 C -0.01 -0.23 7.01 -81.35 -0.57 -0.80 16 3 C -0.10 -2.57 6.23 -105.24 -0.66 -3.22 16 4 C -0.27 -6.86 9.81 -38.29 -0.38 -7.23 16 5 C 0.10 2.60 5.67 -105.18 -0.60 2.01 16 6 C -0.45 -11.75 8.98 -37.96 -0.34 -12.09 16 7 H 0.08 2.05 7.90 -52.49 -0.41 1.63 16 8 C 0.07 1.78 5.12 -17.35 -0.09 1.69 16 9 N -0.80 -20.18 10.94 55.54 0.61 -19.58 16 10 Si 0.91 18.28 29.59 -169.99 -5.03 13.25 16 11 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 12 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 13 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 14 C -0.04 -1.08 8.69 -37.62 -0.33 -1.40 16 15 C -0.13 -3.25 10.26 -37.60 -0.39 -3.64 16 16 C 0.06 1.58 7.66 -81.13 -0.62 0.96 16 17 N -0.32 -7.23 12.31 34.26 0.42 -6.81 16 18 N -0.34 -6.80 3.23 -49.96 -0.16 -6.96 16 19 C 0.16 2.25 3.57 -67.93 -0.24 2.01 16 20 C -0.16 -2.03 9.42 37.16 0.35 -1.68 16 21 C -0.16 -2.00 9.43 37.16 0.35 -1.65 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 23 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.05 0.69 6.99 -51.93 -0.36 0.33 16 25 H 0.09 2.21 8.06 -52.48 -0.42 1.79 16 26 H 0.28 6.41 8.30 -40.82 -0.34 6.08 16 27 H 0.13 3.28 6.22 -52.49 -0.33 2.96 16 28 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 29 H 0.09 1.12 6.51 -51.93 -0.34 0.78 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 296.34 15.07 4.47 4.47 Total: -1.00 -29.55 296.34 -7.65 -37.20 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.80 Total: 4.18 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -3.15 Total: -25.75 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.87 Total: -33.35 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.55 -7.65 -37.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261170265.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.284 kcal (2) G-P(sol) polarization free energy of solvation -29.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds