Wall clock time and date at job start Mon Mar 30 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86804 * 119.99807 * 2 1 4 4 H 1.48496 * 109.47158 * 240.00032 * 3 2 1 5 5 H 1.48500 * 109.47423 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47046 * 120.00179 * 3 2 1 7 7 C 1.40009 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00009 * 179.97438 * 7 2 1 9 9 C 1.41452 * 119.99864 * 359.97438 * 7 2 1 10 10 C 1.40405 * 119.79777 * 179.97438 * 9 7 2 11 11 C 1.39017 * 118.88350 * 180.02562 * 10 9 7 12 12 N 1.39250 * 120.78600 * 179.97438 * 11 10 9 13 13 C 1.46502 * 119.99743 * 180.02562 * 12 11 10 14 14 H 1.08993 * 110.54201 * 36.15603 * 13 12 11 15 15 C 1.54892 * 110.48274 * 273.54304 * 13 12 11 16 16 C 1.54891 * 102.74959 * 279.26879 * 15 13 12 17 17 C 1.54266 * 104.31343 * 321.99283 * 16 15 13 18 18 H 1.08999 * 117.41538 * 243.70015 * 17 16 15 19 19 C 1.53165 * 118.09930 * 87.61021 * 17 16 15 20 20 C 1.52998 * 60.49458 * 266.60163 * 19 17 16 21 21 H 1.08999 * 119.29368 * 247.80990 * 20 19 17 22 22 C 1.39717 * 118.43037 * 0.25284 * 11 10 9 23 23 C 1.38447 * 119.47131 * 359.49868 * 22 11 10 24 24 N 1.31527 * 121.11092 * 0.51534 * 23 22 11 25 25 H 0.97007 * 120.00124 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.55682 * 0.02562 * 10 9 7 27 27 H 0.96995 * 119.99733 * 0.02562 * 12 11 10 28 28 H 1.09000 * 110.75513 * 160.95739 * 15 13 12 29 29 H 1.09002 * 110.91731 * 37.65535 * 15 13 12 30 30 H 1.09002 * 110.48740 * 80.73781 * 16 15 13 31 31 H 1.08998 * 110.48604 * 203.24665 * 16 15 13 32 32 H 1.09003 * 117.38870 * 158.92736 * 19 17 16 33 33 H 1.08998 * 117.44087 * 14.24753 * 19 17 16 34 34 H 1.08004 * 120.26310 * 179.74541 * 22 11 10 35 35 H 1.08003 * 119.44876 * 180.25384 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6965 1.2126 7 6 2.0075 -1.2125 -0.0005 8 1 3.0875 -1.2125 -0.0010 9 6 1.3003 -2.4375 -0.0005 10 6 2.0066 -3.6510 -0.0016 11 6 1.2924 -4.8436 -0.0022 12 7 1.9526 -6.0697 -0.0038 13 6 1.1827 -7.3161 -0.0049 14 1 0.2804 -7.2078 -0.6066 15 6 0.8221 -7.7317 1.4430 16 6 2.1240 -8.4090 1.9385 17 6 2.6450 -9.1800 0.7081 18 1 2.6941 -10.2665 0.7804 19 6 3.5532 -8.4378 -0.2769 20 6 2.0449 -8.4827 -0.5297 21 1 1.6636 -9.0446 -1.3823 22 6 -0.1034 -4.7831 -0.0070 23 6 -0.7317 -3.5494 -0.0006 24 7 -0.0367 -2.4328 -0.0001 25 1 -0.4851 0.8401 0.0004 26 1 3.0866 -3.6576 -0.0021 27 1 2.9221 -6.0984 -0.0042 28 1 -0.0069 -8.4394 1.4466 29 1 0.5854 -6.8586 2.0510 30 1 2.8488 -7.6581 2.2531 31 1 1.9089 -9.0965 2.7565 32 1 4.1896 -9.0410 -0.9244 33 1 3.9800 -7.4896 0.0500 34 1 -0.6876 -5.6915 -0.0117 35 1 -1.8108 -3.5031 -0.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309546902.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:15 Heat of formation + Delta-G solvation = 44.273811 kcal Electronic energy + Delta-G solvation = -17018.453501 eV Core-core repulsion = 14402.004967 eV Total energy + Delta-G solvation = -2616.448533 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.03133 -39.70023 -36.18195 -34.96131 -32.35844 -31.73342 -30.46573 -28.13111 -27.18271 -23.68783 -23.50246 -22.90358 -20.92636 -20.44418 -19.33531 -17.74709 -17.33899 -16.90742 -16.30539 -15.95127 -15.54417 -14.72496 -14.64084 -14.49832 -14.09105 -13.96494 -13.51920 -13.00224 -12.96291 -12.66445 -12.61839 -12.45319 -12.21012 -11.89689 -11.81003 -11.55116 -11.36077 -11.09224 -10.87967 -10.64593 -9.52014 -9.39593 -8.31343 -8.22188 -6.48715 0.99362 1.41069 1.42137 1.53919 1.61569 2.25421 2.53002 2.85532 2.92480 3.53003 3.75008 3.90823 4.07197 4.22278 4.29218 4.31405 4.50986 4.54908 4.61336 4.67590 4.84223 4.86484 4.89751 5.04053 5.06822 5.13758 5.17986 5.22781 5.27457 5.41019 5.47620 5.74030 5.74259 5.92250 6.31162 6.64976 6.86794 7.00146 7.13298 8.33906 8.52723 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.043724 B = 0.005093 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.226924 B = 5496.005469 C = 5851.145465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.025 3.975 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.476 4.476 8 H 0.082 0.918 9 C 0.251 3.749 10 C -0.371 4.371 11 C 0.265 3.735 12 N -0.732 5.732 13 C 0.172 3.828 14 H 0.074 0.926 15 C -0.135 4.135 16 C -0.094 4.094 17 C -0.147 4.147 18 H 0.134 0.866 19 C -0.154 4.154 20 C -0.180 4.180 21 H 0.129 0.871 22 C -0.364 4.364 23 C 0.130 3.870 24 N -0.546 5.546 25 H 0.277 0.723 26 H 0.096 0.904 27 H 0.394 0.606 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.980 -14.634 0.932 15.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.507 4.507 8 H 0.101 0.899 9 C 0.126 3.874 10 C -0.398 4.398 11 C 0.157 3.843 12 N -0.364 5.364 13 C 0.066 3.934 14 H 0.092 0.908 15 C -0.174 4.174 16 C -0.132 4.132 17 C -0.165 4.165 18 H 0.152 0.848 19 C -0.191 4.191 20 C -0.199 4.199 21 H 0.147 0.853 22 C -0.392 4.392 23 C -0.035 4.035 24 N -0.262 5.262 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.230 0.770 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.138 0.862 33 H 0.098 0.902 34 H 0.137 0.863 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.240 -13.820 0.932 14.225 hybrid contribution 0.918 0.058 -0.036 0.921 sum 4.158 -13.762 0.896 14.405 Atomic orbital electron populations 1.70258 1.08853 1.28909 1.29914 1.26989 0.95729 1.04451 0.92420 0.85216 0.78622 0.75513 0.79982 1.18355 1.19089 1.18380 1.19896 0.94454 0.90645 1.45742 0.89938 1.18763 0.88746 0.92616 0.87226 1.21219 0.98207 0.92436 1.27892 1.17713 0.91779 0.85465 0.89379 1.44578 1.07614 1.01624 1.82619 1.21226 0.94055 0.82260 0.95838 0.90805 1.23106 0.98608 0.99880 0.95847 1.21925 0.95913 0.98381 0.96956 1.23413 1.03406 0.99535 0.90107 0.84803 1.23056 0.92078 1.01756 1.02249 1.23528 0.95204 0.99642 1.01478 0.85285 1.21086 0.92699 0.98381 1.27008 1.22734 0.99521 0.88790 0.92492 1.68706 1.07603 1.28231 1.21618 0.91204 0.88614 0.76997 0.89193 0.93338 0.93070 0.89646 0.86248 0.90211 0.86267 0.84771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -42.85 11.46 21.83 0.25 -42.60 16 2 C 0.03 1.36 5.50 85.28 0.47 1.83 16 3 Si 0.99 39.78 29.56 68.60 2.03 41.81 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 6 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 7 C -0.48 -27.42 9.14 23.49 0.21 -27.21 16 8 H 0.08 4.46 7.85 -2.91 -0.02 4.44 16 9 C 0.25 14.80 6.55 40.18 0.26 15.07 16 10 C -0.37 -19.38 9.72 22.98 0.22 -19.16 16 11 C 0.27 12.06 6.69 38.51 0.26 12.32 16 12 N -0.73 -25.62 5.26 -313.48 -1.65 -27.27 16 13 C 0.17 4.79 2.82 46.07 0.13 4.92 16 14 H 0.07 2.20 6.66 -2.39 -0.02 2.19 16 15 C -0.14 -3.43 6.58 31.89 0.21 -3.22 16 16 C -0.09 -2.01 6.57 31.67 0.21 -1.80 16 17 C -0.15 -2.66 6.97 -9.89 -0.07 -2.73 16 18 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 19 C -0.15 -2.98 9.65 30.65 0.30 -2.69 16 20 C -0.18 -3.83 6.83 -9.95 -0.07 -3.89 16 21 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 22 C -0.36 -16.58 9.30 22.68 0.21 -16.36 16 23 C 0.13 6.62 11.17 84.79 0.95 7.56 16 24 N -0.55 -32.23 7.86 -189.37 -1.49 -33.72 16 25 H 0.28 14.16 8.29 -92.70 -0.77 13.39 16 26 H 0.10 4.75 8.06 -2.91 -0.02 4.73 16 27 H 0.39 12.88 6.33 -92.71 -0.59 12.30 16 28 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 1.76 6.23 -2.39 -0.01 1.75 16 34 H 0.12 4.68 6.40 -2.91 -0.02 4.67 16 35 H 0.13 6.06 8.06 -2.91 -0.02 6.03 16 Total: -1.00 -66.72 287.83 2.94 -63.78 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 0.51 Total: 33.35 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 3.29 Total: -35.36 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -2.89 Total: -103.58 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -66.72 2.94 -63.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309546902.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.051 kcal (2) G-P(sol) polarization free energy of solvation -66.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds