Wall clock time and date at job start Mon Mar 30 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47093 * 5.00881 * 3 2 1 5 5 C 1.52997 * 109.47127 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47131 * 180.02562 * 5 4 3 7 7 H 1.09006 * 109.46758 * 304.99395 * 6 5 4 8 8 N 1.46493 * 109.47485 * 64.99753 * 6 5 4 9 9 C 1.36941 * 120.00381 * 205.00241 * 8 6 5 10 10 H 1.07997 * 119.99572 * 359.97438 * 9 8 6 11 11 C 1.38812 * 120.00134 * 180.02562 * 9 8 6 12 12 N 1.31619 * 120.00057 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99955 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47427 * 59.99520 * 13 11 9 15 15 H 1.48497 * 109.47201 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46791 * 299.99537 * 13 11 9 17 17 C 1.50703 * 109.47152 * 184.99915 * 6 5 4 18 18 C 1.38229 * 120.00218 * 279.72457 * 17 6 5 19 19 C 1.38232 * 120.00500 * 179.79087 * 18 17 6 20 20 C 1.38240 * 119.99413 * 0.43458 * 19 18 17 21 21 C 1.38236 * 120.00245 * 359.82145 * 20 19 18 22 22 C 1.38226 * 119.99739 * 359.96804 * 21 20 19 23 23 H 1.09001 * 109.47415 * 245.01112 * 3 2 1 24 24 H 1.09001 * 109.47410 * 125.00888 * 3 2 1 25 25 H 1.09001 * 109.47002 * 299.99701 * 4 3 2 26 26 H 1.08993 * 109.46955 * 60.00139 * 4 3 2 27 27 H 1.09001 * 109.47289 * 299.99953 * 5 4 3 28 28 H 1.09004 * 109.47261 * 59.99697 * 5 4 3 29 29 H 0.97003 * 119.99788 * 24.99545 * 8 6 5 30 30 H 0.96997 * 119.99858 * 180.02562 * 12 11 9 31 31 H 1.08004 * 119.99528 * 359.97438 * 18 17 6 32 32 H 1.08001 * 120.00721 * 180.27597 * 19 18 17 33 33 H 1.08004 * 119.99356 * 179.83351 * 20 19 18 34 34 H 1.07997 * 119.99543 * 179.97438 * 21 20 19 35 35 H 1.07999 * 119.99741 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.4362 -0.1259 5 6 4.6486 -1.4355 -0.1253 6 6 5.1592 -2.8722 -0.2519 7 1 4.7245 -3.4833 0.5392 8 7 4.7724 -3.4149 -1.5565 9 6 4.6441 -4.7678 -1.7246 10 1 4.8285 -5.4348 -0.8955 11 6 4.2782 -5.2820 -2.9610 12 7 4.0539 -4.4691 -3.9716 13 14 4.1025 -7.1275 -3.1901 14 1 3.0627 -7.6446 -2.2644 15 1 3.7051 -7.4168 -4.5914 16 1 5.3996 -7.7884 -2.8965 17 6 6.6611 -2.8843 -0.1281 18 6 7.4470 -2.5515 -1.2155 19 6 8.8245 -2.5584 -1.1007 20 6 9.4163 -2.9068 0.0990 21 6 8.6306 -3.2447 1.1849 22 6 7.2530 -3.2336 1.0713 23 1 2.9711 0.4349 0.9315 24 1 2.9711 0.5904 -0.8417 25 1 2.7556 -2.0259 0.7158 26 1 2.7555 -1.8704 -1.0574 27 1 5.0121 -0.8457 -0.9668 28 1 5.0114 -1.0013 0.8064 29 1 4.6071 -2.8157 -2.3012 30 1 3.7978 -4.8284 -4.8354 31 1 6.9846 -2.2833 -2.1539 32 1 9.4385 -2.2941 -1.9490 33 1 10.4927 -2.9148 0.1878 34 1 9.0930 -3.5173 2.1220 35 1 6.6391 -3.4972 1.9199 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309817236.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:10 Heat of formation + Delta-G solvation = 28.968819 kcal Electronic energy + Delta-G solvation = -16708.411695 eV Core-core repulsion = 14091.299487 eV Total energy + Delta-G solvation = -2617.112208 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.15393 -38.10340 -37.14468 -34.98265 -33.38991 -31.59791 -31.07161 -29.36892 -26.03515 -24.67831 -23.18676 -22.37751 -21.02244 -19.21815 -18.25238 -17.54949 -16.79607 -16.25870 -15.95338 -15.66972 -15.29201 -14.89455 -14.82740 -14.17014 -14.07979 -13.98943 -13.74619 -13.43734 -13.07873 -12.82614 -12.62590 -12.40633 -12.30534 -12.16495 -12.01429 -11.73669 -11.63334 -11.51954 -11.27271 -10.86865 -9.58768 -9.37071 -8.90763 -7.89005 -5.14028 0.70925 0.75128 1.47288 1.47871 1.53484 1.84557 1.89457 2.59052 3.11100 3.21474 3.45114 4.02104 4.09749 4.26893 4.30995 4.34124 4.39417 4.48270 4.60651 4.78260 4.83143 4.87629 4.91284 5.04331 5.15083 5.22539 5.38022 5.39714 5.51836 5.58433 5.64511 5.79661 5.84212 6.08636 6.33616 6.38376 6.68843 7.41672 8.18896 8.41581 9.33497 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.009123 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.986172 B = 3068.575531 C = 5105.585798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C 0.236 3.764 3 C -0.017 4.017 4 C -0.106 4.106 5 C -0.103 4.103 6 C 0.201 3.799 7 H 0.053 0.947 8 N -0.720 5.720 9 C -0.225 4.225 10 H 0.067 0.933 11 C -0.070 4.070 12 N -0.964 5.964 13 Si 0.955 3.045 14 H -0.282 1.282 15 H -0.299 1.299 16 H -0.284 1.284 17 C -0.094 4.094 18 C -0.111 4.111 19 C -0.137 4.137 20 C -0.138 4.138 21 C -0.128 4.128 22 C -0.132 4.132 23 H 0.147 0.853 24 H 0.130 0.870 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.375 0.625 30 H 0.247 0.753 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.868 8.666 11.321 16.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.080 4.080 3 C -0.057 4.057 4 C -0.145 4.145 5 C -0.141 4.141 6 C 0.093 3.907 7 H 0.071 0.929 8 N -0.359 5.359 9 C -0.357 4.357 10 H 0.085 0.915 11 C -0.263 4.263 12 N -0.615 5.615 13 Si 0.786 3.214 14 H -0.208 1.208 15 H -0.225 1.225 16 H -0.210 1.210 17 C -0.097 4.097 18 C -0.129 4.129 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.145 4.145 22 C -0.150 4.150 23 H 0.165 0.835 24 H 0.148 0.852 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.118 0.882 29 H 0.208 0.792 30 H 0.056 0.944 31 H 0.117 0.883 32 H 0.143 0.857 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.126 8.488 11.355 15.866 hybrid contribution 0.018 -1.223 -1.110 1.652 sum 7.144 7.265 10.245 14.449 Atomic orbital electron populations 1.81203 1.15429 1.10986 1.11703 1.30073 0.96144 0.90965 0.90816 1.19629 0.78471 0.99221 1.08335 1.21374 0.96068 0.94760 1.02323 1.21682 0.93914 0.94839 1.03642 1.19529 0.88315 0.94915 0.87962 0.92948 1.42512 1.81270 1.03424 1.08700 1.19444 1.36163 0.85160 0.94929 0.91457 1.25306 1.04038 1.00654 0.96285 1.69761 1.55875 1.34331 1.01575 0.85473 0.77732 0.82064 0.76107 1.20834 1.22542 1.21042 1.21099 0.98291 0.96881 0.93455 1.20948 0.93977 0.99897 0.98121 1.21336 0.94603 1.01027 0.98574 1.21336 1.00616 1.00595 0.93041 1.21374 0.93605 1.00080 0.99480 1.21259 0.95505 1.00877 0.97383 0.83508 0.85226 0.91701 0.93640 0.91368 0.88224 0.79177 0.94393 0.88345 0.85700 0.84299 0.84026 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -16.91 18.54 20.01 0.37 -16.54 16 2 C 0.24 5.97 15.43 89.44 1.38 7.35 16 3 C -0.02 -0.28 5.70 28.79 0.16 -0.11 16 4 C -0.11 -2.56 5.06 30.60 0.15 -2.41 16 5 C -0.10 -2.49 4.73 30.59 0.14 -2.34 16 6 C 0.20 6.90 2.49 44.25 0.11 7.01 16 7 H 0.05 1.84 7.94 -2.38 -0.02 1.83 16 8 N -0.72 -32.75 3.80 -326.51 -1.24 -33.99 16 9 C -0.22 -11.91 9.92 84.03 0.83 -11.08 16 10 H 0.07 3.52 7.83 -2.91 -0.02 3.50 16 11 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 12 N -0.96 -57.41 13.06 21.65 0.28 -57.13 16 13 Si 0.96 46.22 29.55 68.60 2.03 48.25 16 14 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 15 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 16 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 17 C -0.09 -3.13 4.92 -19.87 -0.10 -3.23 16 18 C -0.11 -3.87 9.33 22.27 0.21 -3.66 16 19 C -0.14 -4.08 10.05 22.27 0.22 -3.85 16 20 C -0.14 -3.50 10.05 22.27 0.22 -3.28 16 21 C -0.13 -3.16 10.05 22.27 0.22 -2.93 16 22 C -0.13 -3.71 9.67 22.27 0.22 -3.49 16 23 H 0.15 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.04 1.49 7.75 -2.39 -0.02 1.47 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.38 18.38 7.80 -92.71 -0.72 17.66 16 30 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 31 H 0.10 3.82 7.71 -2.91 -0.02 3.80 16 32 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 33 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.13 3.13 8.04 -2.91 -0.02 3.11 16 Total: -1.00 -68.86 309.42 6.04 -62.81 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.35 Total: 22.11 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 4.25 Total: -25.51 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -0.59 Total: -107.66 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -68.86 6.04 -62.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309817236.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.783 kcal (2) G-P(sol) polarization free energy of solvation -68.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds