Wall clock time and date at job start Mon Mar 30 2020 06:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00436 * 2 1 4 4 H 1.48504 * 109.46952 * 270.00330 * 3 2 1 5 5 H 1.48496 * 109.46891 * 29.99987 * 3 2 1 6 6 H 1.48494 * 109.47088 * 150.00131 * 3 2 1 7 7 C 1.38816 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99985 * 359.97438 * 7 2 1 9 9 N 1.36945 * 120.00096 * 180.02562 * 7 2 1 10 10 C 1.46491 * 119.99816 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46973 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47268 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47224 * 179.97438 * 12 11 10 14 14 C 1.36831 * 125.06347 * 265.30395 * 13 12 11 15 15 C 1.34242 * 109.92830 * 180.14700 * 14 13 12 16 16 C 1.46491 * 106.99712 * 359.60332 * 15 14 13 17 17 C 1.39630 * 134.02857 * 180.21673 * 16 15 14 18 18 C 1.36627 * 119.76400 * 179.97438 * 17 16 15 19 19 C 1.38830 * 120.52420 * 0.03970 * 18 17 16 20 20 C 1.37746 * 120.67032 * 359.97438 * 19 18 17 21 21 C 1.37685 * 125.06129 * 85.00172 * 13 12 11 22 22 H 0.97001 * 119.99260 * 359.97438 * 1 2 3 23 23 H 0.96994 * 119.99470 * 359.97438 * 9 7 2 24 24 H 1.08997 * 109.47426 * 59.99816 * 10 9 7 25 25 H 1.08998 * 109.47364 * 299.99632 * 10 9 7 26 26 H 1.08997 * 109.47088 * 59.99739 * 11 10 9 27 27 H 1.08998 * 109.46881 * 300.00058 * 11 10 9 28 28 H 1.09008 * 109.46973 * 60.00404 * 12 11 10 29 29 H 1.08998 * 109.47397 * 299.99963 * 12 11 10 30 30 H 1.07993 * 125.03787 * 0.02931 * 14 13 12 31 31 H 1.08002 * 126.50514 * 179.87275 * 15 14 13 32 32 H 1.07993 * 120.11544 * 0.02562 * 17 16 15 33 33 H 1.07994 * 119.73661 * 180.02562 * 18 17 16 34 34 H 1.08005 * 119.66510 * 180.02562 * 19 18 17 35 35 H 1.08006 * 120.11165 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 6 5.6162 -2.1916 0.0000 12 6 6.3812 -3.5166 0.0006 13 7 7.8215 -3.2490 0.0000 14 6 8.6108 -3.1963 -1.1165 15 6 9.8803 -2.9344 -0.7675 16 6 9.9043 -2.7995 0.6910 17 6 10.9072 -2.5299 1.6243 18 6 10.5979 -2.4680 2.9537 19 6 9.2939 -2.6719 3.3844 20 6 8.2892 -2.9395 2.4809 21 6 8.5815 -3.0073 1.1223 22 1 -0.4849 0.8401 0.0004 23 1 3.8646 -0.3623 0.0004 24 1 3.8489 -3.0424 -0.8902 25 1 3.8483 -3.0428 0.8897 26 1 5.8796 -1.6200 0.8899 27 1 5.8796 -1.6200 -0.8900 28 1 6.1179 -4.0886 -0.8892 29 1 6.1178 -4.0878 0.8908 30 1 8.2642 -3.3454 -2.1284 31 1 10.7232 -2.8367 -1.4356 32 1 11.9237 -2.3700 1.2965 33 1 11.3739 -2.2590 3.6751 34 1 9.0648 -2.6194 4.4386 35 1 7.2780 -3.0971 2.8260 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309620948.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:29 Heat of formation + Delta-G solvation = 50.387066 kcal Electronic energy + Delta-G solvation = -16469.700672 eV Core-core repulsion = 13853.517229 eV Total energy + Delta-G solvation = -2616.183443 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.18999 -38.19604 -37.27496 -34.98607 -33.41033 -31.92650 -30.25650 -29.62239 -26.87432 -24.41644 -23.43830 -22.77663 -22.31219 -21.00847 -19.70517 -18.03289 -17.32807 -16.64361 -16.28437 -16.20120 -15.89805 -15.66729 -14.83438 -14.79068 -14.70014 -13.99878 -13.92706 -13.60326 -13.36907 -13.07786 -12.88637 -12.59854 -12.44633 -12.10594 -12.08770 -11.98322 -11.84903 -11.68657 -11.02790 -10.56372 -9.36239 -9.08167 -8.53817 -8.07658 -5.42023 0.24925 0.73571 1.34703 1.37229 1.44691 1.82598 1.93577 2.43858 3.02383 3.23936 3.50035 3.73443 3.79755 3.98965 4.13508 4.19763 4.26664 4.30651 4.36704 4.52479 4.60124 4.66342 4.76563 4.83329 4.98261 5.08846 5.16913 5.19162 5.21201 5.59793 5.70524 5.72766 5.89285 5.95356 6.16447 6.35794 6.44187 7.02409 7.78368 7.96028 9.13713 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.031157 B = 0.004531 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.452098 B = 6177.946310 C = 6434.599519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.061 4.061 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.257 1.257 7 C -0.240 4.240 8 H 0.060 0.940 9 N -0.762 5.762 10 C 0.157 3.843 11 C -0.129 4.129 12 C 0.119 3.881 13 N -0.486 5.486 14 C 0.051 3.949 15 C -0.224 4.224 16 C -0.137 4.137 17 C -0.085 4.085 18 C -0.154 4.154 19 C -0.109 4.109 20 C -0.145 4.145 21 C 0.072 3.928 22 H 0.259 0.741 23 H 0.365 0.635 24 H 0.037 0.963 25 H 0.029 0.971 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.195 0.805 31 H 0.164 0.836 32 H 0.138 0.862 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.239 -7.231 1.533 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.253 4.253 3 Si 0.782 3.218 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.182 1.182 7 C -0.371 4.371 8 H 0.078 0.922 9 N -0.408 5.408 10 C 0.031 3.969 11 C -0.168 4.168 12 C -0.003 4.003 13 N -0.168 5.168 14 C -0.074 4.074 15 C -0.248 4.248 16 C -0.142 4.142 17 C -0.104 4.104 18 C -0.173 4.173 19 C -0.128 4.128 20 C -0.166 4.166 21 C -0.034 4.034 22 H 0.068 0.932 23 H 0.197 0.803 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.134 0.866 29 H 0.111 0.889 30 H 0.212 0.788 31 H 0.182 0.818 32 H 0.156 0.844 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 23.689 -7.428 1.495 24.872 hybrid contribution -0.325 1.110 0.026 1.157 sum 23.365 -6.318 1.522 24.252 Atomic orbital electron populations 1.69876 1.07076 1.26826 1.59394 1.25503 0.96121 1.01232 1.02395 0.85417 0.78465 0.79715 0.78223 1.20178 1.21930 1.18198 1.19068 0.82607 0.93687 1.41767 0.92193 1.42747 1.02670 1.04275 1.91142 1.20684 0.89628 0.87571 0.99028 1.21967 0.94244 0.98108 1.02448 1.21739 0.76023 0.96680 1.05830 1.44227 1.07836 1.60002 1.04776 1.22394 0.90484 1.02335 0.92177 1.21971 0.97570 1.12662 0.92624 1.19675 0.93003 1.06618 0.94901 1.20575 0.98639 0.98726 0.92412 1.20950 0.97029 1.03380 0.95915 1.21132 0.92629 0.99256 0.99800 1.20315 1.00471 1.06012 0.89773 1.18614 0.91525 1.04096 0.89207 0.93173 0.80252 0.94504 0.95246 0.92632 0.91360 0.86620 0.88919 0.78774 0.81847 0.84391 0.83756 0.83956 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.12 13.97 21.65 0.30 -62.81 16 2 C -0.06 -3.60 5.50 84.86 0.47 -3.14 16 3 Si 0.95 45.94 27.74 68.60 1.90 47.84 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.26 -11.36 6.52 99.48 0.65 -10.71 16 7 C -0.24 -13.84 10.47 84.03 0.88 -12.95 16 8 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 9 N -0.76 -35.85 5.41 -343.46 -1.86 -37.71 16 10 C 0.16 5.66 6.26 86.38 0.54 6.20 16 11 C -0.13 -3.62 5.65 30.59 0.17 -3.45 16 12 C 0.12 2.59 6.00 86.38 0.52 3.11 16 13 N -0.49 -11.57 2.78 -515.93 -1.43 -13.00 16 14 C 0.05 1.04 11.27 83.00 0.94 1.98 16 15 C -0.22 -4.79 11.08 23.51 0.26 -4.53 16 16 C -0.14 -3.46 6.37 -20.20 -0.13 -3.59 16 17 C -0.09 -1.83 10.05 22.23 0.22 -1.61 16 18 C -0.15 -3.04 9.97 22.03 0.22 -2.82 16 19 C -0.11 -2.32 10.01 22.30 0.22 -2.10 16 20 C -0.15 -3.63 10.00 22.37 0.22 -3.40 16 21 C 0.07 1.91 6.81 39.03 0.27 2.17 16 22 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 23 H 0.36 16.55 5.53 -92.71 -0.51 16.04 16 24 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.12 1.99 8.12 -2.38 -0.02 1.97 16 29 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.20 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 34 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.12 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -71.22 299.15 4.22 -67.00 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.50 Total: 22.82 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 4.80 Total: -24.13 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -2.99 Total: -113.53 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.90 Total: 47.84 kcal Total: -71.22 4.22 -67.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309620948.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.391 kcal (2) G-P(sol) polarization free energy of solvation -71.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds