Wall clock time and date at job start Mon Mar 30 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39033 * 126.13711 * 2 1 4 4 C 1.40140 * 134.27214 * 359.95724 * 3 2 1 5 5 C 1.39776 * 119.86672 * 180.35117 * 4 3 2 6 6 C 1.41002 * 119.51975 * 180.02562 * 5 4 3 7 7 H 1.07997 * 120.00145 * 334.50267 * 6 5 4 8 8 C 1.39770 * 120.00207 * 154.50722 * 6 5 4 9 9 N 1.30954 * 119.99753 * 342.33007 * 8 6 5 10 10 Si 1.86800 * 120.00154 * 162.32951 * 8 6 5 11 11 H 1.48500 * 109.47144 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47236 * 120.00090 * 10 8 6 13 13 H 1.48512 * 109.47044 * 240.00046 * 10 8 6 14 14 C 1.45976 * 120.96479 * 359.97438 * 5 4 3 15 15 C 1.35056 * 120.92997 * 359.97438 * 14 5 4 16 16 C 1.46015 * 119.61797 * 0.02562 * 15 14 5 17 17 N 1.31773 * 134.02263 * 179.97438 * 16 15 14 18 18 N 1.34002 * 126.14167 * 179.82011 * 2 1 3 19 19 C 1.46503 * 124.99288 * 359.97438 * 18 2 1 20 20 C 1.52999 * 109.47214 * 239.72440 * 19 18 2 21 21 C 1.52996 * 109.46848 * 119.72356 * 19 18 2 22 22 H 1.09001 * 109.47114 * 270.18435 * 1 2 3 23 23 H 1.09003 * 109.47328 * 30.18391 * 1 2 3 24 24 H 1.09003 * 109.47059 * 150.18224 * 1 2 3 25 25 H 1.08004 * 120.06597 * 0.36925 * 4 3 2 26 26 H 0.97004 * 119.99414 * 179.97438 * 9 8 6 27 27 H 1.08000 * 119.53473 * 180.02562 * 14 5 4 28 28 H 1.07995 * 120.19200 * 180.02562 * 15 14 5 29 29 H 1.08995 * 109.47007 * 359.72520 * 19 18 2 30 30 H 1.09005 * 109.47446 * 59.99701 * 20 19 18 31 31 H 1.09000 * 109.47262 * 179.97438 * 20 19 18 32 32 H 1.09006 * 109.46906 * 300.00300 * 20 19 18 33 33 H 1.09005 * 109.47172 * 60.00369 * 21 19 18 34 34 H 1.09000 * 109.46811 * 179.97438 * 21 19 18 35 35 H 1.08997 * 109.47376 * 299.99654 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3270 1.1228 0.0000 4 6 2.0935 2.5047 -0.0007 5 6 3.1726 3.3929 -0.0079 6 6 2.9293 4.7818 -0.0081 7 1 2.0023 5.1676 -0.4058 8 6 3.8878 5.6593 0.5064 9 7 4.8359 5.2078 1.2888 10 14 3.8165 7.4761 0.0780 11 1 2.6584 7.7287 -0.8166 12 1 3.6646 8.2725 1.3221 13 1 5.0704 7.8714 -0.6128 14 6 4.5480 2.9038 -0.0141 15 6 4.8138 1.5796 -0.0126 16 6 3.7114 0.6223 -0.0052 17 7 3.6412 -0.6936 -0.0024 18 7 2.2974 -1.0821 0.0034 19 6 1.8237 -2.4685 0.0083 20 6 2.3474 -3.1820 1.2563 21 6 2.3351 -3.1865 -1.2422 22 1 -0.3633 0.0033 1.0277 23 1 -0.3634 0.8883 -0.5167 24 1 -0.3633 -0.8916 -0.5110 25 1 1.0817 2.8825 0.0045 26 1 5.5014 5.8168 1.6456 27 1 5.3645 3.6107 -0.0192 28 1 5.8359 1.2309 -0.0168 29 1 0.7338 -2.4800 0.0136 30 1 1.9831 -2.6704 2.1472 31 1 1.9945 -4.2133 1.2601 32 1 3.4374 -3.1704 1.2509 33 1 3.4251 -3.1750 -1.2475 34 1 1.9830 -4.2181 -1.2383 35 1 1.9620 -2.6782 -2.1312 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261170265.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:31 Heat of formation + Delta-G solvation = 56.901852 kcal Electronic energy + Delta-G solvation = -17082.188116 eV Core-core repulsion = 14466.287176 eV Total energy + Delta-G solvation = -2615.900941 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.74279 -38.06844 -36.15431 -34.45729 -33.48887 -31.02225 -30.41661 -28.35344 -28.19798 -26.05139 -24.42363 -22.33662 -21.57653 -19.98934 -19.18504 -17.49459 -17.14719 -16.78304 -16.10398 -15.62747 -15.26498 -14.84325 -14.34753 -14.17423 -14.06668 -13.63344 -13.49241 -13.36149 -13.17863 -13.07043 -12.83457 -12.68712 -12.43522 -12.38944 -12.10184 -11.89545 -11.67221 -11.56886 -10.96001 -10.72998 -10.43528 -9.16542 -8.70866 -8.28841 -6.09869 0.19069 1.20403 1.42981 1.57459 1.60085 1.75220 1.83296 2.25385 2.72389 3.50210 3.67916 3.85859 3.98505 3.99557 4.10880 4.28866 4.40867 4.67008 4.70067 4.73888 4.77212 4.80814 4.85009 4.97975 5.05189 5.15239 5.19438 5.23111 5.30576 5.33507 5.68535 5.74217 6.02910 6.08854 6.29901 6.47231 6.57412 6.92227 7.02306 7.15384 8.36931 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.046081 B = 0.005494 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.484665 B = 5094.985103 C = 5444.810392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.019 3.981 3 C -0.157 4.157 4 C -0.266 4.266 5 C 0.061 3.939 6 C -0.487 4.487 7 H 0.076 0.924 8 C 0.035 3.965 9 N -0.834 5.834 10 Si 0.984 3.016 11 H -0.259 1.259 12 H -0.267 1.267 13 H -0.263 1.263 14 C -0.060 4.060 15 C -0.136 4.136 16 C 0.031 3.969 17 N -0.333 5.333 18 N -0.329 5.329 19 C 0.138 3.862 20 C -0.153 4.153 21 C -0.152 4.152 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.290 0.710 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.130 0.870 30 H 0.049 0.951 31 H 0.110 0.890 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.109 0.891 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.497 -10.882 -1.944 12.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.113 4.113 3 C -0.166 4.166 4 C -0.289 4.289 5 C 0.058 3.942 6 C -0.517 4.517 7 H 0.094 0.906 8 C -0.179 4.179 9 N -0.461 5.461 10 Si 0.805 3.195 11 H -0.183 1.183 12 H -0.192 1.192 13 H -0.187 1.187 14 C -0.082 4.082 15 C -0.157 4.157 16 C -0.123 4.123 17 N -0.161 5.161 18 N -0.111 5.111 19 C 0.038 3.962 20 C -0.210 4.210 21 C -0.210 4.210 22 H 0.101 0.899 23 H 0.095 0.905 24 H 0.113 0.887 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.141 0.859 28 H 0.139 0.861 29 H 0.147 0.853 30 H 0.068 0.932 31 H 0.128 0.872 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.128 0.872 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.660 -12.078 -1.796 13.458 hybrid contribution 0.032 1.754 0.058 1.755 sum -5.627 -10.324 -1.738 11.886 Atomic orbital electron populations 1.20342 0.84506 1.04235 1.03591 1.21483 0.95424 0.86138 1.08293 1.19453 0.91805 0.94236 1.11105 1.19888 0.96606 0.89714 1.22676 1.18560 0.90597 0.93810 0.91194 1.19677 1.03758 0.91525 1.36717 0.90606 1.26743 0.93283 1.06040 0.91788 1.69905 1.13408 1.39627 1.23140 0.85134 0.79555 0.75753 0.79100 1.18272 1.19187 1.18743 1.22259 0.97558 0.93706 0.94657 1.20789 0.95201 0.91137 1.08586 1.22122 0.95177 0.91052 1.03928 1.76957 0.96210 1.11819 1.31155 1.48541 1.02769 1.06520 1.53221 1.21797 1.00604 0.75685 0.98111 1.22088 1.01580 1.01829 0.95538 1.22088 1.01652 1.01784 0.95483 0.89854 0.90484 0.88688 0.89157 0.89983 0.85855 0.86119 0.85282 0.93187 0.87156 0.93432 0.93418 0.87198 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.88 9.92 71.24 0.71 -1.17 16 2 C 0.02 0.74 7.01 42.42 0.30 1.04 16 3 C -0.16 -7.84 6.23 -20.27 -0.13 -7.97 16 4 C -0.27 -14.28 9.81 23.10 0.23 -14.06 16 5 C 0.06 3.47 5.67 -20.22 -0.11 3.35 16 6 C -0.49 -26.75 8.98 23.32 0.21 -26.54 16 7 H 0.08 4.05 7.90 -2.91 -0.02 4.02 16 8 C 0.04 1.78 5.12 85.19 0.44 2.21 16 9 N -0.83 -43.60 10.94 21.80 0.24 -43.37 16 10 Si 0.98 38.24 29.59 68.60 2.03 40.27 16 11 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 12 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 13 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 14 C -0.06 -3.23 8.69 23.54 0.20 -3.03 16 15 C -0.14 -6.95 10.26 23.55 0.24 -6.71 16 16 C 0.03 1.60 7.66 43.53 0.33 1.93 16 17 N -0.33 -15.27 12.31 -45.52 -0.56 -15.83 16 18 N -0.33 -12.27 3.23 -311.99 -1.01 -13.28 16 19 C 0.14 3.38 3.57 44.99 0.16 3.55 16 20 C -0.15 -3.38 9.42 71.98 0.68 -2.70 16 21 C -0.15 -3.29 9.43 71.98 0.68 -2.61 16 22 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.09 1.86 6.99 -2.39 -0.02 1.84 16 25 H 0.09 4.62 8.06 -2.91 -0.02 4.59 16 26 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 27 H 0.12 6.66 6.22 -2.91 -0.02 6.65 16 28 H 0.12 5.52 8.06 -2.91 -0.02 5.49 16 29 H 0.13 2.30 6.51 -2.39 -0.02 2.29 16 30 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -68.42 296.34 5.71 -62.71 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 1.08 Total: 22.18 kcal Atomic # 6 Polarization: -56.63 SS G_CDS: 3.93 Total: -52.70 kcal Atomic # 7 Polarization: -71.14 SS G_CDS: -1.33 Total: -72.47 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -68.42 5.71 -62.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261170265.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.616 kcal (2) G-P(sol) polarization free energy of solvation -68.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds