Wall clock time and date at job start Mon Mar 30 2020 06:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47141 * 278.21338 * 3 2 1 5 5 C 1.53000 * 109.47103 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46693 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.46863 * 179.97438 * 6 5 4 8 8 C 1.39685 * 120.00341 * 180.02562 * 7 6 5 9 9 C 1.39337 * 119.94932 * 359.97438 * 8 7 6 10 10 C 1.38478 * 120.42823 * 180.02562 * 9 8 7 11 11 C 1.37688 * 120.32117 * 359.97438 * 10 9 8 12 12 C 1.40752 * 119.89434 * 0.03305 * 11 10 9 13 13 C 1.41411 * 120.20601 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00317 * 24.35956 * 13 12 11 15 15 C 1.39935 * 119.99624 * 204.36087 * 13 12 11 16 16 N 1.30827 * 120.00201 * 17.84631 * 15 13 12 17 17 Si 1.86796 * 119.99610 * 197.84653 * 15 13 12 18 18 H 1.48501 * 109.47546 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47184 * 119.99998 * 17 15 13 20 20 H 1.48498 * 109.47199 * 240.00043 * 17 15 13 21 21 C 1.38275 * 119.95691 * 179.97438 * 8 7 6 22 22 H 1.09004 * 109.47144 * 158.22071 * 3 2 1 23 23 H 1.08991 * 109.47621 * 38.21506 * 3 2 1 24 24 H 1.09004 * 109.46503 * 60.00341 * 4 3 2 25 25 H 1.09000 * 109.47230 * 300.01118 * 4 3 2 26 26 H 1.08993 * 109.47002 * 60.00336 * 5 4 3 27 27 H 1.08998 * 109.47097 * 299.99744 * 5 4 3 28 28 H 1.09002 * 109.47151 * 60.00453 * 6 5 4 29 29 H 1.09002 * 109.47344 * 299.99718 * 6 5 4 30 30 H 0.97003 * 120.00136 * 359.97438 * 7 6 5 31 31 H 1.07999 * 119.78413 * 0.02562 * 9 8 7 32 32 H 1.07997 * 119.84142 * 179.97438 * 10 9 8 33 33 H 1.07997 * 120.05363 * 179.97438 * 11 10 9 34 34 H 0.97003 * 119.99955 * 179.97438 * 16 15 13 35 35 H 1.08008 * 120.15896 * 359.70358 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.2052 1.4278 5 6 4.6481 -0.2039 1.4278 6 6 5.1581 -0.4104 2.8555 7 7 6.6231 -0.4097 2.8555 8 6 7.3217 -0.5833 4.0527 9 6 6.6240 -0.7564 5.2463 10 6 7.3065 -0.9288 6.4389 11 6 8.6832 -0.9315 6.4578 12 6 9.4016 -0.7575 5.2599 13 6 10.8157 -0.7586 5.2718 14 1 11.3487 -1.2630 6.0641 15 6 11.5243 -0.1061 4.2568 16 7 10.9243 0.7827 3.5074 17 14 13.3270 -0.5042 3.9720 18 1 13.7663 -1.5353 4.9462 19 1 13.5081 -1.0185 2.5907 20 1 14.1400 0.7253 4.1530 21 6 8.7044 -0.5830 4.0515 22 1 2.9709 0.9552 -0.3813 23 1 2.9718 -0.8065 -0.6357 24 1 2.7552 -1.1597 1.8091 25 1 2.7543 0.6020 2.0635 26 1 5.0106 0.7507 1.0467 27 1 5.0122 -1.0109 0.7921 28 1 4.7956 -1.3652 3.2363 29 1 4.7941 0.3964 3.4917 30 1 7.1081 -0.2895 2.0241 31 1 5.5441 -0.7562 5.2414 32 1 6.7562 -1.0618 7.3586 33 1 9.2111 -1.0658 7.3903 34 1 11.4157 1.2353 2.8041 35 1 9.2463 -0.4537 3.1262 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313421119.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:50 Heat of formation + Delta-G solvation = 25.160128 kcal Electronic energy + Delta-G solvation = -16000.756968 eV Core-core repulsion = 13383.479603 eV Total energy + Delta-G solvation = -2617.277365 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -37.99220 -37.30809 -35.86316 -34.08959 -33.08574 -30.04735 -29.41402 -27.10952 -25.20580 -23.72075 -21.73078 -20.59427 -19.84485 -17.70631 -17.18475 -16.14756 -15.72425 -14.97881 -14.70641 -14.52196 -14.44159 -13.81350 -13.31580 -12.97082 -12.80864 -12.69014 -12.26110 -12.02831 -11.84607 -11.62411 -11.50752 -11.16889 -11.05935 -11.00472 -10.78124 -10.52618 -10.37016 -9.60714 -9.42871 -9.22837 -8.74124 -7.29451 -6.71860 -6.15050 -4.29532 2.49832 2.53820 2.86607 3.10776 3.16585 3.24570 3.34893 3.68099 3.98835 4.30337 4.66140 4.66750 4.73999 5.03945 5.17480 5.35026 5.36736 5.65303 5.67772 5.85020 5.87974 6.21138 6.23014 6.29441 6.60348 6.90138 7.12935 7.15555 7.30837 7.39418 7.45967 7.82981 7.97946 8.12465 8.19282 8.50790 8.72783 8.85554 9.02982 9.13746 10.26878 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034005 B = 0.003863 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.220478 B = 7246.375903 C = 7971.406806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.208 3.792 3 C -0.027 4.027 4 C -0.113 4.113 5 C -0.130 4.130 6 C 0.136 3.864 7 N -0.763 5.763 8 C 0.214 3.786 9 C -0.299 4.299 10 C -0.067 4.067 11 C -0.258 4.258 12 C 0.138 3.862 13 C -0.464 4.464 14 H 0.076 0.924 15 C 0.078 3.922 16 N -0.793 5.793 17 Si 0.903 3.097 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.276 1.276 21 C -0.231 4.231 22 H 0.110 0.890 23 H 0.109 0.891 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.389 0.611 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.276 0.724 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.741 -0.682 -7.226 10.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.109 4.109 3 C -0.067 4.067 4 C -0.152 4.152 5 C -0.168 4.168 6 C 0.010 3.990 7 N -0.396 5.396 8 C 0.116 3.884 9 C -0.322 4.322 10 C -0.086 4.086 11 C -0.278 4.278 12 C 0.134 3.866 13 C -0.494 4.494 14 H 0.094 0.906 15 C -0.140 4.140 16 N -0.418 5.418 17 Si 0.728 3.272 18 H -0.185 1.185 19 H -0.198 1.198 20 H -0.202 1.202 21 C -0.255 4.255 22 H 0.128 0.872 23 H 0.128 0.872 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.223 0.777 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.595 -0.520 -7.338 12.091 hybrid contribution 1.415 0.029 -0.462 1.489 sum -8.180 -0.491 -7.800 11.314 Atomic orbital electron populations 1.81236 1.13251 1.09097 1.08618 1.29342 0.95453 0.93006 0.93122 1.19374 0.81232 1.05787 1.00310 1.21464 0.95934 1.03588 0.94242 1.21753 0.94052 1.03004 0.97947 1.21011 0.82504 1.00277 0.95171 1.44394 1.03516 1.84182 1.07555 1.17643 0.91389 0.94582 0.84816 1.19885 0.96637 1.23331 0.92343 1.20290 0.94255 0.98618 0.95404 1.20867 0.93114 1.16835 0.96994 1.17335 0.92926 0.86243 0.90052 1.19583 0.91482 1.30221 1.08131 0.90574 1.25873 1.00528 0.92930 0.94628 1.69877 1.38238 1.17532 1.16191 0.86349 0.82436 0.79310 0.79098 1.18481 1.19849 1.20151 1.20718 0.89908 1.15734 0.99131 0.87225 0.87249 0.90781 0.90760 0.90954 0.91032 0.93385 0.93352 0.77750 0.89670 0.89664 0.89412 0.91289 0.86541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -5.49 18.54 42.15 0.78 -4.71 16 2 C 0.21 1.85 15.43 -20.76 -0.32 1.53 16 3 C -0.03 -0.14 5.70 -29.51 -0.17 -0.30 16 4 C -0.11 -0.77 5.17 -26.73 -0.14 -0.90 16 5 C -0.13 -1.13 5.33 -26.73 -0.14 -1.27 16 6 C 0.14 1.84 4.91 -4.04 -0.02 1.82 16 7 N -0.76 -13.58 5.73 -58.68 -0.34 -13.92 16 8 C 0.21 4.89 6.64 -83.86 -0.56 4.33 16 9 C -0.30 -6.72 9.32 -39.08 -0.36 -7.08 16 10 C -0.07 -1.54 10.02 -39.69 -0.40 -1.94 16 11 C -0.26 -6.50 9.79 -38.83 -0.38 -6.88 16 12 C 0.14 3.72 5.57 -106.85 -0.60 3.12 16 13 C -0.46 -12.45 9.05 -37.74 -0.34 -12.80 16 14 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 15 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 16 N -0.79 -20.37 10.95 55.55 0.61 -19.76 16 17 Si 0.90 18.66 29.59 -169.99 -5.03 13.63 16 18 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 21 C -0.23 -5.94 8.53 -38.68 -0.33 -6.27 16 22 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.67 7.94 -51.93 -0.41 0.25 16 29 H 0.05 0.69 7.94 -51.93 -0.41 0.28 16 30 H 0.39 6.45 8.48 -40.82 -0.35 6.11 16 31 H 0.09 1.71 6.70 -52.49 -0.35 1.36 16 32 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 34 H 0.28 6.43 8.30 -40.82 -0.34 6.10 16 35 H 0.12 3.07 6.16 -52.48 -0.32 2.75 16 LS Contribution 305.14 15.07 4.60 4.60 Total: -1.00 -30.46 305.14 -8.00 -38.46 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -4.78 Total: 6.49 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -3.84 Total: -24.78 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 1.05 Total: -38.39 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.46 -8.00 -38.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313421119.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.618 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds