Wall clock time and date at job start Mon Mar 30 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38833 * 119.66385 * 2 1 4 4 C 1.36622 * 120.52622 * 180.02562 * 3 2 1 5 5 C 1.39631 * 119.76479 * 359.97438 * 4 3 2 6 6 C 1.46492 * 134.03169 * 180.02562 * 5 4 3 7 7 C 1.50697 * 126.50041 * 359.97438 * 6 5 4 8 8 N 1.46905 * 109.47066 * 79.71187 * 7 6 5 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.46943 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00162 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00023 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99532 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00003 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47381 * 359.97438 * 14 12 10 16 16 H 1.48508 * 109.47001 * 119.99934 * 14 12 10 17 17 H 1.48497 * 109.47392 * 239.99632 * 14 12 10 18 18 C 1.34232 * 106.99537 * 179.73173 * 6 5 4 19 19 N 1.36836 * 109.93445 * 0.22859 * 18 6 5 20 20 H 0.96989 * 125.06606 * 179.97438 * 19 18 6 21 21 C 1.37688 * 109.87100 * 359.97438 * 19 18 6 22 22 C 1.37754 * 119.66636 * 180.35550 * 2 1 3 23 23 H 1.09005 * 109.47241 * 90.00509 * 1 2 3 24 24 H 1.09007 * 109.47003 * 209.99408 * 1 2 3 25 25 H 1.08994 * 109.47195 * 329.99968 * 1 2 3 26 26 H 1.07998 * 119.73435 * 359.97438 * 3 2 1 27 27 H 1.08000 * 120.11767 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.47558 * 319.71351 * 7 6 5 29 29 H 1.08998 * 109.47216 * 199.71013 * 7 6 5 30 30 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 31 31 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 32 32 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 33 33 H 0.97001 * 119.99132 * 180.02562 * 13 12 10 34 34 H 1.08000 * 125.03567 * 180.18663 * 18 6 5 35 35 H 1.07996 * 120.11093 * 359.51604 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.2064 0.0000 4 6 3.5602 1.2269 -0.0005 5 6 4.2715 0.0254 -0.0005 6 6 5.6966 -0.3142 -0.0005 7 6 6.8493 0.6564 -0.0011 8 7 7.0648 1.1616 1.3615 9 6 8.1832 2.1132 1.3994 10 6 8.3740 2.6082 2.8099 11 1 7.7286 2.2518 3.5992 12 6 9.3718 3.5168 3.0927 13 7 10.1573 3.9511 2.1314 14 14 9.6078 4.1309 4.8409 15 1 8.6021 3.4945 5.7292 16 1 10.9734 3.7814 5.3082 17 1 9.4351 5.6054 4.8753 18 6 5.7806 -1.6539 0.0055 19 7 4.5260 -2.2001 0.0042 20 1 4.3320 -3.1503 0.0074 21 6 3.5800 -1.1996 -0.0023 22 6 2.1888 -1.1970 -0.0074 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.6443 2.1359 -0.0004 27 1 4.0880 2.1692 -0.0009 28 1 6.6224 1.4898 -0.6659 29 1 7.7503 0.1502 -0.3475 30 1 7.2133 0.4024 2.0093 31 1 9.0937 1.6174 1.0625 32 1 7.9650 2.9566 0.7443 33 1 10.8595 4.5900 2.3305 34 1 6.7020 -2.2173 0.0099 35 1 1.6452 -2.1301 -0.0053 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309705322.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:02 Heat of formation + Delta-G solvation = 25.157571 kcal Electronic energy + Delta-G solvation = -16434.672261 eV Core-core repulsion = 13817.394785 eV Total energy + Delta-G solvation = -2617.277476 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.12043 -38.27342 -37.07514 -34.70616 -33.24285 -31.72910 -30.52456 -28.76030 -26.99976 -25.59981 -23.64263 -23.35679 -21.76216 -20.34213 -18.84454 -18.30533 -17.20866 -16.68468 -16.11431 -15.79927 -15.58176 -15.20514 -14.85372 -14.74407 -14.57845 -14.06237 -13.91287 -13.56456 -13.04609 -12.92290 -12.80192 -12.66622 -12.47983 -12.28413 -12.06433 -11.99591 -11.64615 -11.28809 -10.65985 -10.41374 -9.05784 -8.99710 -8.48727 -8.20987 -6.32744 0.25731 0.74450 1.40898 1.42192 1.56152 1.74665 2.29714 2.41358 2.99676 3.11276 3.80552 3.89472 3.95678 4.12639 4.23539 4.38016 4.46749 4.59743 4.69596 4.75680 4.89710 4.94591 4.99456 5.03693 5.10734 5.23560 5.29151 5.34563 5.62654 5.68609 5.74724 5.85869 5.90567 6.04717 6.30934 6.50392 6.74848 6.80976 6.92226 7.38226 8.90151 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029961 B = 0.004572 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.314681 B = 6122.641809 C = 6626.890744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.076 4.076 3 C -0.154 4.154 4 C -0.084 4.084 5 C -0.124 4.124 6 C -0.191 4.191 7 C 0.137 3.863 8 N -0.683 5.683 9 C 0.208 3.792 10 C -0.534 4.534 11 H 0.061 0.939 12 C 0.001 3.999 13 N -0.934 5.934 14 Si 0.974 3.026 15 H -0.265 1.265 16 H -0.275 1.275 17 H -0.278 1.278 18 C 0.067 3.933 19 N -0.582 5.582 20 H 0.432 0.568 21 C 0.084 3.916 22 C -0.137 4.137 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.134 0.866 27 H 0.104 0.896 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.333 0.667 31 H -0.036 1.036 32 H -0.002 1.002 33 H 0.265 0.735 34 H 0.199 0.801 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.743 -13.752 -5.310 22.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.077 4.077 3 C -0.173 4.173 4 C -0.103 4.103 5 C -0.128 4.128 6 C -0.198 4.198 7 C 0.008 3.992 8 N -0.314 5.314 9 C 0.080 3.920 10 C -0.572 4.572 11 H 0.079 0.921 12 C -0.197 4.197 13 N -0.574 5.574 14 Si 0.798 3.202 15 H -0.189 1.189 16 H -0.200 1.200 17 H -0.203 1.203 18 C -0.060 4.060 19 N -0.186 5.186 20 H 0.272 0.728 21 C -0.023 4.023 22 C -0.157 4.157 23 H 0.099 0.901 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.151 0.849 27 H 0.122 0.878 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.150 0.850 31 H -0.018 1.018 32 H 0.016 0.984 33 H 0.074 0.926 34 H 0.215 0.785 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.076 -13.290 -5.410 22.304 hybrid contribution 1.474 -0.141 0.471 1.554 sum -15.602 -13.431 -4.939 21.171 Atomic orbital electron populations 1.20787 0.88630 1.03633 1.03143 1.19919 0.97408 0.91685 0.98698 1.20754 0.93172 0.98746 1.04636 1.20414 0.94610 0.96490 0.98795 1.19314 0.93097 0.93466 1.06949 1.20259 0.92409 0.93776 1.13372 1.20023 0.93377 0.94937 0.90865 1.60536 1.45150 1.19193 1.06525 1.19222 0.86152 0.90443 0.96168 1.21560 1.15323 1.25548 0.94794 0.92065 1.25954 0.95219 0.96318 1.02179 1.70103 1.20271 1.32708 1.34356 0.85271 0.78148 0.77997 0.78781 1.18865 1.20023 1.20340 1.21969 0.88899 0.92937 1.02244 1.41593 1.03706 1.08396 1.64923 0.72815 1.18444 0.91581 0.87849 1.04416 1.20132 0.89205 0.99261 1.07112 0.90130 0.90355 0.90923 0.84853 0.87831 0.92964 0.94955 0.85002 1.01821 0.98431 0.92587 0.78454 0.83639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.99 71.24 0.71 -0.84 16 2 C -0.08 -1.73 5.88 -19.84 -0.12 -1.85 16 3 C -0.15 -4.21 9.62 22.03 0.21 -4.00 16 4 C -0.08 -2.86 10.05 22.23 0.22 -2.64 16 5 C -0.12 -4.19 6.35 -20.20 -0.13 -4.32 16 6 C -0.19 -6.40 5.83 -18.63 -0.11 -6.51 16 7 C 0.14 5.40 6.21 85.55 0.53 5.93 16 8 N -0.68 -31.84 6.48 -521.98 -3.38 -35.22 16 9 C 0.21 11.68 5.44 85.56 0.47 12.15 16 10 C -0.53 -31.68 9.32 25.60 0.24 -31.44 16 11 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 12 C 0.00 0.08 5.46 84.66 0.46 0.54 16 13 N -0.93 -57.65 13.29 21.45 0.28 -57.36 16 14 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 15 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 18 C 0.07 1.68 11.73 83.00 0.97 2.65 16 19 N -0.58 -12.47 6.07 -187.61 -1.14 -13.61 16 20 H 0.43 5.64 8.96 -92.72 -0.83 4.81 16 21 C 0.08 2.30 7.28 39.03 0.28 2.58 16 22 C -0.14 -3.10 9.71 22.37 0.22 -2.88 16 23 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 24 H 0.08 0.92 8.08 -2.38 -0.02 0.90 16 25 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 26 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 27 H 0.10 3.79 8.06 -2.91 -0.02 3.77 16 28 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.33 14.78 8.72 -89.69 -0.78 14.00 16 31 H -0.04 -2.12 8.14 -2.39 -0.02 -2.14 16 32 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 34 H 0.20 3.53 8.06 -2.91 -0.02 3.51 16 35 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -71.99 302.46 1.24 -70.75 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -0.51 Total: 18.65 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 3.97 Total: -30.62 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -4.24 Total: -106.19 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -71.99 1.24 -70.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309705322.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.907 kcal (2) G-P(sol) polarization free energy of solvation -71.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds