Wall clock time and date at job start Mon Mar 30 2020 06:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30576 * 125.65495 * 2 1 4 4 N 1.40054 * 109.58914 * 180.02562 * 3 2 1 5 5 C 1.46495 * 126.01132 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46689 * 60.02888 * 5 4 3 7 7 C 1.53005 * 109.47362 * 300.03031 * 5 4 3 8 8 C 1.37179 * 107.98368 * 0.26785 * 4 3 2 9 9 C 1.39323 * 133.71745 * 180.55340 * 8 4 3 10 10 C 1.38147 * 120.98143 * 179.57391 * 9 8 4 11 11 C 1.37851 * 121.55246 * 359.66233 * 10 9 8 12 12 C 1.40669 * 120.14449 * 0.02562 * 11 10 9 13 13 C 1.40566 * 120.69813 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00184 * 209.34338 * 13 12 11 15 15 C 1.40103 * 119.99860 * 29.34299 * 13 12 11 16 16 N 1.30767 * 120.00192 * 15.21134 * 15 13 12 17 17 Si 1.86795 * 119.99869 * 195.21140 * 15 13 12 18 18 H 1.48506 * 109.47417 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47263 * 119.99936 * 17 15 13 20 20 H 1.48497 * 109.47357 * 240.00097 * 17 15 13 21 21 C 1.40548 * 125.65110 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.47192 * 95.60776 * 1 2 3 23 23 H 1.09001 * 109.46947 * 215.60830 * 1 2 3 24 24 H 1.09002 * 109.47233 * 335.60376 * 1 2 3 25 25 H 1.08996 * 109.47548 * 180.02562 * 5 4 3 26 26 H 1.09000 * 109.47036 * 180.02562 * 6 5 4 27 27 H 1.08994 * 109.47638 * 59.99998 * 6 5 4 28 28 H 1.09005 * 109.47018 * 299.99290 * 6 5 4 29 29 H 1.08999 * 109.46849 * 179.97438 * 7 5 4 30 30 H 1.09001 * 109.46513 * 299.99476 * 7 5 4 31 31 H 1.08996 * 109.47117 * 59.99334 * 7 5 4 32 32 H 1.07998 * 119.50842 * 359.25853 * 9 8 4 33 33 H 1.08005 * 119.22528 * 179.69073 * 10 9 8 34 34 H 1.07999 * 119.92806 * 180.02562 * 11 10 9 35 35 H 0.96998 * 119.99891 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2681 1.0610 0.0000 4 7 3.6140 0.6734 -0.0006 5 6 4.7696 1.5738 -0.0013 6 6 4.7295 2.4558 1.2482 7 6 4.7276 2.4565 -1.2503 8 6 3.6599 -0.6976 -0.0071 9 6 4.6984 -1.6263 -0.0008 10 6 4.4391 -2.9832 -0.0016 11 6 3.1499 -3.4712 -0.0017 12 6 2.0586 -2.5836 -0.0015 13 6 0.7392 -3.0684 -0.0011 14 1 -0.0491 -2.4895 -0.4593 15 6 0.4467 -4.3027 0.5937 16 7 1.3127 -4.8627 1.3978 17 14 -1.1804 -5.1486 0.2382 18 1 -1.9779 -4.3148 -0.6967 19 1 -0.9243 -6.4753 -0.3780 20 1 -1.9322 -5.3285 1.5061 21 6 2.3262 -1.1421 -0.0005 22 1 -0.3633 -0.1004 -1.0227 23 1 -0.3633 -0.8355 0.5984 24 1 -0.3634 0.9359 0.4245 25 1 5.6878 0.9865 -0.0021 26 1 5.5891 3.1261 1.2475 27 1 4.7594 1.8271 2.1380 28 1 3.8113 3.0433 1.2490 29 1 5.5872 3.1267 -1.2505 30 1 4.7562 1.8280 -2.1404 31 1 3.8094 3.0438 -1.2495 32 1 5.7215 -1.2802 -0.0004 33 1 5.2659 -3.6781 -0.0017 34 1 2.9773 -4.5373 -0.0019 35 1 1.1100 -5.7170 1.8099 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261183656.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:33 Heat of formation + Delta-G solvation = 64.217609 kcal Electronic energy + Delta-G solvation = -17443.787088 eV Core-core repulsion = 14828.203383 eV Total energy + Delta-G solvation = -2615.583706 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.98983 -36.07179 -34.85053 -33.64448 -31.21833 -29.07980 -28.18114 -26.98888 -26.68484 -25.04882 -21.43863 -21.19711 -20.33660 -18.40490 -16.98092 -15.78899 -15.46963 -15.02396 -14.28218 -13.99948 -13.60307 -13.41246 -12.89543 -12.86073 -12.24820 -12.05680 -11.91090 -11.80312 -11.61023 -11.51814 -11.23961 -11.10022 -10.90171 -10.82442 -10.54979 -10.11324 -9.94511 -9.54094 -9.34268 -9.27701 -8.37834 -7.22767 -6.91571 -6.66331 -4.43530 2.33395 2.90509 3.00440 3.05495 3.27014 3.41663 3.78283 3.80995 4.53459 4.98450 5.30785 5.37520 5.59774 5.64361 5.74437 5.85972 5.98079 6.00906 6.05325 6.12447 6.37358 6.38419 6.44114 6.54890 6.62348 6.69021 6.89485 6.93310 7.01681 7.22814 7.50334 7.77594 7.90543 7.97236 8.13908 8.37625 8.55810 8.69975 8.80796 9.02017 9.99366 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.032598 B = 0.007199 C = 0.006247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.746237 B = 3888.458529 C = 4481.410708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.113 3.887 3 N -0.322 5.322 4 N -0.418 5.418 5 C 0.175 3.825 6 C -0.157 4.157 7 C -0.157 4.157 8 C 0.166 3.834 9 C -0.296 4.296 10 C -0.034 4.034 11 C -0.231 4.231 12 C 0.181 3.819 13 C -0.436 4.436 14 H 0.090 0.910 15 C 0.075 3.925 16 N -0.770 5.770 17 Si 0.910 3.090 18 H -0.256 1.256 19 H -0.270 1.270 20 H -0.272 1.272 21 C -0.255 4.255 22 H 0.067 0.933 23 H 0.086 0.914 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.619 5.274 -1.539 5.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.058 4.058 3 N -0.139 5.139 4 N -0.207 5.207 5 C 0.071 3.929 6 C -0.215 4.215 7 C -0.215 4.215 8 C 0.052 3.948 9 C -0.320 4.320 10 C -0.055 4.055 11 C -0.252 4.252 12 C 0.175 3.825 13 C -0.465 4.465 14 H 0.108 0.892 15 C -0.147 4.147 16 N -0.394 5.394 17 Si 0.734 3.266 18 H -0.180 1.180 19 H -0.195 1.195 20 H -0.197 1.197 21 C -0.263 4.263 22 H 0.085 0.915 23 H 0.105 0.895 24 H 0.075 0.925 25 H 0.106 0.894 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.132 0.868 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.807 6.488 -1.370 6.873 hybrid contribution -0.365 -1.339 0.005 1.388 sum 1.442 5.149 -1.366 5.519 Atomic orbital electron populations 1.20227 0.87924 1.02379 1.02272 1.21822 0.95813 0.90186 0.97932 1.76519 0.86792 1.23206 1.27396 1.48080 1.03240 1.02450 1.66910 1.20792 0.86015 0.90536 0.95510 1.22110 1.02253 0.99673 0.97465 1.22117 1.02271 0.99678 0.97443 1.18669 0.95898 0.83049 0.97216 1.19017 0.94278 0.91835 1.26896 1.20337 0.96284 0.93232 0.95644 1.20861 0.90833 0.99032 1.14486 1.18055 0.93334 0.87175 0.83924 1.19708 0.94808 1.01800 1.30162 0.89246 1.26066 0.99128 0.96616 0.92854 1.69830 1.35296 1.15510 1.18721 0.86210 0.81218 0.79685 0.79478 1.17974 1.19492 1.19724 1.19720 0.90862 0.94095 1.21662 0.91452 0.89492 0.92514 0.89377 0.91917 0.92453 0.91617 0.91914 0.92514 0.91618 0.89812 0.89154 0.86782 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.33 9.30 36.00 0.33 -0.99 16 2 C 0.11 2.65 7.21 -82.26 -0.59 2.06 16 3 N -0.32 -7.35 12.32 33.77 0.42 -6.93 16 4 N -0.42 -9.20 3.34 -52.26 -0.17 -9.37 16 5 C 0.17 2.98 3.71 -67.93 -0.25 2.73 16 6 C -0.16 -2.35 9.45 37.16 0.35 -1.99 16 7 C -0.16 -2.31 9.45 37.16 0.35 -1.96 16 8 C 0.17 4.08 6.88 -84.19 -0.58 3.50 16 9 C -0.30 -6.97 9.82 -39.21 -0.38 -7.35 16 10 C -0.03 -0.81 9.94 -39.76 -0.40 -1.20 16 11 C -0.23 -5.95 8.67 -38.81 -0.34 -6.29 16 12 C 0.18 4.75 5.68 -104.72 -0.59 4.16 16 13 C -0.44 -10.87 8.05 -38.00 -0.31 -11.17 16 14 H 0.09 2.10 6.16 -52.49 -0.32 1.77 16 15 C 0.07 1.76 5.16 -17.31 -0.09 1.67 16 16 N -0.77 -18.91 11.15 55.56 0.62 -18.29 16 17 Si 0.91 17.39 29.59 -169.99 -5.03 12.36 16 18 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 19 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 21 C -0.25 -6.55 6.19 -104.77 -0.65 -7.20 16 22 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 23 H 0.09 1.69 6.55 -51.93 -0.34 1.35 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.09 1.43 7.46 -51.93 -0.39 1.04 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 1.76 7.63 -52.49 -0.40 1.36 16 33 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 34 H 0.11 2.97 6.45 -52.49 -0.34 2.63 16 35 H 0.28 6.27 8.29 -40.82 -0.34 5.94 16 LS Contribution 292.98 15.07 4.42 4.42 Total: -1.00 -28.48 292.98 -7.62 -36.10 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -4.73 Total: 5.78 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -3.14 Total: -24.05 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.86 Total: -34.60 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.48 -7.62 -36.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261183656.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.319 kcal (2) G-P(sol) polarization free energy of solvation -28.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds