Wall clock time and date at job start Mon Mar 30 2020 05:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47375 * 2 1 4 4 C 1.50707 * 109.46633 * 240.00006 * 2 1 3 5 5 H 1.07999 * 119.99614 * 245.41291 * 4 2 1 6 6 C 1.37872 * 120.00096 * 65.41395 * 4 2 1 7 7 N 1.31518 * 119.99979 * 191.35091 * 6 4 2 8 8 Si 1.86805 * 120.00129 * 11.08248 * 6 4 2 9 9 H 1.48499 * 109.47096 * 85.63114 * 8 6 4 10 10 H 1.48497 * 109.46939 * 205.63627 * 8 6 4 11 11 H 1.48507 * 109.46622 * 325.63393 * 8 6 4 12 12 S 1.81399 * 109.47262 * 120.00100 * 2 1 3 13 13 C 1.81392 * 103.00046 * 281.51137 * 12 2 1 14 14 C 1.53000 * 109.47554 * 188.56749 * 13 12 2 15 15 O 1.42900 * 109.47004 * 304.15948 * 14 13 12 16 16 C 1.52999 * 109.47376 * 68.56579 * 13 12 2 17 17 C 1.52997 * 109.47347 * 179.97438 * 16 13 12 18 18 C 1.53001 * 109.47113 * 60.00248 * 17 16 13 19 19 C 1.53002 * 109.47117 * 299.99888 * 18 17 16 20 20 C 1.53001 * 109.47172 * 308.56772 * 13 12 2 21 21 H 1.09000 * 109.46783 * 207.12643 * 1 2 3 22 22 H 1.08999 * 109.46538 * 327.12065 * 1 2 3 23 23 H 1.08996 * 109.47000 * 87.11903 * 1 2 3 24 24 H 0.96999 * 119.99943 * 179.72237 * 7 6 4 25 25 H 1.08999 * 109.46801 * 64.15244 * 14 13 12 26 26 H 1.08996 * 109.47426 * 184.15792 * 14 13 12 27 27 H 0.96701 * 114.00492 * 184.99128 * 15 14 13 28 28 H 1.08997 * 109.47235 * 300.00446 * 16 13 12 29 29 H 1.09008 * 109.47032 * 60.00168 * 16 13 12 30 30 H 1.08997 * 109.47391 * 300.00441 * 17 16 13 31 31 H 1.09004 * 109.47134 * 179.97438 * 17 16 13 32 32 H 1.08995 * 109.47508 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.47473 * 59.99507 * 18 17 16 34 34 H 1.08996 * 109.47082 * 300.00244 * 19 18 17 35 35 H 1.08999 * 109.47320 * 179.97438 * 19 18 17 36 36 H 1.09004 * 109.46878 * 299.99932 * 20 13 12 37 37 H 1.09000 * 109.47473 * 59.99579 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2306 5 1 2.5791 -1.6367 -1.1338 6 6 1.7936 -0.1779 -2.4797 7 7 2.0289 -0.8956 -3.5564 8 14 1.1290 1.5603 -2.6427 9 1 2.2569 2.5259 -2.6177 10 1 0.3938 1.6907 -3.9263 11 1 0.2078 1.8458 -1.5133 12 16 2.1348 -0.8551 1.4811 13 6 1.9382 0.3935 2.7821 14 6 2.6052 -0.0999 4.0676 15 8 2.0589 -1.3694 4.4306 16 6 0.4490 0.6321 3.0393 17 6 0.2833 1.6849 4.1371 18 6 0.9399 2.9932 3.6923 19 6 2.4292 2.7548 3.4350 20 6 2.5948 1.7018 2.3367 21 1 -0.3633 -0.9146 0.4686 22 1 -0.3632 0.8631 0.5579 23 1 -0.3633 0.0516 -1.0263 24 1 1.8572 -0.5224 -4.4351 25 1 3.6784 -0.1993 3.9050 26 1 2.4238 0.6163 4.8690 27 1 2.3801 -1.7083 5.2774 28 1 -0.0261 0.9836 2.1235 29 1 -0.0188 -0.2999 3.3567 30 1 0.7584 1.3329 5.0527 31 1 -0.7777 1.8551 4.3200 32 1 0.8223 3.7431 4.4744 33 1 0.4650 3.3453 2.7765 34 1 2.9042 2.4027 4.3507 35 1 2.8970 3.6867 3.1177 36 1 3.6558 1.5318 2.1534 37 1 2.1197 2.0534 1.4208 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313041407.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:05 Heat of formation + Delta-G solvation = -67.102122 kcal Electronic energy + Delta-G solvation = -16867.377853 eV Core-core repulsion = 14349.250897 eV Total energy + Delta-G solvation = -2518.126956 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.13596 -35.97407 -33.96257 -31.39487 -30.93928 -30.59238 -25.77872 -25.12108 -22.60467 -22.16222 -21.01226 -18.55894 -17.37923 -16.80972 -16.16739 -15.21398 -14.76225 -14.15192 -14.12647 -13.97266 -13.43691 -12.99919 -12.74026 -12.43576 -12.36805 -12.02198 -11.85691 -11.53902 -11.34741 -11.22322 -10.89604 -10.76920 -10.35745 -10.15546 -10.12354 -9.95579 -9.71391 -9.32826 -9.21188 -8.63901 -8.47427 -6.60583 -6.14555 -4.12964 2.62574 3.22697 3.31706 3.33441 3.75466 4.35306 4.36250 4.79993 4.87947 5.04290 5.14884 5.20520 5.31392 5.35933 5.49169 5.59785 5.62016 5.77281 5.79040 5.88615 6.06771 6.10136 6.16809 6.23855 6.27711 6.38529 6.50685 6.55434 6.57263 6.63674 6.93896 7.27002 7.56899 7.80118 8.37795 8.91222 9.44475 10.97672 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.028297 B = 0.008673 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.252362 B = 3227.572866 C = 3714.556506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.064 3.936 3 H 0.039 0.961 4 C -0.506 4.506 5 H 0.082 0.918 6 C 0.082 3.918 7 N -0.890 5.890 8 Si 0.863 3.137 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.253 1.253 12 S -0.240 6.240 13 C -0.030 4.030 14 C 0.101 3.899 15 O -0.556 6.556 16 C -0.114 4.114 17 C -0.118 4.118 18 C -0.121 4.121 19 C -0.118 4.118 20 C -0.115 4.115 21 H 0.056 0.944 22 H 0.029 0.971 23 H 0.057 0.943 24 H 0.266 0.734 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.370 0.630 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.335 7.401 16.357 18.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.065 4.065 3 H 0.057 0.943 4 C -0.545 4.545 5 H 0.100 0.900 6 C -0.122 4.122 7 N -0.527 5.527 8 Si 0.689 3.311 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.177 1.177 12 S -0.007 6.007 13 C -0.140 4.140 14 C 0.023 3.977 15 O -0.359 6.359 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.159 4.159 19 C -0.157 4.157 20 C -0.154 4.154 21 H 0.075 0.925 22 H 0.048 0.952 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.215 0.785 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.228 6.365 15.640 16.930 hybrid contribution -0.441 2.127 0.058 2.172 sum -1.668 8.491 15.697 17.925 Atomic orbital electron populations 1.22682 0.97216 0.99475 1.00934 1.21094 0.94612 0.97216 0.93574 0.94307 1.20481 1.36850 1.09807 0.87315 0.90046 1.24846 0.94740 0.97279 0.95335 1.69910 1.48501 1.36254 0.98052 0.87217 0.79853 0.85777 0.78235 1.20285 1.21179 1.17739 1.86894 1.86066 1.24752 1.02976 1.22574 0.98150 0.96905 0.96414 1.22025 0.96095 0.84988 0.94614 1.86651 1.71083 1.35934 1.42281 1.22075 0.94380 0.99383 0.99429 1.21632 1.00077 0.95283 0.98747 1.21563 0.95851 0.97329 1.01124 1.21619 0.96458 0.98767 0.98834 1.21911 1.01462 0.93194 0.98856 0.92522 0.95189 0.92449 0.92398 0.93437 0.92880 0.78481 0.90650 0.90536 0.92144 0.92243 0.92382 0.92000 0.92043 0.91951 0.90784 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 7.04 37.16 0.26 -2.93 16 2 C 0.06 1.53 2.01 -27.88 -0.06 1.47 16 3 H 0.04 0.92 4.70 -51.93 -0.24 0.68 16 4 C -0.51 -14.44 9.01 -34.44 -0.31 -14.75 16 5 H 0.08 2.59 7.96 -52.49 -0.42 2.17 16 6 C 0.08 2.35 5.21 -17.82 -0.09 2.26 16 7 N -0.89 -27.12 13.96 55.43 0.77 -26.35 16 8 Si 0.86 20.90 25.79 -169.99 -4.38 16.52 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.25 -5.71 5.50 56.52 0.31 -5.40 16 12 S -0.24 -5.23 19.36 -107.50 -2.08 -7.31 16 13 C -0.03 -0.50 0.53 -90.62 -0.05 -0.55 16 14 C 0.10 1.40 5.21 37.16 0.19 1.59 16 15 O -0.56 -7.92 12.61 -35.23 -0.44 -8.36 16 16 C -0.11 -1.77 4.31 -26.73 -0.12 -1.88 16 17 C -0.12 -1.44 5.65 -26.73 -0.15 -1.59 16 18 C -0.12 -1.40 5.92 -26.73 -0.16 -1.55 16 19 C -0.12 -1.40 5.65 -26.70 -0.15 -1.55 16 20 C -0.12 -1.77 4.41 -26.70 -0.12 -1.89 16 21 H 0.06 1.23 7.85 -51.93 -0.41 0.83 16 22 H 0.03 0.59 5.81 -51.93 -0.30 0.28 16 23 H 0.06 1.34 5.43 -51.93 -0.28 1.06 16 24 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.61 4.82 -51.93 -0.25 0.36 16 27 H 0.37 3.31 9.12 45.56 0.42 3.73 16 28 H 0.08 1.28 4.69 -51.93 -0.24 1.03 16 29 H 0.08 1.27 7.80 -51.92 -0.40 0.87 16 30 H 0.06 0.68 6.34 -51.93 -0.33 0.35 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.65 6.52 -51.93 -0.34 0.31 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 1.29 6.02 -51.93 -0.31 0.98 16 LS Contribution 280.60 15.07 4.23 4.23 Total: -1.00 -31.44 280.60 -7.53 -38.97 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.88 Total: 3.67 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -0.74 Total: -21.37 kcal Atomic # 7 Polarization: -27.12 SS G_CDS: 0.77 Total: -26.35 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.44 Total: -8.36 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.38 Total: 16.52 kcal Atomic # 16 Polarization: -5.23 SS G_CDS: -2.08 Total: -7.31 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.44 -7.53 -38.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313041407.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.130 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds