Wall clock time and date at job start Mon Mar 30 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38833 * 119.66385 * 2 1 4 4 C 1.36622 * 120.52622 * 180.02562 * 3 2 1 5 5 C 1.39631 * 119.76479 * 359.97438 * 4 3 2 6 6 C 1.46492 * 134.03169 * 180.02562 * 5 4 3 7 7 C 1.50697 * 126.50041 * 359.97438 * 6 5 4 8 8 N 1.46905 * 109.47066 * 79.71187 * 7 6 5 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.46943 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00162 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00023 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99532 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00003 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47381 * 359.97438 * 14 12 10 16 16 H 1.48508 * 109.47001 * 119.99934 * 14 12 10 17 17 H 1.48497 * 109.47392 * 239.99632 * 14 12 10 18 18 C 1.34232 * 106.99537 * 179.73173 * 6 5 4 19 19 N 1.36836 * 109.93445 * 0.22859 * 18 6 5 20 20 H 0.96989 * 125.06606 * 179.97438 * 19 18 6 21 21 C 1.37688 * 109.87100 * 359.97438 * 19 18 6 22 22 C 1.37754 * 119.66636 * 180.35550 * 2 1 3 23 23 H 1.09005 * 109.47241 * 90.00509 * 1 2 3 24 24 H 1.09007 * 109.47003 * 209.99408 * 1 2 3 25 25 H 1.08994 * 109.47195 * 329.99968 * 1 2 3 26 26 H 1.07998 * 119.73435 * 359.97438 * 3 2 1 27 27 H 1.08000 * 120.11767 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.47558 * 319.71351 * 7 6 5 29 29 H 1.08998 * 109.47216 * 199.71013 * 7 6 5 30 30 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 31 31 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 32 32 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 33 33 H 0.97001 * 119.99132 * 180.02562 * 13 12 10 34 34 H 1.08000 * 125.03567 * 180.18663 * 18 6 5 35 35 H 1.07996 * 120.11093 * 359.51604 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.2064 0.0000 4 6 3.5602 1.2269 -0.0005 5 6 4.2715 0.0254 -0.0005 6 6 5.6966 -0.3142 -0.0005 7 6 6.8493 0.6564 -0.0011 8 7 7.0648 1.1616 1.3615 9 6 8.1832 2.1132 1.3994 10 6 8.3740 2.6082 2.8099 11 1 7.7286 2.2518 3.5992 12 6 9.3718 3.5168 3.0927 13 7 10.1573 3.9511 2.1314 14 14 9.6078 4.1309 4.8409 15 1 8.6021 3.4945 5.7292 16 1 10.9734 3.7814 5.3082 17 1 9.4351 5.6054 4.8753 18 6 5.7806 -1.6539 0.0055 19 7 4.5260 -2.2001 0.0042 20 1 4.3320 -3.1503 0.0074 21 6 3.5800 -1.1996 -0.0023 22 6 2.1888 -1.1970 -0.0074 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.6443 2.1359 -0.0004 27 1 4.0880 2.1692 -0.0009 28 1 6.6224 1.4898 -0.6659 29 1 7.7503 0.1502 -0.3475 30 1 7.2133 0.4024 2.0093 31 1 9.0937 1.6174 1.0625 32 1 7.9650 2.9566 0.7443 33 1 10.8595 4.5900 2.3305 34 1 6.7020 -2.2173 0.0099 35 1 1.6452 -2.1301 -0.0053 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309705322.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:02 Heat of formation + Delta-G solvation = 46.263446 kcal Electronic energy + Delta-G solvation = -16433.757041 eV Core-core repulsion = 13817.394785 eV Total energy + Delta-G solvation = -2616.362256 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.04209 -37.23437 -35.29329 -32.75835 -31.98298 -30.49700 -29.35992 -26.97686 -25.94158 -23.90966 -22.56965 -21.31100 -20.74337 -19.09843 -17.63936 -16.32537 -16.01294 -15.02617 -14.66477 -14.42218 -14.17228 -14.05127 -13.56973 -13.43619 -13.16755 -12.95974 -12.29033 -12.11154 -11.90855 -11.58822 -11.15594 -11.07318 -10.99837 -10.76064 -10.62152 -10.45967 -9.92169 -9.31438 -9.09607 -8.43693 -7.93329 -7.42856 -7.14130 -5.98796 -4.00087 1.32901 1.82961 2.89302 3.27679 3.34089 3.41253 3.47129 4.10271 4.48100 4.86583 5.00948 5.05851 5.20355 5.37176 5.38229 5.47816 5.54844 5.57896 5.71354 5.79728 5.86373 6.01902 6.14227 6.21423 6.31240 6.48609 6.74464 6.81757 6.95653 7.06363 7.32372 7.39056 7.48772 7.69483 7.85395 8.19183 8.49682 8.69989 9.10191 9.64711 11.12363 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029961 B = 0.004572 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.314681 B = 6122.641809 C = 6626.890744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.071 4.071 3 C -0.154 4.154 4 C -0.049 4.049 5 C -0.092 4.092 6 C -0.143 4.143 7 C 0.129 3.871 8 N -0.683 5.683 9 C 0.193 3.807 10 C -0.511 4.511 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.898 3.102 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.284 1.284 18 C 0.037 3.963 19 N -0.599 5.599 20 H 0.411 0.589 21 C 0.096 3.904 22 C -0.141 4.141 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.070 0.930 29 H 0.024 0.976 30 H 0.328 0.672 31 H -0.015 1.015 32 H 0.028 0.972 33 H 0.260 0.740 34 H 0.166 0.834 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.093 -11.793 -6.236 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.072 4.072 3 C -0.174 4.174 4 C -0.067 4.067 5 C -0.097 4.097 6 C -0.151 4.151 7 C -0.001 4.001 8 N -0.314 5.314 9 C 0.066 3.934 10 C -0.549 4.549 11 H 0.081 0.919 12 C -0.146 4.146 13 N -0.539 5.539 14 Si 0.726 3.274 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.210 1.210 18 C -0.088 4.088 19 N -0.203 5.203 20 H 0.247 0.753 21 C -0.011 4.011 22 C -0.162 4.162 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.137 0.863 27 H 0.145 0.855 28 H 0.089 0.911 29 H 0.042 0.958 30 H 0.144 0.856 31 H 0.003 0.997 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.183 0.817 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.391 -11.288 -6.325 20.107 hybrid contribution 1.029 -0.702 0.835 1.499 sum -14.362 -11.990 -5.490 19.498 Atomic orbital electron populations 1.20734 0.91455 1.02443 1.01904 1.19482 0.95386 0.92402 0.99907 1.20488 0.94001 0.97094 1.05797 1.20396 0.93332 0.97127 0.95855 1.19054 0.92610 0.92224 1.05804 1.20470 0.93123 0.92751 1.08741 1.20180 0.91800 0.94756 0.93395 1.60661 1.47522 1.19098 1.04082 1.19577 0.85695 0.90574 0.97560 1.21244 1.14841 1.24783 0.94061 0.91937 1.24989 0.95824 0.96435 0.97386 1.69980 1.19755 1.32242 1.31892 0.86443 0.77788 0.78580 0.84610 1.19668 1.21150 1.21010 1.21593 0.87419 0.93859 1.05971 1.41625 1.04662 1.07581 1.66404 0.75307 1.18238 0.90637 0.88229 1.04023 1.19717 0.89829 0.97802 1.08846 0.91534 0.92019 0.91563 0.86339 0.85529 0.91137 0.95791 0.85575 0.99681 0.95382 0.93036 0.81685 0.86889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.99 36.01 0.36 -0.62 16 2 C -0.07 -0.88 5.88 -104.58 -0.61 -1.49 16 3 C -0.15 -2.12 9.62 -39.95 -0.38 -2.51 16 4 C -0.05 -0.78 10.05 -39.65 -0.40 -1.18 16 5 C -0.09 -1.54 6.35 -105.13 -0.67 -2.21 16 6 C -0.14 -2.38 5.83 -102.71 -0.60 -2.98 16 7 C 0.13 2.41 6.21 -4.97 -0.03 2.38 16 8 N -0.68 -15.25 6.48 -116.34 -0.75 -16.01 16 9 C 0.19 5.15 5.44 -4.98 -0.03 5.12 16 10 C -0.51 -14.77 9.32 -34.44 -0.32 -15.09 16 11 H 0.06 1.80 7.81 -52.49 -0.41 1.38 16 12 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 14 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 C 0.04 0.50 11.73 -16.73 -0.20 0.30 16 19 N -0.60 -7.23 6.07 -10.65 -0.06 -7.30 16 20 H 0.41 3.46 8.96 -40.82 -0.37 3.09 16 21 C 0.10 1.38 7.28 -83.99 -0.61 0.77 16 22 C -0.14 -1.79 9.71 -39.43 -0.38 -2.17 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 25 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 26 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 27 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 28 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.33 7.10 8.72 -39.29 -0.34 6.76 16 31 H -0.01 -0.41 8.14 -51.93 -0.42 -0.83 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 34 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 302.46 15.07 4.56 4.56 Total: -1.00 -32.39 302.46 -9.41 -41.81 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.90 Total: 4.58 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -3.97 Total: -18.19 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.08 Total: -49.76 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.39 -9.41 -41.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309705322.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.071 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds