Wall clock time and date at job start Mon Mar 30 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.36828 * 125.03291 * 2 1 4 4 H 0.97004 * 125.06398 * 0.03577 * 3 2 1 5 5 C 1.37684 * 109.87524 * 180.02562 * 3 2 1 6 6 C 1.39133 * 133.50752 * 180.02562 * 5 3 2 7 7 C 1.37749 * 119.77994 * 179.97438 * 6 5 3 8 8 C 1.50691 * 119.66793 * 179.97438 * 7 6 5 9 9 C 1.38830 * 120.66520 * 359.97438 * 7 6 5 10 10 C 1.36633 * 120.52842 * 0.02562 * 9 7 6 11 11 C 1.39632 * 119.76619 * 359.70207 * 10 9 7 12 12 C 1.34238 * 125.03958 * 180.02562 * 2 1 3 13 13 C 1.50703 * 126.49945 * 359.97438 * 12 2 1 14 14 H 1.08997 * 109.47181 * 345.80469 * 13 12 2 15 15 N 1.46899 * 109.46865 * 225.80628 * 13 12 2 16 16 C 1.50700 * 109.47300 * 105.80432 * 13 12 2 17 17 H 1.07998 * 119.99589 * 359.97438 * 16 13 12 18 18 C 1.37878 * 120.00031 * 179.97438 * 16 13 12 19 19 N 1.31510 * 119.99916 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 119.99891 * 180.02562 * 18 16 13 21 21 H 1.48495 * 109.46909 * 180.02562 * 20 18 16 22 22 H 1.48508 * 109.47168 * 300.00168 * 20 18 16 23 23 H 1.48503 * 109.47091 * 60.00058 * 20 18 16 24 24 H 1.08992 * 109.46919 * 264.69008 * 1 2 3 25 25 H 1.08995 * 109.47313 * 24.69780 * 1 2 3 26 26 H 1.09002 * 109.46979 * 144.69398 * 1 2 3 27 27 H 1.07994 * 120.10568 * 359.97438 * 6 5 3 28 28 H 1.09003 * 109.47110 * 89.99314 * 8 7 6 29 29 H 1.08998 * 109.47397 * 209.99452 * 8 7 6 30 30 H 1.09004 * 109.47357 * 329.99687 * 8 7 6 31 31 H 1.08002 * 119.73410 * 180.02562 * 9 7 6 32 32 H 1.08002 * 120.11566 * 180.02562 * 10 9 7 33 33 H 1.00898 * 111.00332 * 294.22321 * 15 13 12 34 34 H 1.00896 * 111.00123 * 58.18497 * 15 13 12 35 35 H 0.96999 * 120.00175 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1204 0.0000 4 1 1.9622 2.0325 0.0005 5 6 3.6214 0.7604 -0.0006 6 6 4.8098 1.4839 -0.0004 7 6 6.0159 0.8185 -0.0006 8 6 7.3015 1.6047 -0.0010 9 6 6.0590 -0.5691 -0.0005 10 6 4.9042 -1.2994 -0.0007 11 6 3.6705 -0.6455 0.0053 12 6 2.2777 -1.0991 -0.0005 13 6 1.8005 -2.5286 -0.0006 14 1 0.7405 -2.5578 0.2518 15 7 2.5616 -3.2989 0.9920 16 6 2.0079 -3.1274 -1.3679 17 1 2.4416 -2.5322 -2.1578 18 6 1.6442 -4.4350 -1.6102 19 7 1.1157 -5.1596 -0.6483 20 14 1.9020 -5.1774 -3.3048 21 1 1.4317 -6.5859 -3.3049 22 1 1.1326 -4.3990 -4.3086 23 1 3.3462 -5.1372 -3.6483 24 1 -0.3633 -0.0951 1.0232 25 1 -0.3634 0.9336 -0.4294 26 1 -0.3633 -0.8387 -0.5939 27 1 4.7866 2.5636 0.0000 28 1 7.6116 1.7944 1.0266 29 1 8.0757 1.0349 -0.5148 30 1 7.1471 2.5535 -0.5149 31 1 7.0130 -1.0754 -0.0003 32 1 4.9455 -2.3786 -0.0002 33 1 3.5335 -3.3663 0.7297 34 1 2.4625 -2.8994 1.9132 35 1 0.9814 -4.7739 0.2315 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309342102.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:56 Heat of formation + Delta-G solvation = 40.035965 kcal Electronic energy + Delta-G solvation = -17397.762343 eV Core-core repulsion = 14781.130042 eV Total energy + Delta-G solvation = -2616.632300 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.83359 -37.13262 -34.93692 -32.03732 -31.55049 -30.49832 -28.75864 -28.13818 -25.61503 -24.46288 -22.03966 -21.85147 -20.20595 -18.53332 -17.10567 -16.48125 -15.72619 -14.71710 -14.44714 -14.24878 -13.76544 -13.55604 -13.39659 -13.31664 -12.99840 -12.60924 -12.36566 -12.00637 -11.84016 -11.68064 -11.36230 -10.94739 -10.71645 -10.67023 -10.65002 -10.03399 -9.94003 -9.13379 -8.43417 -8.22669 -7.62776 -7.41427 -6.85521 -6.06751 -3.88788 1.56903 2.06195 3.28266 3.53241 3.54948 3.55374 3.73482 4.34628 4.68848 5.06988 5.20671 5.26732 5.42119 5.50919 5.55488 5.66571 5.68302 5.85976 5.87590 5.92007 5.96804 6.12988 6.19878 6.36226 6.45212 6.51545 6.62185 6.91290 7.04966 7.28144 7.33811 7.51330 7.71806 8.04330 8.14187 8.46183 8.80914 8.92737 9.19207 9.93379 11.32230 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022518 B = 0.007769 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.144425 B = 3603.105697 C = 4249.087465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.041 3.959 3 N -0.600 5.600 4 H 0.404 0.596 5 C 0.096 3.904 6 C -0.142 4.142 7 C -0.076 4.076 8 C -0.106 4.106 9 C -0.160 4.160 10 C -0.052 4.052 11 C -0.097 4.097 12 C -0.138 4.138 13 C 0.269 3.731 14 H 0.035 0.965 15 N -0.828 5.828 16 C -0.603 4.603 17 H 0.043 0.957 18 C 0.036 3.964 19 N -0.895 5.895 20 Si 1.060 2.940 21 H -0.284 1.284 22 H -0.292 1.292 23 H -0.290 1.290 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.110 0.890 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.326 0.674 34 H 0.299 0.701 35 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.617 13.231 2.466 14.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.064 4.064 3 N -0.204 5.204 4 H 0.239 0.761 5 C -0.012 4.012 6 C -0.163 4.163 7 C -0.078 4.078 8 C -0.162 4.162 9 C -0.180 4.180 10 C -0.071 4.071 11 C -0.102 4.102 12 C -0.146 4.146 13 C 0.159 3.841 14 H 0.053 0.947 15 N -0.355 5.355 16 C -0.642 4.642 17 H 0.062 0.938 18 C -0.173 4.173 19 N -0.530 5.530 20 Si 0.890 3.110 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.217 1.217 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.128 0.872 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.133 0.867 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.109 0.891 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.817 11.290 1.402 12.355 hybrid contribution 0.678 2.951 0.880 3.153 sum 5.495 14.241 2.282 15.434 Atomic orbital electron populations 1.20342 0.88305 1.02926 1.02473 1.20095 0.93162 0.85297 1.07893 1.41599 1.03859 1.07624 1.67349 0.76060 1.18198 0.84494 0.94457 1.04061 1.19669 0.89429 0.97995 1.09225 1.19397 0.93781 0.93794 1.00783 1.20697 0.94635 0.99220 1.01695 1.20420 0.97824 0.93033 1.06703 1.20425 0.90497 0.99841 0.96296 1.19159 0.93779 0.91424 1.05833 1.21912 0.89886 0.97780 1.05039 1.17745 0.92914 0.81046 0.92383 0.94698 1.59557 1.15734 1.56817 1.03432 1.21717 1.48071 0.99771 0.94605 0.93823 1.25564 0.93666 0.93862 1.04200 1.70546 1.38095 1.39474 1.04875 0.83697 0.76189 0.76111 0.75009 1.20982 1.21844 1.21715 0.91468 0.92545 0.89194 0.87217 0.91735 0.91757 0.92192 0.86651 0.85800 0.86095 0.89103 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 9.83 36.00 0.35 -0.95 16 2 C 0.04 0.77 7.08 -81.77 -0.58 0.19 16 3 N -0.60 -9.94 6.07 -6.95 -0.04 -9.99 16 4 H 0.40 5.15 8.96 -40.82 -0.37 4.79 16 5 C 0.10 1.75 7.28 -83.99 -0.61 1.14 16 6 C -0.14 -2.23 9.71 -39.43 -0.38 -2.62 16 7 C -0.08 -1.15 5.88 -104.59 -0.61 -1.76 16 8 C -0.11 -1.17 9.99 36.00 0.36 -0.81 16 9 C -0.16 -2.63 9.62 -39.94 -0.38 -3.01 16 10 C -0.05 -1.01 9.58 -39.64 -0.38 -1.39 16 11 C -0.10 -2.01 6.19 -105.14 -0.65 -2.66 16 12 C -0.14 -3.04 5.11 -102.71 -0.52 -3.57 16 13 C 0.27 6.70 2.53 -70.02 -0.18 6.52 16 14 H 0.04 0.93 7.03 -51.93 -0.36 0.56 16 15 N -0.83 -19.58 7.76 -6.65 -0.05 -19.63 16 16 C -0.60 -16.99 8.66 -34.44 -0.30 -17.28 16 17 H 0.04 1.28 7.74 -52.49 -0.41 0.87 16 18 C 0.04 1.04 5.39 -17.82 -0.10 0.95 16 19 N -0.90 -27.08 13.50 55.43 0.75 -26.33 16 20 Si 1.06 25.71 29.90 -169.99 -5.08 20.62 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 1.58 7.58 -51.93 -0.39 1.19 16 27 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.12 2.45 6.36 -52.49 -0.33 2.12 16 33 H 0.33 7.61 6.59 -39.29 -0.26 7.35 16 34 H 0.30 6.38 9.01 -39.29 -0.35 6.03 16 35 H 0.29 8.78 6.40 -40.82 -0.26 8.51 16 LS Contribution 291.76 15.07 4.40 4.40 Total: -1.00 -31.97 291.76 -8.50 -40.47 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -4.49 Total: 15.72 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -3.99 Total: -25.26 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.65 Total: -55.96 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.97 -8.50 -40.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309342102.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.507 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds