Wall clock time and date at job start Mon Mar 30 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.36829 * 125.03198 * 2 1 4 4 H 0.96996 * 125.06734 * 359.96972 * 3 2 1 5 5 C 1.37690 * 109.87320 * 180.02562 * 3 2 1 6 6 C 1.39126 * 133.50727 * 180.02562 * 5 3 2 7 7 C 1.37744 * 119.77558 * 179.97438 * 6 5 3 8 8 C 1.38830 * 120.67021 * 0.02562 * 7 6 5 9 9 C 1.50693 * 119.73590 * 180.02562 * 8 7 6 10 10 C 1.36619 * 120.52825 * 359.97438 * 8 7 6 11 11 C 1.39634 * 119.76620 * 359.70292 * 10 8 7 12 12 C 1.34239 * 125.03585 * 179.97438 * 2 1 3 13 13 C 1.50703 * 126.49965 * 0.02562 * 12 2 1 14 14 H 1.08998 * 109.47145 * 195.02141 * 13 12 2 15 15 N 1.46900 * 109.47047 * 315.02365 * 13 12 2 16 16 C 1.50700 * 109.47148 * 75.02119 * 13 12 2 17 17 H 1.08002 * 119.99770 * 0.02562 * 16 13 12 18 18 C 1.37871 * 120.00083 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00147 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 120.00278 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46793 * 300.00001 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00094 * 20 18 16 24 24 H 1.09001 * 109.47163 * 269.99946 * 1 2 3 25 25 H 1.08991 * 109.46991 * 29.99912 * 1 2 3 26 26 H 1.08998 * 109.46904 * 150.00171 * 1 2 3 27 27 H 1.07997 * 120.10848 * 359.97438 * 6 5 3 28 28 H 1.08004 * 119.66486 * 180.02562 * 7 6 5 29 29 H 1.09008 * 109.47595 * 89.99703 * 9 8 7 30 30 H 1.09001 * 109.47412 * 209.99367 * 9 8 7 31 31 H 1.09004 * 109.47376 * 329.99534 * 9 8 7 32 32 H 1.07997 * 120.11982 * 180.02562 * 10 8 7 33 33 H 1.00907 * 110.99867 * 296.04432 * 15 13 12 34 34 H 1.00896 * 111.00376 * 59.99771 * 15 13 12 35 35 H 0.97005 * 119.99661 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2925 1.1204 0.0000 4 1 1.9624 2.0324 -0.0004 5 6 3.6215 0.7603 -0.0006 6 6 4.8099 1.4838 -0.0004 7 6 6.0159 0.8183 -0.0006 8 6 6.0590 -0.5693 -0.0016 9 6 7.3901 -1.2757 -0.0012 10 6 4.9043 -1.2995 -0.0018 11 6 3.6706 -0.6456 0.0053 12 6 2.2777 -1.0991 0.0005 13 6 1.8004 -2.5286 0.0006 14 1 2.6267 -3.1875 0.2674 15 7 0.7157 -2.6825 0.9792 16 6 1.2935 -2.8890 -1.3721 17 1 1.3152 -2.1564 -2.1653 18 6 0.8030 -4.1543 -1.6155 19 7 0.7770 -5.0466 -0.6497 20 14 0.1753 -4.6014 -3.3172 21 1 -0.2940 -6.0102 -3.3174 22 1 -0.9506 -3.7040 -3.6809 23 1 1.2721 -4.4454 -4.3061 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 4.7868 2.5636 0.0000 28 1 6.9373 1.3818 0.0000 29 1 7.7105 -1.4468 1.0266 30 1 7.2941 -2.2319 -0.5157 31 1 8.1286 -0.6596 -0.5142 32 1 4.9455 -2.3787 -0.0021 33 1 1.0469 -2.5090 1.9164 34 1 -0.0628 -2.0816 0.7537 35 1 1.1033 -4.8146 0.2338 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309364135.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:00 Heat of formation + Delta-G solvation = 21.628409 kcal Electronic energy + Delta-G solvation = -17400.664440 eV Core-core repulsion = 14783.233928 eV Total energy + Delta-G solvation = -2617.430512 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.25286 -38.54926 -36.86414 -33.75454 -32.70280 -32.22780 -30.76104 -28.71842 -27.23557 -26.57161 -24.13340 -22.56717 -21.88736 -20.16984 -18.81497 -18.42985 -16.99770 -16.34662 -15.83054 -15.80098 -15.53321 -15.24298 -14.77030 -14.62982 -14.39173 -14.03280 -13.57019 -13.50824 -13.41374 -13.10289 -12.89018 -12.59130 -12.46135 -12.02349 -11.90359 -11.87025 -11.71724 -10.94044 -10.44995 -10.25405 -9.30451 -8.89533 -8.43687 -8.25045 -6.17191 0.22088 0.69261 1.54641 1.63010 1.79691 1.82684 2.24098 2.66233 2.96196 3.36067 3.78968 3.93213 4.09909 4.23377 4.29915 4.39466 4.44314 4.51192 4.54455 4.66022 4.83031 4.87028 4.95438 5.05532 5.08185 5.14969 5.23788 5.36306 5.56760 5.80046 5.87353 5.97332 6.07389 6.27644 6.31752 6.74915 6.82306 6.85824 7.12580 7.73241 9.02439 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022369 B = 0.007713 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.413853 B = 3629.379323 C = 4266.100546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.068 3.932 3 N -0.583 5.583 4 H 0.426 0.574 5 C 0.076 3.924 6 C -0.127 4.127 7 C -0.102 4.102 8 C -0.122 4.122 9 C -0.103 4.103 10 C -0.100 4.100 11 C -0.134 4.134 12 C -0.197 4.197 13 C 0.281 3.719 14 H -0.013 1.013 15 N -0.838 5.838 16 C -0.604 4.604 17 H 0.030 0.970 18 C -0.013 4.013 19 N -0.921 5.921 20 Si 1.107 2.893 21 H -0.285 1.285 22 H -0.271 1.271 23 H -0.282 1.282 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.152 0.848 28 H 0.160 0.840 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.311 0.689 34 H 0.335 0.665 35 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.743 15.285 1.988 16.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 N -0.189 5.189 4 H 0.265 0.735 5 C -0.031 4.031 6 C -0.147 4.147 7 C -0.121 4.121 8 C -0.123 4.123 9 C -0.160 4.160 10 C -0.118 4.118 11 C -0.140 4.140 12 C -0.206 4.206 13 C 0.171 3.829 14 H 0.005 0.995 15 N -0.369 5.369 16 C -0.643 4.643 17 H 0.048 0.952 18 C -0.216 4.216 19 N -0.557 5.557 20 Si 0.930 3.070 21 H -0.210 1.210 22 H -0.196 1.196 23 H -0.208 1.208 24 H 0.105 0.895 25 H 0.109 0.891 26 H 0.093 0.907 27 H 0.169 0.831 28 H 0.178 0.822 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.122 0.878 34 H 0.152 0.848 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.948 13.397 0.877 14.684 hybrid contribution 0.611 2.096 1.185 2.484 sum 6.559 15.493 2.061 16.950 Atomic orbital electron populations 1.20574 0.86459 1.04233 1.03461 1.20205 0.94224 0.85100 1.04419 1.41464 1.03192 1.08068 1.66173 0.73470 1.18509 0.85908 0.93415 1.05266 1.20351 0.88715 1.00148 1.05497 1.21033 0.97897 0.92985 1.00191 1.19693 0.95073 0.94616 1.02906 1.20738 0.92607 0.99887 1.02773 1.20253 0.91499 0.98759 1.01326 1.19571 0.93767 0.93690 1.06935 1.21583 0.91431 0.97179 1.10395 1.17170 0.88555 0.85624 0.91513 0.99473 1.59366 1.10940 1.62757 1.03803 1.21928 1.47420 0.99845 0.95064 0.95194 1.26937 0.94638 0.92988 1.07034 1.70662 1.43388 1.37091 1.04559 0.83085 0.76603 0.76030 0.71260 1.21023 1.19594 1.20792 0.89525 0.89101 0.90676 0.83075 0.82230 0.90586 0.92697 0.89417 0.88858 0.87826 0.84846 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.79 8.66 71.24 0.62 -2.18 16 2 C 0.07 2.55 7.03 40.87 0.29 2.84 16 3 N -0.58 -18.16 6.07 -175.90 -1.07 -19.23 16 4 H 0.43 9.42 8.96 -92.71 -0.83 8.59 16 5 C 0.08 2.66 7.28 39.03 0.28 2.95 16 6 C -0.13 -3.44 10.08 22.37 0.23 -3.21 16 7 C -0.10 -2.65 9.66 22.29 0.22 -2.43 16 8 C -0.12 -3.78 5.84 -20.10 -0.12 -3.90 16 9 C -0.10 -2.44 9.99 71.23 0.71 -1.72 16 10 C -0.10 -4.04 9.67 22.23 0.22 -3.83 16 11 C -0.13 -5.80 6.35 -20.20 -0.13 -5.93 16 12 C -0.20 -9.11 5.20 -18.63 -0.10 -9.21 16 13 C 0.28 15.02 2.50 43.42 0.11 15.13 16 14 H -0.01 -0.77 8.01 -2.39 -0.02 -0.79 16 15 N -0.84 -40.38 7.72 -174.95 -1.35 -41.73 16 16 C -0.60 -35.22 8.05 25.60 0.21 -35.02 16 17 H 0.03 1.78 7.74 -2.91 -0.02 1.76 16 18 C -0.01 -0.76 5.39 84.65 0.46 -0.30 16 19 N -0.92 -57.95 13.51 21.45 0.29 -57.66 16 20 Si 1.11 52.22 29.90 68.60 2.05 54.27 16 21 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H 0.09 2.31 7.97 -2.39 -0.02 2.30 16 25 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.07 2.85 6.01 -2.39 -0.01 2.84 16 27 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 28 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 29 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.05 1.38 8.08 -2.39 -0.02 1.36 16 31 H 0.09 1.57 8.08 -2.39 -0.02 1.55 16 32 H 0.09 4.09 8.06 -2.91 -0.02 4.06 16 33 H 0.31 13.62 9.06 -89.69 -0.81 12.81 16 34 H 0.34 14.82 5.38 -89.70 -0.48 14.34 16 35 H 0.28 17.71 6.39 -92.70 -0.59 17.12 16 Total: -1.00 -73.74 290.36 2.09 -71.66 By element: Atomic # 1 Polarization: 40.33 SS G_CDS: -0.82 Total: 39.50 kcal Atomic # 6 Polarization: -49.79 SS G_CDS: 2.98 Total: -46.81 kcal Atomic # 7 Polarization: -116.49 SS G_CDS: -2.13 Total: -118.62 kcal Atomic # 14 Polarization: 52.22 SS G_CDS: 2.05 Total: 54.27 kcal Total: -73.74 2.09 -71.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309364135.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.286 kcal (2) G-P(sol) polarization free energy of solvation -73.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds