Wall clock time and date at job start Mon Mar 30 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86804 * 119.99807 * 2 1 4 4 H 1.48496 * 109.47158 * 240.00032 * 3 2 1 5 5 H 1.48500 * 109.47423 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47046 * 120.00179 * 3 2 1 7 7 C 1.40009 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00009 * 179.97438 * 7 2 1 9 9 C 1.41452 * 119.99864 * 359.97438 * 7 2 1 10 10 C 1.40405 * 119.79777 * 179.97438 * 9 7 2 11 11 C 1.39017 * 118.88350 * 180.02562 * 10 9 7 12 12 N 1.39250 * 120.78600 * 179.97438 * 11 10 9 13 13 C 1.46502 * 119.99743 * 180.02562 * 12 11 10 14 14 H 1.08993 * 110.54201 * 36.15603 * 13 12 11 15 15 C 1.54892 * 110.48274 * 273.54304 * 13 12 11 16 16 C 1.54891 * 102.74959 * 279.26879 * 15 13 12 17 17 C 1.54266 * 104.31343 * 321.99283 * 16 15 13 18 18 H 1.08999 * 117.41538 * 243.70015 * 17 16 15 19 19 C 1.53165 * 118.09930 * 87.61021 * 17 16 15 20 20 C 1.52998 * 60.49458 * 266.60163 * 19 17 16 21 21 H 1.08999 * 119.29368 * 247.80990 * 20 19 17 22 22 C 1.39717 * 118.43037 * 0.25284 * 11 10 9 23 23 C 1.38447 * 119.47131 * 359.49868 * 22 11 10 24 24 N 1.31527 * 121.11092 * 0.51534 * 23 22 11 25 25 H 0.97007 * 120.00124 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.55682 * 0.02562 * 10 9 7 27 27 H 0.96995 * 119.99733 * 0.02562 * 12 11 10 28 28 H 1.09000 * 110.75513 * 160.95739 * 15 13 12 29 29 H 1.09002 * 110.91731 * 37.65535 * 15 13 12 30 30 H 1.09002 * 110.48740 * 80.73781 * 16 15 13 31 31 H 1.08998 * 110.48604 * 203.24665 * 16 15 13 32 32 H 1.09003 * 117.38870 * 158.92736 * 19 17 16 33 33 H 1.08998 * 117.44087 * 14.24753 * 19 17 16 34 34 H 1.08004 * 120.26310 * 179.74541 * 22 11 10 35 35 H 1.08003 * 119.44876 * 180.25384 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6965 1.2126 7 6 2.0075 -1.2125 -0.0005 8 1 3.0875 -1.2125 -0.0010 9 6 1.3003 -2.4375 -0.0005 10 6 2.0066 -3.6510 -0.0016 11 6 1.2924 -4.8436 -0.0022 12 7 1.9526 -6.0697 -0.0038 13 6 1.1827 -7.3161 -0.0049 14 1 0.2804 -7.2078 -0.6066 15 6 0.8221 -7.7317 1.4430 16 6 2.1240 -8.4090 1.9385 17 6 2.6450 -9.1800 0.7081 18 1 2.6941 -10.2665 0.7804 19 6 3.5532 -8.4378 -0.2769 20 6 2.0449 -8.4827 -0.5297 21 1 1.6636 -9.0446 -1.3823 22 6 -0.1034 -4.7831 -0.0070 23 6 -0.7317 -3.5494 -0.0006 24 7 -0.0367 -2.4328 -0.0001 25 1 -0.4851 0.8401 0.0004 26 1 3.0866 -3.6576 -0.0021 27 1 2.9221 -6.0984 -0.0042 28 1 -0.0069 -8.4394 1.4466 29 1 0.5854 -6.8586 2.0510 30 1 2.8488 -7.6581 2.2531 31 1 1.9089 -9.0965 2.7565 32 1 4.1896 -9.0410 -0.9244 33 1 3.9800 -7.4896 0.0500 34 1 -0.6876 -5.6915 -0.0117 35 1 -1.8108 -3.5031 -0.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309546902.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:15 Heat of formation + Delta-G solvation = 61.204995 kcal Electronic energy + Delta-G solvation = -17017.719309 eV Core-core repulsion = 14402.004967 eV Total energy + Delta-G solvation = -2615.714342 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.86880 -37.89920 -34.52651 -33.09852 -31.20954 -29.82048 -28.86732 -26.63353 -25.36901 -22.72402 -21.62169 -21.17668 -19.86143 -19.17230 -17.57202 -16.38230 -15.80095 -15.40548 -14.67738 -14.15878 -13.93744 -13.36269 -13.26638 -12.95532 -12.52939 -12.29592 -12.11021 -11.56809 -11.50577 -11.16932 -11.08545 -10.91823 -10.79475 -10.55795 -10.32908 -10.23058 -9.80887 -9.63729 -9.60918 -9.04778 -7.51577 -7.40108 -6.60224 -6.27315 -4.42517 2.89196 3.13578 3.15993 3.24694 3.41364 3.56324 4.01720 4.19942 4.50767 4.70485 4.86721 4.90475 5.18348 5.23654 5.52430 5.55932 5.61398 5.76753 5.90702 5.97417 6.08579 6.11543 6.16269 6.20394 6.30815 6.40782 6.55167 6.78938 7.00385 7.17583 7.27998 7.59166 7.69711 7.77099 8.33198 8.48394 8.56494 8.85567 9.10034 10.30635 10.46461 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.043724 B = 0.005093 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.226924 B = 5496.005469 C = 5851.145465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.437 4.437 8 H 0.079 0.921 9 C 0.283 3.717 10 C -0.346 4.346 11 C 0.256 3.744 12 N -0.744 5.744 13 C 0.183 3.817 14 H 0.082 0.918 15 C -0.138 4.138 16 C -0.094 4.094 17 C -0.163 4.163 18 H 0.108 0.892 19 C -0.153 4.153 20 C -0.172 4.172 21 H 0.113 0.887 22 C -0.371 4.371 23 C 0.148 3.852 24 N -0.507 5.507 25 H 0.271 0.729 26 H 0.092 0.908 27 H 0.387 0.613 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.210 -12.842 0.971 13.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.153 4.153 3 Si 0.729 3.271 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.468 4.468 8 H 0.097 0.903 9 C 0.158 3.842 10 C -0.373 4.373 11 C 0.151 3.849 12 N -0.378 5.378 13 C 0.076 3.924 14 H 0.100 0.900 15 C -0.177 4.177 16 C -0.131 4.131 17 C -0.181 4.181 18 H 0.126 0.874 19 C -0.190 4.190 20 C -0.191 4.191 21 H 0.131 0.869 22 C -0.399 4.399 23 C -0.019 4.019 24 N -0.221 5.221 25 H 0.082 0.918 26 H 0.110 0.890 27 H 0.223 0.777 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.466 -11.960 0.969 12.250 hybrid contribution 1.195 -0.297 -0.061 1.232 sum 3.660 -12.257 0.907 12.824 Atomic orbital electron populations 1.70153 1.07090 1.27514 1.29081 1.26046 0.94848 1.00855 0.93583 0.86453 0.80109 0.80782 0.79775 1.19045 1.20288 1.19054 1.19528 0.94015 0.89468 1.43788 0.90259 1.18323 0.88165 0.91204 0.86458 1.21139 0.97902 0.91930 1.26346 1.17660 0.91642 0.84389 0.91211 1.44474 1.07054 1.02019 1.84219 1.20962 0.93938 0.82752 0.94719 0.89960 1.23153 0.96847 1.00351 0.97387 1.21923 0.97251 0.98287 0.95654 1.23342 1.04681 0.98436 0.91643 0.87384 1.22952 0.92469 1.01802 1.01770 1.23578 0.94887 1.00542 1.00073 0.86923 1.20856 0.92337 0.98085 1.28604 1.22287 0.98444 0.88505 0.92624 1.68759 1.07176 1.26473 1.19734 0.91793 0.88978 0.77715 0.91304 0.90485 0.91494 0.91662 0.88452 0.88918 0.89018 0.86761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.70 11.46 55.55 0.64 -19.06 16 2 C 0.07 1.88 5.50 -17.35 -0.10 1.79 16 3 Si 0.90 19.11 29.56 -169.99 -5.02 14.08 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.44 -12.12 9.14 -37.70 -0.34 -12.47 16 8 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 9 C 0.28 8.02 6.55 -85.01 -0.56 7.46 16 10 C -0.35 -8.79 9.72 -38.48 -0.37 -9.17 16 11 C 0.26 5.80 6.69 -83.65 -0.56 5.24 16 12 N -0.74 -13.30 5.26 -50.44 -0.27 -13.57 16 13 C 0.18 2.73 2.82 -66.27 -0.19 2.54 16 14 H 0.08 1.31 6.66 -51.93 -0.35 0.96 16 15 C -0.14 -1.89 6.58 -24.74 -0.16 -2.05 16 16 C -0.09 -1.12 6.57 -25.07 -0.16 -1.28 16 17 C -0.16 -1.78 6.97 -89.23 -0.62 -2.40 16 18 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 19 C -0.15 -1.70 9.65 -26.65 -0.26 -1.96 16 20 C -0.17 -2.09 6.83 -89.32 -0.61 -2.70 16 21 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 22 C -0.37 -8.47 9.30 -38.95 -0.36 -8.84 16 23 C 0.15 3.71 11.17 -17.60 -0.20 3.52 16 24 N -0.51 -14.45 7.86 -11.21 -0.09 -14.54 16 25 H 0.27 6.75 8.29 -40.82 -0.34 6.41 16 26 H 0.09 2.21 8.06 -52.48 -0.42 1.79 16 27 H 0.39 6.48 6.33 -40.82 -0.26 6.22 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 1.11 6.23 -51.93 -0.32 0.78 16 34 H 0.09 1.86 6.40 -52.48 -0.34 1.53 16 35 H 0.11 2.55 8.06 -52.48 -0.42 2.13 16 LS Contribution 287.83 15.07 4.34 4.34 Total: -1.00 -29.81 287.83 -9.51 -39.33 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -4.61 Total: 9.74 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -4.49 Total: -20.31 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.28 Total: -47.17 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.81 -9.51 -39.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309546902.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.530 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds