Wall clock time and date at job start Mon Mar 30 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.36829 * 125.03198 * 2 1 4 4 H 0.96996 * 125.06734 * 359.96972 * 3 2 1 5 5 C 1.37690 * 109.87320 * 180.02562 * 3 2 1 6 6 C 1.39126 * 133.50727 * 180.02562 * 5 3 2 7 7 C 1.37744 * 119.77558 * 179.97438 * 6 5 3 8 8 C 1.38830 * 120.67021 * 0.02562 * 7 6 5 9 9 C 1.50693 * 119.73590 * 180.02562 * 8 7 6 10 10 C 1.36619 * 120.52825 * 359.97438 * 8 7 6 11 11 C 1.39634 * 119.76620 * 359.70292 * 10 8 7 12 12 C 1.34239 * 125.03585 * 179.97438 * 2 1 3 13 13 C 1.50703 * 126.49965 * 0.02562 * 12 2 1 14 14 H 1.08998 * 109.47145 * 195.02141 * 13 12 2 15 15 N 1.46900 * 109.47047 * 315.02365 * 13 12 2 16 16 C 1.50700 * 109.47148 * 75.02119 * 13 12 2 17 17 H 1.08002 * 119.99770 * 0.02562 * 16 13 12 18 18 C 1.37871 * 120.00083 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00147 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 120.00278 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46793 * 300.00001 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00094 * 20 18 16 24 24 H 1.09001 * 109.47163 * 269.99946 * 1 2 3 25 25 H 1.08991 * 109.46991 * 29.99912 * 1 2 3 26 26 H 1.08998 * 109.46904 * 150.00171 * 1 2 3 27 27 H 1.07997 * 120.10848 * 359.97438 * 6 5 3 28 28 H 1.08004 * 119.66486 * 180.02562 * 7 6 5 29 29 H 1.09008 * 109.47595 * 89.99703 * 9 8 7 30 30 H 1.09001 * 109.47412 * 209.99367 * 9 8 7 31 31 H 1.09004 * 109.47376 * 329.99534 * 9 8 7 32 32 H 1.07997 * 120.11982 * 180.02562 * 10 8 7 33 33 H 1.00907 * 110.99867 * 296.04432 * 15 13 12 34 34 H 1.00896 * 111.00376 * 59.99771 * 15 13 12 35 35 H 0.97005 * 119.99661 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2925 1.1204 0.0000 4 1 1.9624 2.0324 -0.0004 5 6 3.6215 0.7603 -0.0006 6 6 4.8099 1.4838 -0.0004 7 6 6.0159 0.8183 -0.0006 8 6 6.0590 -0.5693 -0.0016 9 6 7.3901 -1.2757 -0.0012 10 6 4.9043 -1.2995 -0.0018 11 6 3.6706 -0.6456 0.0053 12 6 2.2777 -1.0991 0.0005 13 6 1.8004 -2.5286 0.0006 14 1 2.6267 -3.1875 0.2674 15 7 0.7157 -2.6825 0.9792 16 6 1.2935 -2.8890 -1.3721 17 1 1.3152 -2.1564 -2.1653 18 6 0.8030 -4.1543 -1.6155 19 7 0.7770 -5.0466 -0.6497 20 14 0.1753 -4.6014 -3.3172 21 1 -0.2940 -6.0102 -3.3174 22 1 -0.9506 -3.7040 -3.6809 23 1 1.2721 -4.4454 -4.3061 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 4.7868 2.5636 0.0000 28 1 6.9373 1.3818 0.0000 29 1 7.7105 -1.4468 1.0266 30 1 7.2941 -2.2319 -0.5157 31 1 8.1286 -0.6596 -0.5142 32 1 4.9455 -2.3787 -0.0021 33 1 1.0469 -2.5090 1.9164 34 1 -0.0628 -2.0816 0.7537 35 1 1.1033 -4.8146 0.2338 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309364135.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:00 Heat of formation + Delta-G solvation = 42.779831 kcal Electronic energy + Delta-G solvation = -17399.747245 eV Core-core repulsion = 14783.233928 eV Total energy + Delta-G solvation = -2616.513317 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.85279 -37.21506 -35.01092 -32.00500 -31.21105 -30.77230 -29.31686 -27.19039 -25.52620 -25.09053 -22.28280 -21.14752 -20.56635 -18.52941 -17.25093 -16.58086 -15.53571 -14.80072 -14.38243 -14.28435 -13.77136 -13.58608 -13.41046 -13.29127 -13.01211 -12.44422 -12.15645 -12.05022 -11.83991 -11.72107 -11.49615 -10.95558 -10.69512 -10.64546 -10.36558 -10.15983 -9.98955 -9.21784 -8.49545 -8.22333 -7.56928 -7.43486 -6.87651 -6.07195 -3.89384 1.57008 2.01165 3.29171 3.52009 3.53746 3.55832 3.72260 4.31703 4.67759 5.07568 5.19829 5.30440 5.43554 5.54006 5.59860 5.64336 5.83744 5.84821 5.87355 5.90702 6.11451 6.13649 6.21627 6.37484 6.47017 6.52225 6.62541 6.80005 7.09067 7.20076 7.34185 7.50691 7.71488 8.02325 8.16747 8.43111 8.78269 8.88742 9.16956 9.93227 11.31496 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022369 B = 0.007713 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.413853 B = 3629.379323 C = 4266.100546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.050 3.950 3 N -0.600 5.600 4 H 0.404 0.596 5 C 0.089 3.911 6 C -0.137 4.137 7 C -0.105 4.105 8 C -0.130 4.130 9 C -0.104 4.104 10 C -0.057 4.057 11 C -0.096 4.096 12 C -0.140 4.140 13 C 0.270 3.730 14 H 0.033 0.967 15 N -0.833 5.833 16 C -0.601 4.601 17 H 0.043 0.957 18 C 0.037 3.963 19 N -0.894 5.894 20 Si 1.061 2.939 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.291 1.291 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.105 0.895 27 H 0.111 0.889 28 H 0.117 0.883 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.120 0.880 33 H 0.299 0.701 34 H 0.326 0.674 35 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.014 12.062 2.474 13.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.055 4.055 3 N -0.204 5.204 4 H 0.240 0.760 5 C -0.018 4.018 6 C -0.158 4.158 7 C -0.124 4.124 8 C -0.132 4.132 9 C -0.160 4.160 10 C -0.076 4.076 11 C -0.102 4.102 12 C -0.149 4.149 13 C 0.160 3.840 14 H 0.051 0.949 15 N -0.362 5.362 16 C -0.640 4.640 17 H 0.062 0.938 18 C -0.173 4.173 19 N -0.528 5.528 20 Si 0.890 3.110 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.218 1.218 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.123 0.877 27 H 0.129 0.871 28 H 0.135 0.865 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.138 0.862 33 H 0.110 0.890 34 H 0.141 0.859 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.211 10.120 1.354 11.463 hybrid contribution 0.721 3.009 0.981 3.246 sum 5.931 13.130 2.336 14.595 Atomic orbital electron populations 1.20569 0.88352 1.04106 1.01993 1.19982 0.93120 0.85137 1.07221 1.41609 1.03892 1.07671 1.67248 0.76011 1.18224 0.84547 0.94432 1.04623 1.19845 0.89882 0.98199 1.07895 1.20514 0.96252 0.93632 1.01990 1.19262 0.94952 0.93490 1.05491 1.20660 0.93804 1.00036 1.01545 1.20212 0.90099 0.99578 0.97677 1.19294 0.93935 0.91635 1.05322 1.21889 0.89529 0.97989 1.05479 1.17673 0.89750 0.83986 0.92554 0.94879 1.59615 1.11000 1.62085 1.03523 1.21688 1.48255 1.00170 0.93920 0.93828 1.25564 0.94738 0.92736 1.04251 1.70544 1.41223 1.36498 1.04555 0.83696 0.76230 0.76030 0.75039 1.20967 1.21776 1.21799 0.91734 0.92524 0.87663 0.87088 0.86535 0.92031 0.91837 0.92281 0.86161 0.89045 0.85937 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 8.66 36.01 0.31 -1.20 16 2 C 0.05 0.96 7.03 -81.77 -0.58 0.39 16 3 N -0.60 -9.98 6.07 -6.95 -0.04 -10.03 16 4 H 0.40 5.20 8.96 -40.82 -0.37 4.83 16 5 C 0.09 1.63 7.28 -83.98 -0.61 1.02 16 6 C -0.14 -2.12 10.08 -39.43 -0.40 -2.52 16 7 C -0.10 -1.55 9.66 -39.54 -0.38 -1.93 16 8 C -0.13 -2.10 5.84 -104.99 -0.61 -2.71 16 9 C -0.10 -1.31 9.99 36.00 0.36 -0.95 16 10 C -0.06 -1.10 9.67 -39.65 -0.38 -1.49 16 11 C -0.10 -2.01 6.35 -105.13 -0.67 -2.68 16 12 C -0.14 -3.12 5.20 -102.71 -0.53 -3.65 16 13 C 0.27 6.77 2.50 -70.01 -0.18 6.59 16 14 H 0.03 0.92 8.01 -51.93 -0.42 0.50 16 15 N -0.83 -19.16 7.72 -6.65 -0.05 -19.21 16 16 C -0.60 -16.79 8.05 -34.44 -0.28 -17.07 16 17 H 0.04 1.25 7.74 -52.49 -0.41 0.85 16 18 C 0.04 1.04 5.39 -17.82 -0.10 0.95 16 19 N -0.89 -27.01 13.51 55.43 0.75 -26.26 16 20 Si 1.06 25.47 29.90 -169.99 -5.08 20.38 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H 0.06 0.93 7.97 -51.93 -0.41 0.51 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.10 2.00 6.01 -51.93 -0.31 1.69 16 27 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 28 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 29 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 30 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 33 H 0.30 6.25 9.06 -39.29 -0.36 5.89 16 34 H 0.33 7.00 5.38 -39.29 -0.21 6.79 16 35 H 0.29 8.77 6.39 -40.82 -0.26 8.51 16 LS Contribution 290.36 15.07 4.38 4.38 Total: -1.00 -31.93 290.36 -8.59 -40.51 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -4.49 Total: 15.49 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -4.04 Total: -25.26 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.66 Total: -55.50 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.38 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.93 -8.59 -40.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309364135.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.292 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds