Wall clock time and date at job start Mon Mar 30 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30210 * 126.16051 * 2 1 4 4 N 1.39816 * 110.15757 * 179.97438 * 3 2 1 5 5 C 1.46503 * 125.38529 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47121 * 300.01410 * 5 4 3 7 7 C 1.53002 * 109.47217 * 60.01861 * 5 4 3 8 8 C 1.36766 * 109.22699 * 0.02562 * 4 3 2 9 9 C 1.39870 * 133.41017 * 179.97438 * 8 4 3 10 10 C 1.35850 * 120.34482 * 179.97438 * 9 8 4 11 11 C 1.41225 * 120.58846 * 0.02562 * 10 9 8 12 12 C 1.41339 * 120.03878 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00077 * 154.94511 * 12 11 10 14 14 C 1.39871 * 119.99907 * 334.94857 * 12 11 10 15 15 N 1.30881 * 119.99855 * 342.07948 * 14 12 11 16 16 Si 1.86791 * 119.99905 * 162.07471 * 14 12 11 17 17 H 1.48504 * 109.47142 * 94.64394 * 16 14 12 18 18 H 1.48502 * 109.47229 * 214.64358 * 16 14 12 19 19 H 1.48500 * 109.47569 * 334.64840 * 16 14 12 20 20 C 1.40238 * 119.93132 * 359.97438 * 11 10 9 21 21 C 1.39370 * 119.30066 * 0.02562 * 20 11 10 22 22 H 1.08997 * 109.47080 * 269.99401 * 1 2 3 23 23 H 1.08999 * 109.47530 * 30.00028 * 1 2 3 24 24 H 1.09010 * 109.46881 * 149.99664 * 1 2 3 25 25 H 1.09007 * 109.46872 * 180.02562 * 5 4 3 26 26 H 1.08997 * 109.46852 * 60.00359 * 6 5 4 27 27 H 1.09005 * 109.47318 * 180.02562 * 6 5 4 28 28 H 1.08999 * 109.47555 * 299.99757 * 6 5 4 29 29 H 1.09000 * 109.46699 * 299.99608 * 7 5 4 30 30 H 1.09004 * 109.46862 * 59.99835 * 7 5 4 31 31 H 1.08995 * 109.47046 * 180.02562 * 7 5 4 32 32 H 1.07994 * 119.82672 * 359.97438 * 9 8 4 33 33 H 1.08004 * 119.70598 * 179.97438 * 10 9 8 34 34 H 0.97002 * 119.99933 * 179.97438 * 15 14 12 35 35 H 1.07994 * 120.34908 * 179.72122 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0513 0.0000 4 7 3.6192 0.6658 0.0006 5 6 4.7640 1.5801 0.0013 6 6 4.7128 2.4623 -1.2476 7 6 4.7121 2.4614 1.2509 8 6 3.6962 -0.6997 0.0004 9 6 4.7647 -1.6022 0.0003 10 6 4.5325 -2.9407 0.0006 11 6 3.2118 -3.4410 0.0005 12 6 2.9836 -4.8359 0.0003 13 1 2.0602 -5.2321 0.3963 14 6 3.9537 -5.7031 -0.5127 15 7 4.8947 -5.2421 -1.2968 16 14 3.9062 -7.5193 -0.0785 17 1 3.1792 -8.2628 -1.1387 18 1 5.2932 -8.0391 0.0284 19 1 3.2085 -7.6999 1.2198 20 6 2.1269 -2.5524 0.0006 21 6 2.3695 -1.1799 0.0003 22 1 -0.3633 -0.0001 1.0276 23 1 -0.3634 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 5.6892 1.0037 0.0012 26 1 3.7877 3.0386 -1.2477 27 1 5.5648 3.1423 -1.2474 28 1 4.7499 1.8345 -2.1379 29 1 3.7869 3.0377 1.2508 30 1 4.7486 1.8327 2.1406 31 1 5.5635 3.1419 1.2512 32 1 5.7796 -1.2331 0.0000 33 1 5.3653 -3.6284 0.0001 34 1 5.5677 -5.8435 -1.6523 35 1 1.1143 -2.9275 -0.0040 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261201722.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:40 Heat of formation + Delta-G solvation = 49.112850 kcal Electronic energy + Delta-G solvation = -17178.059483 eV Core-core repulsion = 14561.820786 eV Total energy + Delta-G solvation = -2616.238697 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.75192 -38.14996 -36.47494 -35.01677 -32.88318 -31.00935 -30.40851 -28.52095 -28.17141 -26.57137 -23.27550 -22.89129 -22.12344 -19.93343 -19.04812 -17.76335 -17.04174 -16.71426 -15.97741 -15.47981 -15.26841 -15.02025 -14.37994 -14.28219 -14.06925 -13.65364 -13.44482 -13.22257 -13.20047 -13.06361 -12.83048 -12.67895 -12.51931 -12.32992 -12.16788 -11.94306 -11.80336 -11.38779 -11.16447 -10.94567 -10.33267 -9.19416 -8.71073 -8.44623 -6.17230 0.45727 1.01203 1.42673 1.51770 1.58180 1.75873 1.85260 2.26042 2.72832 3.59035 3.68718 3.94881 3.99401 4.05882 4.17158 4.19915 4.51956 4.67803 4.71716 4.81256 4.81679 4.85698 4.91361 4.96125 5.02785 5.06885 5.21332 5.23627 5.31717 5.42927 5.56891 5.76559 5.97019 6.09279 6.21928 6.53827 6.62868 6.93523 7.00214 7.09102 8.40119 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.031294 B = 0.006311 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.514007 B = 4435.337250 C = 5071.372960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.053 3.947 3 N -0.274 5.274 4 N -0.408 5.408 5 C 0.155 3.845 6 C -0.149 4.149 7 C -0.148 4.148 8 C 0.026 3.974 9 C -0.138 4.138 10 C -0.101 4.101 11 C 0.056 3.944 12 C -0.498 4.498 13 H 0.075 0.925 14 C 0.037 3.963 15 N -0.837 5.837 16 Si 0.980 3.020 17 H -0.265 1.265 18 H -0.267 1.267 19 H -0.260 1.260 20 C -0.200 4.200 21 C -0.153 4.153 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.287 0.713 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 8.760 2.019 8.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.123 4.123 3 N -0.090 5.090 4 N -0.201 5.201 5 C 0.054 3.946 6 C -0.207 4.207 7 C -0.206 4.206 8 C -0.085 4.085 9 C -0.160 4.160 10 C -0.122 4.122 11 C 0.053 3.947 12 C -0.528 4.528 13 H 0.093 0.907 14 C -0.177 4.177 15 N -0.464 5.464 16 Si 0.801 3.199 17 H -0.190 1.190 18 H -0.191 1.191 19 H -0.184 1.184 20 C -0.222 4.222 21 C -0.160 4.160 22 H 0.106 0.894 23 H 0.104 0.896 24 H 0.098 0.902 25 H 0.114 0.886 26 H 0.076 0.924 27 H 0.121 0.879 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.120 0.880 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.098 0.902 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.635 10.069 1.872 10.261 hybrid contribution 0.225 -1.842 -0.058 1.857 sum 0.860 8.227 1.814 8.468 Atomic orbital electron populations 1.20170 0.84003 1.03795 1.03705 1.23943 0.97750 0.88570 1.02052 1.76007 0.88178 1.24185 1.20640 1.48113 1.03299 1.02045 1.66600 1.21353 0.85022 0.90477 0.97774 1.22073 1.03699 0.99446 0.95514 1.22064 1.03684 0.99419 0.95438 1.18743 0.95768 0.84786 1.09196 1.19665 0.95880 0.92153 1.08316 1.21076 0.97846 0.93451 0.99870 1.17773 0.91324 0.93953 0.91652 1.19645 1.03911 0.91346 1.37941 0.90699 1.26658 0.93481 1.05709 0.91811 1.69867 1.13501 1.39590 1.23434 0.85222 0.78742 0.76206 0.79697 1.19008 1.19121 1.18382 1.20471 0.97712 0.90030 1.14003 1.19876 0.92178 0.94217 1.09738 0.89435 0.89574 0.90226 0.88577 0.92356 0.87950 0.94025 0.92390 0.93731 0.87988 0.86503 0.86452 0.90236 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.74 10.48 71.23 0.75 -1.00 16 2 C 0.05 2.18 7.44 44.85 0.33 2.52 16 3 N -0.27 -11.13 12.21 -43.56 -0.53 -11.66 16 4 N -0.41 -16.47 3.31 -318.64 -1.06 -17.52 16 5 C 0.15 4.69 3.67 44.99 0.17 4.85 16 6 C -0.15 -3.84 9.44 71.98 0.68 -3.16 16 7 C -0.15 -3.71 9.44 71.98 0.68 -3.03 16 8 C 0.03 1.24 6.87 39.47 0.27 1.51 16 9 C -0.14 -6.53 9.74 22.11 0.22 -6.32 16 10 C -0.10 -5.29 8.60 22.45 0.19 -5.10 16 11 C 0.06 3.05 5.57 -21.30 -0.12 2.94 16 12 C -0.50 -26.90 9.03 23.43 0.21 -26.69 16 13 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 14 C 0.04 1.84 5.12 85.23 0.44 2.28 16 15 N -0.84 -43.41 10.98 21.82 0.24 -43.17 16 16 Si 0.98 38.10 29.59 68.60 2.03 40.13 16 17 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 18 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 19 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 20 C -0.20 -10.23 9.86 23.03 0.23 -10.01 16 21 C -0.15 -7.38 6.32 -20.25 -0.13 -7.51 16 22 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 25 H 0.10 2.77 7.34 -2.38 -0.02 2.75 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.12 4.77 7.56 -2.91 -0.02 4.74 16 33 H 0.12 6.26 6.16 -2.91 -0.02 6.24 16 34 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 35 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -63.23 297.58 5.67 -57.57 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 1.07 Total: 23.37 kcal Atomic # 6 Polarization: -52.62 SS G_CDS: 3.91 Total: -48.71 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -1.35 Total: -72.36 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal Total: -63.23 5.67 -57.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261201722.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.679 kcal (2) G-P(sol) polarization free energy of solvation -63.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds