Wall clock time and date at job start Mon Mar 30 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30210 * 126.16051 * 2 1 4 4 N 1.39816 * 110.15757 * 179.97438 * 3 2 1 5 5 C 1.46503 * 125.38529 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47121 * 300.01410 * 5 4 3 7 7 C 1.53002 * 109.47217 * 60.01861 * 5 4 3 8 8 C 1.36766 * 109.22699 * 0.02562 * 4 3 2 9 9 C 1.39870 * 133.41017 * 179.97438 * 8 4 3 10 10 C 1.35850 * 120.34482 * 179.97438 * 9 8 4 11 11 C 1.41225 * 120.58846 * 0.02562 * 10 9 8 12 12 C 1.41339 * 120.03878 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00077 * 154.94511 * 12 11 10 14 14 C 1.39871 * 119.99907 * 334.94857 * 12 11 10 15 15 N 1.30881 * 119.99855 * 342.07948 * 14 12 11 16 16 Si 1.86791 * 119.99905 * 162.07471 * 14 12 11 17 17 H 1.48504 * 109.47142 * 94.64394 * 16 14 12 18 18 H 1.48502 * 109.47229 * 214.64358 * 16 14 12 19 19 H 1.48500 * 109.47569 * 334.64840 * 16 14 12 20 20 C 1.40238 * 119.93132 * 359.97438 * 11 10 9 21 21 C 1.39370 * 119.30066 * 0.02562 * 20 11 10 22 22 H 1.08997 * 109.47080 * 269.99401 * 1 2 3 23 23 H 1.08999 * 109.47530 * 30.00028 * 1 2 3 24 24 H 1.09010 * 109.46881 * 149.99664 * 1 2 3 25 25 H 1.09007 * 109.46872 * 180.02562 * 5 4 3 26 26 H 1.08997 * 109.46852 * 60.00359 * 6 5 4 27 27 H 1.09005 * 109.47318 * 180.02562 * 6 5 4 28 28 H 1.08999 * 109.47555 * 299.99757 * 6 5 4 29 29 H 1.09000 * 109.46699 * 299.99608 * 7 5 4 30 30 H 1.09004 * 109.46862 * 59.99835 * 7 5 4 31 31 H 1.08995 * 109.47046 * 180.02562 * 7 5 4 32 32 H 1.07994 * 119.82672 * 359.97438 * 9 8 4 33 33 H 1.08004 * 119.70598 * 179.97438 * 10 9 8 34 34 H 0.97002 * 119.99933 * 179.97438 * 15 14 12 35 35 H 1.07994 * 120.34908 * 179.72122 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0513 0.0000 4 7 3.6192 0.6658 0.0006 5 6 4.7640 1.5801 0.0013 6 6 4.7128 2.4623 -1.2476 7 6 4.7121 2.4614 1.2509 8 6 3.6962 -0.6997 0.0004 9 6 4.7647 -1.6022 0.0003 10 6 4.5325 -2.9407 0.0006 11 6 3.2118 -3.4410 0.0005 12 6 2.9836 -4.8359 0.0003 13 1 2.0602 -5.2321 0.3963 14 6 3.9537 -5.7031 -0.5127 15 7 4.8947 -5.2421 -1.2968 16 14 3.9062 -7.5193 -0.0785 17 1 3.1792 -8.2628 -1.1387 18 1 5.2932 -8.0391 0.0284 19 1 3.2085 -7.6999 1.2198 20 6 2.1269 -2.5524 0.0006 21 6 2.3695 -1.1799 0.0003 22 1 -0.3633 -0.0001 1.0276 23 1 -0.3634 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 5.6892 1.0037 0.0012 26 1 3.7877 3.0386 -1.2477 27 1 5.5648 3.1423 -1.2474 28 1 4.7499 1.8345 -2.1379 29 1 3.7869 3.0377 1.2508 30 1 4.7486 1.8327 2.1406 31 1 5.5635 3.1419 1.2512 32 1 5.7796 -1.2331 0.0000 33 1 5.3653 -3.6284 0.0001 34 1 5.5677 -5.8435 -1.6523 35 1 1.1143 -2.9275 -0.0040 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261201722.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:40 Heat of formation + Delta-G solvation = 63.861888 kcal Electronic energy + Delta-G solvation = -17177.419917 eV Core-core repulsion = 14561.820786 eV Total energy + Delta-G solvation = -2615.599131 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.06279 -36.37426 -35.07531 -33.16757 -31.34442 -29.27179 -28.57732 -27.06161 -27.02306 -24.76298 -21.50014 -21.30783 -20.46152 -18.24643 -17.26301 -16.24330 -15.20807 -14.97467 -14.43886 -14.09385 -13.57151 -13.45041 -13.05797 -12.67962 -12.50859 -12.18896 -12.02313 -11.96001 -11.76979 -11.65689 -11.18764 -11.14325 -10.99027 -10.82924 -10.72478 -10.20527 -10.12835 -9.63714 -9.38466 -9.12439 -8.60322 -7.33973 -6.87783 -6.63982 -4.22836 2.25810 2.80514 3.09242 3.13487 3.22192 3.26713 3.58711 3.96456 4.59180 4.89348 5.23588 5.27383 5.47257 5.52335 5.64248 5.68346 5.76942 5.92350 5.93134 5.96962 6.06979 6.20939 6.26145 6.35227 6.36508 6.61448 6.84589 6.88193 7.07219 7.22751 7.42867 7.63729 7.73831 7.97883 8.10553 8.24255 8.54513 8.70329 8.91151 8.94858 10.23014 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.031294 B = 0.006311 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.514007 B = 4435.337250 C = 5071.372960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.059 3.941 3 N -0.274 5.274 4 N -0.408 5.408 5 C 0.173 3.827 6 C -0.158 4.158 7 C -0.158 4.158 8 C 0.039 3.961 9 C -0.141 4.141 10 C -0.082 4.082 11 C 0.087 3.913 12 C -0.463 4.463 13 H 0.078 0.922 14 C 0.075 3.925 15 N -0.807 5.807 16 Si 0.906 3.094 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.261 1.261 20 C -0.189 4.189 21 C -0.127 4.127 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.128 0.872 34 H 0.279 0.721 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.040 7.733 1.800 7.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.118 4.118 3 N -0.090 5.090 4 N -0.201 5.201 5 C 0.069 3.931 6 C -0.216 4.216 7 C -0.216 4.216 8 C -0.072 4.072 9 C -0.162 4.162 10 C -0.103 4.103 11 C 0.084 3.916 12 C -0.494 4.494 13 H 0.096 0.904 14 C -0.141 4.141 15 N -0.434 5.434 16 Si 0.731 3.269 17 H -0.197 1.197 18 H -0.202 1.202 19 H -0.185 1.185 20 C -0.212 4.212 21 C -0.134 4.134 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.093 0.907 25 H 0.108 0.892 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.145 0.855 34 H 0.090 0.910 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.427 8.998 1.655 9.159 hybrid contribution 0.278 -1.695 0.025 1.717 sum 0.705 7.303 1.680 7.527 Atomic orbital electron populations 1.20009 0.87326 1.02471 1.02095 1.23267 0.95641 0.90040 1.02818 1.76025 0.87917 1.24209 1.20885 1.47668 1.02351 1.02543 1.67513 1.20840 0.86332 0.90327 0.95560 1.22132 1.02333 0.99688 0.97492 1.22130 1.02359 0.99673 0.97431 1.18522 0.95804 0.83157 1.09676 1.19480 0.94527 0.92755 1.09479 1.21120 0.98393 0.92667 0.98158 1.17430 0.90418 0.93209 0.90566 1.19422 1.02974 0.90721 1.36264 0.90421 1.25847 0.94302 1.01301 0.92615 1.69820 1.12868 1.37733 1.22944 0.86334 0.78375 0.82119 0.80082 1.19683 1.20182 1.18499 1.20335 0.97704 0.89338 1.13811 1.19471 0.90768 0.93724 1.09398 0.91302 0.91766 0.90713 0.89195 0.91673 0.91779 0.92374 0.91674 0.92423 0.91777 0.88951 0.85469 0.91006 0.88407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.96 10.48 36.00 0.38 -0.58 16 2 C 0.06 1.23 7.44 -80.11 -0.60 0.63 16 3 N -0.27 -5.74 12.21 34.88 0.43 -5.31 16 4 N -0.41 -8.43 3.31 -52.07 -0.17 -8.61 16 5 C 0.17 2.78 3.67 -67.93 -0.25 2.53 16 6 C -0.16 -2.23 9.44 37.16 0.35 -1.88 16 7 C -0.16 -2.18 9.44 37.16 0.35 -1.83 16 8 C 0.04 0.90 6.87 -83.97 -0.58 0.33 16 9 C -0.14 -3.28 9.74 -39.83 -0.39 -3.67 16 10 C -0.08 -2.08 8.60 -39.30 -0.34 -2.42 16 11 C 0.09 2.29 5.57 -106.83 -0.59 1.69 16 12 C -0.46 -12.11 9.03 -37.79 -0.34 -12.45 16 13 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 14 C 0.08 1.86 5.12 -17.35 -0.09 1.77 16 15 N -0.81 -20.53 10.98 55.54 0.61 -19.92 16 16 Si 0.91 18.47 29.59 -169.99 -5.03 13.44 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 20 C -0.19 -4.71 9.86 -38.41 -0.38 -5.09 16 21 C -0.13 -3.03 6.32 -105.22 -0.66 -3.69 16 22 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 25 H 0.09 1.39 7.34 -51.93 -0.38 1.01 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.90 7.56 -52.49 -0.40 1.50 16 33 H 0.13 3.26 6.16 -52.48 -0.32 2.94 16 34 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 35 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 297.58 15.07 4.48 4.48 Total: -1.00 -28.75 297.58 -7.70 -36.45 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.88 Total: 4.13 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: -3.14 Total: -24.66 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.86 Total: -33.85 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.75 -7.70 -36.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261201722.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.315 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds