Wall clock time and date at job start Mon Mar 30 2020 06:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47141 * 278.21338 * 3 2 1 5 5 C 1.53000 * 109.47103 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46693 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.46863 * 179.97438 * 6 5 4 8 8 C 1.39685 * 120.00341 * 180.02562 * 7 6 5 9 9 C 1.39337 * 119.94932 * 359.97438 * 8 7 6 10 10 C 1.38478 * 120.42823 * 180.02562 * 9 8 7 11 11 C 1.37688 * 120.32117 * 359.97438 * 10 9 8 12 12 C 1.40752 * 119.89434 * 0.03305 * 11 10 9 13 13 C 1.41411 * 120.20601 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00317 * 24.35956 * 13 12 11 15 15 C 1.39935 * 119.99624 * 204.36087 * 13 12 11 16 16 N 1.30827 * 120.00201 * 17.84631 * 15 13 12 17 17 Si 1.86796 * 119.99610 * 197.84653 * 15 13 12 18 18 H 1.48501 * 109.47546 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47184 * 119.99998 * 17 15 13 20 20 H 1.48498 * 109.47199 * 240.00043 * 17 15 13 21 21 C 1.38275 * 119.95691 * 179.97438 * 8 7 6 22 22 H 1.09004 * 109.47144 * 158.22071 * 3 2 1 23 23 H 1.08991 * 109.47621 * 38.21506 * 3 2 1 24 24 H 1.09004 * 109.46503 * 60.00341 * 4 3 2 25 25 H 1.09000 * 109.47230 * 300.01118 * 4 3 2 26 26 H 1.08993 * 109.47002 * 60.00336 * 5 4 3 27 27 H 1.08998 * 109.47097 * 299.99744 * 5 4 3 28 28 H 1.09002 * 109.47151 * 60.00453 * 6 5 4 29 29 H 1.09002 * 109.47344 * 299.99718 * 6 5 4 30 30 H 0.97003 * 120.00136 * 359.97438 * 7 6 5 31 31 H 1.07999 * 119.78413 * 0.02562 * 9 8 7 32 32 H 1.07997 * 119.84142 * 179.97438 * 10 9 8 33 33 H 1.07997 * 120.05363 * 179.97438 * 11 10 9 34 34 H 0.97003 * 119.99955 * 179.97438 * 16 15 13 35 35 H 1.08008 * 120.15896 * 359.70358 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.2052 1.4278 5 6 4.6481 -0.2039 1.4278 6 6 5.1581 -0.4104 2.8555 7 7 6.6231 -0.4097 2.8555 8 6 7.3217 -0.5833 4.0527 9 6 6.6240 -0.7564 5.2463 10 6 7.3065 -0.9288 6.4389 11 6 8.6832 -0.9315 6.4578 12 6 9.4016 -0.7575 5.2599 13 6 10.8157 -0.7586 5.2718 14 1 11.3487 -1.2630 6.0641 15 6 11.5243 -0.1061 4.2568 16 7 10.9243 0.7827 3.5074 17 14 13.3270 -0.5042 3.9720 18 1 13.7663 -1.5353 4.9462 19 1 13.5081 -1.0185 2.5907 20 1 14.1400 0.7253 4.1530 21 6 8.7044 -0.5830 4.0515 22 1 2.9709 0.9552 -0.3813 23 1 2.9718 -0.8065 -0.6357 24 1 2.7552 -1.1597 1.8091 25 1 2.7543 0.6020 2.0635 26 1 5.0106 0.7507 1.0467 27 1 5.0122 -1.0109 0.7921 28 1 4.7956 -1.3652 3.2363 29 1 4.7941 0.3964 3.4917 30 1 7.1081 -0.2895 2.0241 31 1 5.5441 -0.7562 5.2414 32 1 6.7562 -1.0618 7.3586 33 1 9.2111 -1.0658 7.3903 34 1 11.4157 1.2353 2.8041 35 1 9.2463 -0.4537 3.1262 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313421119.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:49 Heat of formation + Delta-G solvation = 7.931150 kcal Electronic energy + Delta-G solvation = -16001.504073 eV Core-core repulsion = 13383.479603 eV Total energy + Delta-G solvation = -2618.024470 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.62544 -38.13676 -37.05441 -35.52524 -34.57465 -31.31750 -31.18508 -28.46812 -27.09776 -24.79059 -23.05170 -21.85431 -21.60000 -19.03605 -18.35740 -17.44407 -16.76676 -16.49562 -16.37275 -15.97459 -15.36384 -14.87630 -14.61573 -14.30036 -14.07529 -13.95058 -13.86193 -13.36411 -12.98163 -12.83133 -12.71405 -12.52591 -12.38244 -12.15437 -12.03802 -11.85718 -11.45745 -11.41866 -11.26081 -11.01916 -10.41523 -9.21641 -8.58738 -7.84224 -6.28426 1.11140 1.37034 1.41622 1.55799 1.60647 1.82000 1.88023 2.26256 2.83039 2.89107 3.22208 3.90133 3.99866 4.14736 4.42655 4.55448 4.56693 4.61930 4.78885 4.86093 4.89821 5.02086 5.03131 5.15557 5.24294 5.35376 5.43063 5.45582 5.51090 5.67115 6.01200 6.15075 6.25574 6.30743 6.62406 6.67021 6.98875 7.09274 7.14889 7.32792 8.41794 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034005 B = 0.003863 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.220478 B = 7246.375903 C = 7971.406806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C 0.237 3.763 3 C -0.020 4.020 4 C -0.107 4.107 5 C -0.117 4.117 6 C 0.128 3.872 7 N -0.755 5.755 8 C 0.219 3.781 9 C -0.303 4.303 10 C -0.065 4.065 11 C -0.288 4.288 12 C 0.106 3.894 13 C -0.504 4.504 14 H 0.069 0.931 15 C 0.038 3.962 16 N -0.820 5.820 17 Si 0.979 3.021 18 H -0.262 1.262 19 H -0.262 1.262 20 H -0.267 1.267 21 C -0.259 4.259 22 H 0.135 0.865 23 H 0.137 0.863 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.395 0.605 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.285 0.715 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.008 -0.667 -8.556 11.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.192 5.192 2 C -0.080 4.080 3 C -0.059 4.059 4 C -0.147 4.147 5 C -0.155 4.155 6 C 0.004 3.996 7 N -0.388 5.388 8 C 0.117 3.883 9 C -0.326 4.326 10 C -0.084 4.084 11 C -0.309 4.309 12 C 0.103 3.897 13 C -0.534 4.534 14 H 0.087 0.913 15 C -0.177 4.177 16 N -0.446 5.446 17 Si 0.800 3.200 18 H -0.186 1.186 19 H -0.187 1.187 20 H -0.192 1.192 21 C -0.283 4.283 22 H 0.153 0.847 23 H 0.155 0.845 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.229 0.771 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.903 -0.499 -8.692 13.186 hybrid contribution 1.391 0.041 -0.038 1.393 sum -8.512 -0.458 -8.730 12.201 Atomic orbital electron populations 1.81268 1.15505 1.11624 1.10842 1.30001 0.96001 0.90870 0.91091 1.19586 0.78472 1.08256 0.99616 1.21364 0.94420 1.03492 0.95387 1.21644 0.95048 1.04046 0.94720 1.21294 0.79666 1.00056 0.98599 1.44544 1.05387 1.82668 1.06172 1.17774 0.90840 0.92787 0.86879 1.20235 0.98039 1.22380 0.91932 1.20653 0.93605 0.97013 0.97082 1.21020 0.94387 1.18858 0.96639 1.17741 0.93664 0.87018 0.91258 1.19809 0.92108 1.31967 1.09516 0.91279 1.26684 1.05100 0.92149 0.93771 1.69919 1.40225 1.17898 1.16578 0.85220 0.76465 0.79157 0.79171 1.18601 1.18701 1.19161 1.20663 0.91324 1.18116 0.98215 0.84674 0.84542 0.90949 0.91141 0.90004 0.89725 0.93422 0.93821 0.77109 0.86936 0.86598 0.89442 0.90402 0.87998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.31 18.54 20.01 0.37 -11.94 16 2 C 0.24 3.68 15.43 89.44 1.38 5.06 16 3 C -0.02 -0.12 5.70 28.79 0.16 0.04 16 4 C -0.11 -1.08 5.17 30.60 0.16 -0.93 16 5 C -0.12 -1.61 5.33 30.60 0.16 -1.45 16 6 C 0.13 3.13 4.91 86.38 0.42 3.55 16 7 N -0.76 -25.72 5.73 -339.57 -1.95 -27.66 16 8 C 0.22 9.87 6.64 38.16 0.25 10.12 16 9 C -0.30 -13.19 9.32 22.59 0.21 -12.98 16 10 C -0.06 -2.94 10.02 22.20 0.22 -2.72 16 11 C -0.29 -14.89 9.79 22.75 0.22 -14.67 16 12 C 0.11 5.94 5.57 -21.31 -0.12 5.82 16 13 C -0.50 -28.08 9.05 23.46 0.21 -27.87 16 14 H 0.07 3.77 7.91 -2.91 -0.02 3.74 16 15 C 0.04 1.93 5.14 85.25 0.44 2.37 16 16 N -0.82 -42.85 10.95 21.82 0.24 -42.61 16 17 Si 0.98 38.58 29.59 68.60 2.03 40.61 16 18 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 19 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 20 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 21 C -0.26 -13.63 8.53 22.85 0.19 -13.43 16 22 H 0.14 0.28 8.14 -2.39 -0.02 0.26 16 23 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 24 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 28 H 0.05 1.19 7.94 -2.39 -0.02 1.18 16 29 H 0.04 1.13 7.94 -2.39 -0.02 1.11 16 30 H 0.39 12.51 8.48 -92.71 -0.79 11.73 16 31 H 0.11 4.22 6.70 -2.91 -0.02 4.20 16 32 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 33 H 0.09 4.34 8.06 -2.91 -0.02 4.32 16 34 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 35 H 0.10 5.55 6.16 -2.91 -0.02 5.53 16 Total: -1.00 -68.77 305.14 4.92 -63.85 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.30 Total: 24.83 kcal Atomic # 6 Polarization: -51.00 SS G_CDS: 3.93 Total: -47.07 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -1.34 Total: -82.21 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -68.77 4.92 -63.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313421119.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.779 kcal (2) G-P(sol) polarization free energy of solvation -68.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds