Wall clock time and date at job start Mon Mar 30 2020 06:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30576 * 125.65495 * 2 1 4 4 N 1.40054 * 109.58914 * 180.02562 * 3 2 1 5 5 C 1.46495 * 126.01132 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46689 * 60.02888 * 5 4 3 7 7 C 1.53005 * 109.47362 * 300.03031 * 5 4 3 8 8 C 1.37179 * 107.98368 * 0.26785 * 4 3 2 9 9 C 1.39323 * 133.71745 * 180.55340 * 8 4 3 10 10 C 1.38147 * 120.98143 * 179.57391 * 9 8 4 11 11 C 1.37851 * 121.55246 * 359.66233 * 10 9 8 12 12 C 1.40669 * 120.14449 * 0.02562 * 11 10 9 13 13 C 1.40566 * 120.69813 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00184 * 209.34338 * 13 12 11 15 15 C 1.40103 * 119.99860 * 29.34299 * 13 12 11 16 16 N 1.30767 * 120.00192 * 15.21134 * 15 13 12 17 17 Si 1.86795 * 119.99869 * 195.21140 * 15 13 12 18 18 H 1.48506 * 109.47417 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47263 * 119.99936 * 17 15 13 20 20 H 1.48497 * 109.47357 * 240.00097 * 17 15 13 21 21 C 1.40548 * 125.65110 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.47192 * 95.60776 * 1 2 3 23 23 H 1.09001 * 109.46947 * 215.60830 * 1 2 3 24 24 H 1.09002 * 109.47233 * 335.60376 * 1 2 3 25 25 H 1.08996 * 109.47548 * 180.02562 * 5 4 3 26 26 H 1.09000 * 109.47036 * 180.02562 * 6 5 4 27 27 H 1.08994 * 109.47638 * 59.99998 * 6 5 4 28 28 H 1.09005 * 109.47018 * 299.99290 * 6 5 4 29 29 H 1.08999 * 109.46849 * 179.97438 * 7 5 4 30 30 H 1.09001 * 109.46513 * 299.99476 * 7 5 4 31 31 H 1.08996 * 109.47117 * 59.99334 * 7 5 4 32 32 H 1.07998 * 119.50842 * 359.25853 * 9 8 4 33 33 H 1.08005 * 119.22528 * 179.69073 * 10 9 8 34 34 H 1.07999 * 119.92806 * 180.02562 * 11 10 9 35 35 H 0.96998 * 119.99891 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2681 1.0610 0.0000 4 7 3.6140 0.6734 -0.0006 5 6 4.7696 1.5738 -0.0013 6 6 4.7295 2.4558 1.2482 7 6 4.7276 2.4565 -1.2503 8 6 3.6599 -0.6976 -0.0071 9 6 4.6984 -1.6263 -0.0008 10 6 4.4391 -2.9832 -0.0016 11 6 3.1499 -3.4712 -0.0017 12 6 2.0586 -2.5836 -0.0015 13 6 0.7392 -3.0684 -0.0011 14 1 -0.0491 -2.4895 -0.4593 15 6 0.4467 -4.3027 0.5937 16 7 1.3127 -4.8627 1.3978 17 14 -1.1804 -5.1486 0.2382 18 1 -1.9779 -4.3148 -0.6967 19 1 -0.9243 -6.4753 -0.3780 20 1 -1.9322 -5.3285 1.5061 21 6 2.3262 -1.1421 -0.0005 22 1 -0.3633 -0.1004 -1.0227 23 1 -0.3633 -0.8355 0.5984 24 1 -0.3634 0.9359 0.4245 25 1 5.6878 0.9865 -0.0021 26 1 5.5891 3.1261 1.2475 27 1 4.7594 1.8271 2.1380 28 1 3.8113 3.0433 1.2490 29 1 5.5872 3.1267 -1.2505 30 1 4.7562 1.8280 -2.1404 31 1 3.8094 3.0438 -1.2495 32 1 5.7215 -1.2802 -0.0004 33 1 5.2659 -3.6781 -0.0017 34 1 2.9773 -4.5373 -0.0019 35 1 1.1100 -5.7170 1.8099 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261183656.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:32 Heat of formation + Delta-G solvation = 49.487630 kcal Electronic energy + Delta-G solvation = -17444.425828 eV Core-core repulsion = 14828.203383 eV Total energy + Delta-G solvation = -2616.222445 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.74441 -37.80231 -36.36898 -35.44677 -32.85946 -30.88252 -29.97665 -28.31734 -28.17357 -26.87361 -23.14885 -22.90004 -22.03748 -20.15348 -18.67919 -17.49478 -17.25507 -16.65161 -15.91291 -15.49942 -15.30268 -15.02947 -14.51374 -14.28113 -13.90819 -13.49622 -13.36705 -13.19654 -13.09705 -13.04015 -12.81235 -12.75515 -12.36051 -12.23351 -12.04871 -11.89714 -11.69200 -11.33077 -11.11157 -11.05643 -10.14941 -9.09112 -8.70526 -8.47544 -6.32110 0.51742 1.21956 1.43569 1.55990 1.59384 1.83547 1.97359 2.20823 2.72846 3.61397 3.69139 4.05783 4.06493 4.18717 4.26534 4.38050 4.67196 4.68084 4.71926 4.76957 4.81261 4.87999 4.91384 5.04841 5.08882 5.16258 5.21109 5.23578 5.29013 5.42306 5.66329 5.93267 6.10064 6.13924 6.25763 6.57486 6.75262 6.83417 6.94609 7.20526 8.24897 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.032598 B = 0.007199 C = 0.006247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.746237 B = 3888.458529 C = 4481.410708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.096 3.904 3 N -0.323 5.323 4 N -0.415 5.415 5 C 0.156 3.844 6 C -0.148 4.148 7 C -0.147 4.147 8 C 0.145 3.855 9 C -0.301 4.301 10 C -0.038 4.038 11 C -0.260 4.260 12 C 0.153 3.847 13 C -0.457 4.457 14 H 0.097 0.903 15 C 0.036 3.964 16 N -0.803 5.803 17 Si 0.985 3.015 18 H -0.249 1.249 19 H -0.265 1.265 20 H -0.265 1.265 21 C -0.288 4.288 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.098 0.902 26 H 0.104 0.896 27 H 0.040 0.960 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 6.230 -1.776 6.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 N -0.141 5.141 4 N -0.204 5.204 5 C 0.055 3.945 6 C -0.206 4.206 7 C -0.205 4.205 8 C 0.029 3.971 9 C -0.326 4.326 10 C -0.058 4.058 11 C -0.281 4.281 12 C 0.148 3.852 13 C -0.485 4.485 14 H 0.115 0.885 15 C -0.182 4.182 16 N -0.427 5.427 17 Si 0.805 3.195 18 H -0.172 1.172 19 H -0.190 1.190 20 H -0.189 1.189 21 C -0.297 4.297 22 H 0.100 0.900 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.116 0.884 26 H 0.122 0.878 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.122 0.878 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.120 0.880 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.769 7.479 -1.606 7.852 hybrid contribution -0.237 -1.554 0.103 1.575 sum 1.532 5.925 -1.504 6.302 Atomic orbital electron populations 1.20265 0.85503 1.03220 1.03236 1.22363 0.97616 0.89478 0.98027 1.76450 0.87436 1.23168 1.27022 1.48546 1.03997 1.02204 1.65603 1.21340 0.84657 0.90743 0.97728 1.22051 1.03590 0.99406 0.95512 1.22050 1.03580 0.99396 0.95469 1.19005 0.96027 0.84566 0.97477 1.19295 0.95291 0.91629 1.26336 1.20627 0.96402 0.94083 0.94722 1.20872 0.91915 0.98461 1.16838 1.18429 0.94296 0.87889 0.84633 1.19993 0.94667 1.03070 1.30809 0.88534 1.26959 1.02788 0.96574 0.91910 1.69879 1.37380 1.16155 1.19256 0.85097 0.76464 0.78405 0.79526 1.17238 1.18962 1.18929 1.20137 0.92257 0.94611 1.22658 0.89997 0.90233 0.90298 0.88405 0.87771 0.94046 0.92688 0.87823 0.93810 0.92689 0.87379 0.86547 0.88049 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.41 9.30 71.24 0.66 -1.75 16 2 C 0.10 4.52 7.21 43.31 0.31 4.83 16 3 N -0.32 -14.65 12.32 -47.09 -0.58 -15.24 16 4 N -0.41 -18.04 3.34 -319.25 -1.07 -19.10 16 5 C 0.16 5.05 3.71 45.00 0.17 5.21 16 6 C -0.15 -4.08 9.45 71.98 0.68 -3.40 16 7 C -0.15 -3.98 9.45 71.98 0.68 -3.30 16 8 C 0.14 7.18 6.88 39.14 0.27 7.45 16 9 C -0.30 -14.15 9.82 22.51 0.22 -13.92 16 10 C -0.04 -1.81 9.94 22.16 0.22 -1.59 16 11 C -0.26 -13.82 8.67 22.77 0.20 -13.62 16 12 C 0.15 8.30 5.68 -19.93 -0.11 8.19 16 13 C -0.46 -23.26 8.05 23.29 0.19 -23.07 16 14 H 0.10 4.59 6.16 -2.91 -0.02 4.57 16 15 C 0.04 1.71 5.16 85.30 0.44 2.16 16 16 N -0.80 -40.15 11.15 21.86 0.24 -39.91 16 17 Si 0.99 35.31 29.59 68.60 2.03 37.34 16 18 H -0.25 -8.57 7.11 99.48 0.71 -7.87 16 19 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 20 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 21 C -0.29 -15.11 6.19 -19.96 -0.12 -15.24 16 22 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 23 H 0.08 3.10 6.55 -2.39 -0.02 3.09 16 24 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.10 2.95 7.46 -2.39 -0.02 2.94 16 26 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.11 4.40 7.63 -2.91 -0.02 4.38 16 33 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 34 H 0.10 5.51 6.45 -2.91 -0.02 5.49 16 35 H 0.29 13.08 8.29 -92.71 -0.77 12.31 16 Total: -1.00 -62.74 292.98 5.51 -57.23 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 1.08 Total: 27.72 kcal Atomic # 6 Polarization: -51.85 SS G_CDS: 3.80 Total: -48.05 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -1.40 Total: -74.25 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.34 kcal Total: -62.74 5.51 -57.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261183656.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.720 kcal (2) G-P(sol) polarization free energy of solvation -62.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds