Wall clock time and date at job start Mon Mar 30 2020 06:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00436 * 2 1 4 4 H 1.48504 * 109.46952 * 270.00330 * 3 2 1 5 5 H 1.48496 * 109.46891 * 29.99987 * 3 2 1 6 6 H 1.48494 * 109.47088 * 150.00131 * 3 2 1 7 7 C 1.38816 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99985 * 359.97438 * 7 2 1 9 9 N 1.36945 * 120.00096 * 180.02562 * 7 2 1 10 10 C 1.46491 * 119.99816 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46973 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47268 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47224 * 179.97438 * 12 11 10 14 14 C 1.36831 * 125.06347 * 265.30395 * 13 12 11 15 15 C 1.34242 * 109.92830 * 180.14700 * 14 13 12 16 16 C 1.46491 * 106.99712 * 359.60332 * 15 14 13 17 17 C 1.39630 * 134.02857 * 180.21673 * 16 15 14 18 18 C 1.36627 * 119.76400 * 179.97438 * 17 16 15 19 19 C 1.38830 * 120.52420 * 0.03970 * 18 17 16 20 20 C 1.37746 * 120.67032 * 359.97438 * 19 18 17 21 21 C 1.37685 * 125.06129 * 85.00172 * 13 12 11 22 22 H 0.97001 * 119.99260 * 359.97438 * 1 2 3 23 23 H 0.96994 * 119.99470 * 359.97438 * 9 7 2 24 24 H 1.08997 * 109.47426 * 59.99816 * 10 9 7 25 25 H 1.08998 * 109.47364 * 299.99632 * 10 9 7 26 26 H 1.08997 * 109.47088 * 59.99739 * 11 10 9 27 27 H 1.08998 * 109.46881 * 300.00058 * 11 10 9 28 28 H 1.09008 * 109.46973 * 60.00404 * 12 11 10 29 29 H 1.08998 * 109.47397 * 299.99963 * 12 11 10 30 30 H 1.07993 * 125.03787 * 0.02931 * 14 13 12 31 31 H 1.08002 * 126.50514 * 179.87275 * 15 14 13 32 32 H 1.07993 * 120.11544 * 0.02562 * 17 16 15 33 33 H 1.07994 * 119.73661 * 180.02562 * 18 17 16 34 34 H 1.08005 * 119.66510 * 180.02562 * 19 18 17 35 35 H 1.08006 * 120.11165 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 6 5.6162 -2.1916 0.0000 12 6 6.3812 -3.5166 0.0006 13 7 7.8215 -3.2490 0.0000 14 6 8.6108 -3.1963 -1.1165 15 6 9.8803 -2.9344 -0.7675 16 6 9.9043 -2.7995 0.6910 17 6 10.9072 -2.5299 1.6243 18 6 10.5979 -2.4680 2.9537 19 6 9.2939 -2.6719 3.3844 20 6 8.2892 -2.9395 2.4809 21 6 8.5815 -3.0073 1.1223 22 1 -0.4849 0.8401 0.0004 23 1 3.8646 -0.3623 0.0004 24 1 3.8489 -3.0424 -0.8902 25 1 3.8483 -3.0428 0.8897 26 1 5.8796 -1.6200 0.8899 27 1 5.8796 -1.6200 -0.8900 28 1 6.1179 -4.0886 -0.8892 29 1 6.1178 -4.0878 0.8908 30 1 8.2642 -3.3454 -2.1284 31 1 10.7232 -2.8367 -1.4356 32 1 11.9237 -2.3700 1.2965 33 1 11.3739 -2.2590 3.6751 34 1 9.0648 -2.6194 4.4386 35 1 7.2780 -3.0971 2.8260 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309620948.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:30 Heat of formation + Delta-G solvation = 69.335788 kcal Electronic energy + Delta-G solvation = -16468.878994 eV Core-core repulsion = 13853.517229 eV Total energy + Delta-G solvation = -2615.361765 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.31719 -37.24936 -35.74194 -33.52225 -31.75043 -30.64714 -29.14111 -28.65903 -25.42953 -22.94155 -22.36866 -21.49825 -21.17727 -20.11720 -17.60629 -17.08757 -16.46282 -15.47055 -15.03692 -14.89826 -14.53974 -14.10110 -13.81714 -13.60796 -13.09120 -12.90108 -12.65460 -12.42618 -12.26935 -11.67855 -11.55427 -11.21540 -11.02553 -10.90626 -10.74275 -10.69957 -10.18346 -9.67181 -9.62885 -8.95144 -8.18943 -7.65940 -7.29773 -5.81432 -3.17863 1.12068 1.62723 2.69743 2.82120 3.34972 3.38373 3.42777 3.91406 4.55460 4.63432 4.66590 4.78804 4.92409 4.99871 5.10985 5.28220 5.37509 5.42813 5.48944 5.61588 5.64862 5.75960 5.79608 5.82829 5.91783 6.05094 6.07829 6.45096 6.57968 6.58725 6.60513 6.75378 6.80249 7.23189 7.30678 7.93608 8.37440 9.15779 9.88262 10.07456 11.36805 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.031157 B = 0.004531 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.452098 B = 6177.946310 C = 6434.599519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.756 5.756 10 C 0.161 3.839 11 C -0.147 4.147 12 C 0.112 3.888 13 N -0.479 5.479 14 C 0.057 3.943 15 C -0.214 4.214 16 C -0.112 4.112 17 C -0.075 4.075 18 C -0.151 4.151 19 C -0.104 4.104 20 C -0.124 4.124 21 C 0.099 3.901 22 H 0.260 0.740 23 H 0.361 0.639 24 H 0.029 0.971 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.167 0.833 31 H 0.144 0.856 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.764 -7.468 1.708 23.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.108 0.892 9 N -0.402 5.402 10 C 0.033 3.967 11 C -0.185 4.185 12 C -0.009 4.009 13 N -0.161 5.161 14 C -0.069 4.069 15 C -0.239 4.239 16 C -0.117 4.117 17 C -0.094 4.094 18 C -0.170 4.170 19 C -0.124 4.124 20 C -0.144 4.144 21 C -0.008 4.008 22 H 0.070 0.930 23 H 0.194 0.806 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.184 0.816 31 H 0.162 0.838 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 21.158 -7.632 1.671 22.554 hybrid contribution 0.414 1.291 -0.058 1.357 sum 21.572 -6.342 1.613 22.543 Atomic orbital electron populations 1.69702 1.05104 1.25927 1.57312 1.24674 0.95249 0.97250 1.01812 0.86545 0.79227 0.84900 0.77853 1.20986 1.21563 1.20368 1.19057 0.80507 0.94825 1.43439 0.89151 1.42686 1.04132 1.02137 1.91249 1.20505 0.87637 0.89698 0.98832 1.22188 0.96763 0.96463 1.03128 1.21812 0.76404 0.98376 1.04355 1.44159 1.07786 1.59598 1.04560 1.21858 0.90581 1.03050 0.91389 1.21625 0.96596 1.12752 0.92939 1.19241 0.92684 1.06063 0.93709 1.20226 0.97855 0.99135 0.92189 1.20590 0.96570 1.04313 0.95504 1.20789 0.92553 1.00137 0.98894 1.20115 0.99908 1.04912 0.89508 1.18291 0.90761 1.03138 0.88589 0.92968 0.80597 0.95306 0.95378 0.91371 0.91321 0.88920 0.89437 0.81578 0.83846 0.86397 0.86346 0.85944 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.42 13.97 55.49 0.78 -28.65 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 22.34 27.74 -169.99 -4.71 17.63 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 7 C -0.25 -7.10 10.47 -15.05 -0.16 -7.26 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 N -0.76 -18.16 5.41 -59.91 -0.32 -18.48 16 10 C 0.16 3.00 6.26 -4.04 -0.03 2.97 16 11 C -0.15 -2.19 5.65 -26.73 -0.15 -2.34 16 12 C 0.11 1.33 6.00 -4.04 -0.02 1.31 16 13 N -0.48 -6.11 2.78 -114.43 -0.32 -6.43 16 14 C 0.06 0.65 11.27 -16.73 -0.19 0.46 16 15 C -0.21 -2.50 11.08 -37.67 -0.42 -2.92 16 16 C -0.11 -1.49 6.37 -105.14 -0.67 -2.16 16 17 C -0.08 -0.88 10.05 -39.64 -0.40 -1.28 16 18 C -0.15 -1.64 9.97 -39.94 -0.40 -2.04 16 19 C -0.10 -1.19 10.01 -39.54 -0.40 -1.58 16 20 C -0.12 -1.59 10.00 -39.43 -0.39 -1.99 16 21 C 0.10 1.36 6.81 -83.99 -0.57 0.79 16 22 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 23 H 0.36 8.54 5.53 -40.82 -0.23 8.32 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.09 0.93 8.12 -51.92 -0.42 0.51 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 35 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 299.15 15.07 4.51 4.51 Total: -1.00 -32.99 299.15 -8.85 -41.85 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.89 Total: 5.53 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -3.89 Total: -15.95 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.13 Total: -53.56 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.63 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.99 -8.85 -41.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309620948.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.182 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds