Wall clock time and date at job start Mon Mar 30 2020 05:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47375 * 2 1 4 4 C 1.50707 * 109.46633 * 240.00006 * 2 1 3 5 5 H 1.07999 * 119.99614 * 245.41291 * 4 2 1 6 6 C 1.37872 * 120.00096 * 65.41395 * 4 2 1 7 7 N 1.31518 * 119.99979 * 191.35091 * 6 4 2 8 8 Si 1.86805 * 120.00129 * 11.08248 * 6 4 2 9 9 H 1.48499 * 109.47096 * 85.63114 * 8 6 4 10 10 H 1.48497 * 109.46939 * 205.63627 * 8 6 4 11 11 H 1.48507 * 109.46622 * 325.63393 * 8 6 4 12 12 S 1.81399 * 109.47262 * 120.00100 * 2 1 3 13 13 C 1.81392 * 103.00046 * 281.51137 * 12 2 1 14 14 C 1.53000 * 109.47554 * 188.56749 * 13 12 2 15 15 O 1.42900 * 109.47004 * 304.15948 * 14 13 12 16 16 C 1.52999 * 109.47376 * 68.56579 * 13 12 2 17 17 C 1.52997 * 109.47347 * 179.97438 * 16 13 12 18 18 C 1.53001 * 109.47113 * 60.00248 * 17 16 13 19 19 C 1.53002 * 109.47117 * 299.99888 * 18 17 16 20 20 C 1.53001 * 109.47172 * 308.56772 * 13 12 2 21 21 H 1.09000 * 109.46783 * 207.12643 * 1 2 3 22 22 H 1.08999 * 109.46538 * 327.12065 * 1 2 3 23 23 H 1.08996 * 109.47000 * 87.11903 * 1 2 3 24 24 H 0.96999 * 119.99943 * 179.72237 * 7 6 4 25 25 H 1.08999 * 109.46801 * 64.15244 * 14 13 12 26 26 H 1.08996 * 109.47426 * 184.15792 * 14 13 12 27 27 H 0.96701 * 114.00492 * 184.99128 * 15 14 13 28 28 H 1.08997 * 109.47235 * 300.00446 * 16 13 12 29 29 H 1.09008 * 109.47032 * 60.00168 * 16 13 12 30 30 H 1.08997 * 109.47391 * 300.00441 * 17 16 13 31 31 H 1.09004 * 109.47134 * 179.97438 * 17 16 13 32 32 H 1.08995 * 109.47508 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.47473 * 59.99507 * 18 17 16 34 34 H 1.08996 * 109.47082 * 300.00244 * 19 18 17 35 35 H 1.08999 * 109.47320 * 179.97438 * 19 18 17 36 36 H 1.09004 * 109.46878 * 299.99932 * 20 13 12 37 37 H 1.09000 * 109.47473 * 59.99579 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2306 5 1 2.5791 -1.6367 -1.1338 6 6 1.7936 -0.1779 -2.4797 7 7 2.0289 -0.8956 -3.5564 8 14 1.1290 1.5603 -2.6427 9 1 2.2569 2.5259 -2.6177 10 1 0.3938 1.6907 -3.9263 11 1 0.2078 1.8458 -1.5133 12 16 2.1348 -0.8551 1.4811 13 6 1.9382 0.3935 2.7821 14 6 2.6052 -0.0999 4.0676 15 8 2.0589 -1.3694 4.4306 16 6 0.4490 0.6321 3.0393 17 6 0.2833 1.6849 4.1371 18 6 0.9399 2.9932 3.6923 19 6 2.4292 2.7548 3.4350 20 6 2.5948 1.7018 2.3367 21 1 -0.3633 -0.9146 0.4686 22 1 -0.3632 0.8631 0.5579 23 1 -0.3633 0.0516 -1.0263 24 1 1.8572 -0.5224 -4.4351 25 1 3.6784 -0.1993 3.9050 26 1 2.4238 0.6163 4.8690 27 1 2.3801 -1.7083 5.2774 28 1 -0.0261 0.9836 2.1235 29 1 -0.0188 -0.2999 3.3567 30 1 0.7584 1.3329 5.0527 31 1 -0.7777 1.8551 4.3200 32 1 0.8223 3.7431 4.4744 33 1 0.4650 3.3453 2.7765 34 1 2.9042 2.4027 4.3507 35 1 2.8970 3.6867 3.1177 36 1 3.6558 1.5318 2.1534 37 1 2.1197 2.0534 1.4208 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313041407.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:05 Heat of formation + Delta-G solvation = -89.143134 kcal Electronic energy + Delta-G solvation = -16868.333623 eV Core-core repulsion = 14349.250897 eV Total energy + Delta-G solvation = -2519.082726 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.24783 -37.05681 -35.98219 -33.26746 -32.17887 -31.72504 -27.38432 -26.70818 -23.86475 -23.29503 -22.71201 -19.67449 -18.96479 -18.39764 -17.63492 -16.84820 -15.91178 -15.78920 -15.56582 -15.16273 -14.83375 -14.50927 -14.16836 -14.07000 -13.70472 -13.29565 -13.17128 -13.03028 -12.89936 -12.60333 -12.37744 -12.07677 -12.04314 -11.75232 -11.49009 -11.16126 -11.10924 -10.91876 -10.76939 -10.64945 -10.12702 -8.38194 -8.33750 -6.41797 1.07732 1.31261 1.32412 1.43194 2.07203 2.29229 2.95757 3.32158 3.68564 3.83395 4.08876 4.15650 4.27223 4.29947 4.36880 4.45728 4.51813 4.54711 4.62594 4.70758 4.73123 4.75237 4.91519 5.01309 5.09036 5.15117 5.25578 5.28764 5.33160 5.41564 5.46200 5.50747 5.57593 6.13137 6.59723 7.00330 7.19659 8.79433 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.028297 B = 0.008673 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.252362 B = 3227.572866 C = 3714.556506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.071 3.929 3 H 0.045 0.955 4 C -0.518 4.518 5 H 0.028 0.972 6 C 0.025 3.975 7 N -0.940 5.940 8 Si 0.932 3.068 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.225 1.225 12 S -0.303 6.303 13 C -0.015 4.015 14 C 0.104 3.896 15 O -0.579 6.579 16 C -0.112 4.112 17 C -0.111 4.111 18 C -0.120 4.120 19 C -0.111 4.111 20 C -0.117 4.117 21 H 0.051 0.949 22 H 0.060 0.940 23 H 0.044 0.956 24 H 0.270 0.730 25 H 0.045 0.955 26 H 0.092 0.908 27 H 0.393 0.607 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 10.428 19.221 21.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.057 4.057 3 H 0.063 0.937 4 C -0.557 4.557 5 H 0.047 0.953 6 C -0.174 4.174 7 N -0.579 5.579 8 Si 0.754 3.246 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.148 1.148 12 S -0.070 6.070 13 C -0.125 4.125 14 C 0.025 3.975 15 O -0.387 6.387 16 C -0.151 4.151 17 C -0.150 4.150 18 C -0.158 4.158 19 C -0.150 4.150 20 C -0.156 4.156 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.063 0.937 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.109 0.891 27 H 0.242 0.758 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.115 9.378 18.534 20.879 hybrid contribution -0.093 1.062 -0.748 1.302 sum -2.208 10.440 17.786 20.741 Atomic orbital electron populations 1.22553 0.95684 1.00747 1.00524 1.20862 0.95583 0.96718 0.92579 0.93741 1.20677 1.36532 1.08467 0.89978 0.95335 1.25796 0.94994 1.02051 0.94600 1.70064 1.50330 1.38684 0.98847 0.86110 0.79884 0.79450 0.79189 1.19417 1.20774 1.14757 1.86989 1.86459 1.28529 1.05025 1.22779 0.99647 0.95277 0.94793 1.22048 0.95537 0.85814 0.94060 1.86600 1.71512 1.36317 1.44259 1.21999 0.93052 0.99949 1.00056 1.21615 1.01407 0.94341 0.97679 1.21589 0.95033 0.97490 1.01674 1.21621 0.97337 0.97974 0.98048 1.21902 1.00483 0.93704 0.99506 0.92946 0.92130 0.93733 0.92125 0.93657 0.89077 0.75810 0.92356 0.92068 0.90513 0.90918 0.89510 0.92997 0.89978 0.90554 0.91633 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.96 7.04 71.98 0.51 -5.46 16 2 C 0.07 3.46 2.01 29.85 0.06 3.52 16 3 H 0.04 2.10 4.70 -2.39 -0.01 2.09 16 4 C -0.52 -30.97 9.01 25.60 0.23 -30.73 16 5 H 0.03 1.95 7.96 -2.91 -0.02 1.93 16 6 C 0.03 1.48 5.21 84.65 0.44 1.92 16 7 N -0.94 -59.62 13.96 21.45 0.30 -59.32 16 8 Si 0.93 43.27 25.79 68.60 1.77 45.04 16 9 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.23 -9.33 5.50 99.48 0.55 -8.79 16 12 S -0.30 -13.47 19.36 -56.49 -1.09 -14.56 16 13 C -0.02 -0.47 0.53 -10.79 -0.01 -0.48 16 14 C 0.10 2.58 5.21 71.98 0.38 2.95 16 15 O -0.58 -15.33 12.61 -148.98 -1.88 -17.20 16 16 C -0.11 -3.20 4.31 30.59 0.13 -3.07 16 17 C -0.11 -2.21 5.65 30.59 0.17 -2.04 16 18 C -0.12 -2.19 5.92 30.60 0.18 -2.00 16 19 C -0.11 -2.14 5.65 30.61 0.17 -1.97 16 20 C -0.12 -3.35 4.41 30.61 0.13 -3.21 16 21 H 0.05 2.30 7.85 -2.39 -0.02 2.28 16 22 H 0.06 2.27 5.81 -2.39 -0.01 2.26 16 23 H 0.04 2.04 5.43 -2.39 -0.01 2.03 16 24 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 25 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.09 1.62 4.82 -2.39 -0.01 1.60 16 27 H 0.39 6.03 9.12 -74.06 -0.68 5.35 16 28 H 0.06 1.85 4.69 -2.39 -0.01 1.84 16 29 H 0.06 1.94 7.80 -2.38 -0.02 1.92 16 30 H 0.08 1.30 6.34 -2.39 -0.02 1.29 16 31 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.28 6.52 -2.39 -0.02 1.26 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.05 1.72 6.02 -2.39 -0.01 1.71 16 Total: -1.00 -72.22 280.60 1.73 -70.49 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.23 Total: 16.13 kcal Atomic # 6 Polarization: -42.98 SS G_CDS: 2.40 Total: -40.57 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: 0.30 Total: -59.32 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -1.88 Total: -17.20 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.77 Total: 45.04 kcal Atomic # 16 Polarization: -13.47 SS G_CDS: -1.09 Total: -14.56 kcal Total: -72.22 1.73 -70.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313041407.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.658 kcal (2) G-P(sol) polarization free energy of solvation -72.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds