Wall clock time and date at job start Mon Mar 30 2020 06:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47436 * 239.99722 * 3 2 1 5 5 H 1.48501 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47115 * 119.99645 * 3 2 1 7 7 C 1.39931 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99909 * 195.22344 * 7 2 1 9 9 C 1.41402 * 120.00036 * 15.21950 * 7 2 1 10 10 C 1.40782 * 120.20704 * 24.40932 * 9 7 2 11 11 C 1.37645 * 119.88760 * 179.72679 * 10 9 7 12 12 C 1.38521 * 120.32599 * 359.96946 * 11 10 9 13 13 C 1.39265 * 120.42718 * 0.02562 * 12 11 10 14 14 N 1.39860 * 119.95120 * 180.02562 * 13 12 11 15 15 C 1.47091 * 121.18763 * 185.88641 * 14 13 12 16 16 C 1.53174 * 108.79040 * 130.41875 * 15 14 13 17 17 C 1.53087 * 109.49843 * 56.80356 * 16 15 14 18 18 C 1.53297 * 109.28604 * 297.74349 * 17 16 15 19 19 C 1.38184 * 121.18304 * 5.60284 * 14 13 12 20 20 N 1.29333 * 121.26987 * 46.68973 * 19 14 13 21 21 C 1.38304 * 120.10267 * 0.04455 * 13 12 11 22 22 H 0.97005 * 119.99925 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.05469 * 359.69712 * 10 9 7 24 24 H 1.08006 * 119.83604 * 179.97438 * 11 10 9 25 25 H 1.08010 * 119.78605 * 180.02562 * 12 11 10 26 26 H 1.08998 * 109.58959 * 250.21589 * 15 14 13 27 27 H 1.09007 * 109.58400 * 10.63335 * 15 14 13 28 28 H 1.08994 * 109.46598 * 176.81579 * 16 15 14 29 29 H 1.09001 * 109.46325 * 296.80687 * 16 15 14 30 30 H 1.09005 * 109.50153 * 57.68028 * 17 16 15 31 31 H 1.08996 * 109.50602 * 177.79584 * 17 16 15 32 32 H 1.09010 * 109.68189 * 174.42455 * 18 17 16 33 33 H 1.09000 * 109.67713 * 294.92634 * 18 17 16 34 34 H 0.97002 * 119.99752 * 179.97438 * 20 19 14 35 35 H 1.07993 * 120.16591 * 180.02562 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2124 5 1 1.2774 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0595 -1.2281 0.2462 9 6 1.3381 -2.4151 -0.3204 10 6 0.1742 -2.3884 -1.1120 11 6 -0.4694 -3.5642 -1.4251 12 6 0.0227 -4.7748 -0.9656 13 6 1.1730 -4.8166 -0.1817 14 7 1.6615 -6.0445 0.2764 15 6 2.7967 -6.1124 1.2093 16 6 2.4231 -7.0333 2.3749 17 6 2.0303 -8.4100 1.8327 18 6 0.7945 -8.2676 0.9368 19 6 1.0910 -7.2368 -0.1266 20 7 0.8214 -7.4653 -1.3707 21 6 1.8330 -3.6459 0.1448 22 1 -0.4850 0.8401 -0.0004 23 1 -0.2133 -1.4470 -1.4726 24 1 -1.3625 -3.5427 -2.0322 25 1 -0.4890 -5.6921 -1.2169 26 1 3.6700 -6.5117 0.6936 27 1 3.0182 -5.1147 1.5885 28 1 3.2770 -7.1366 3.0443 29 1 1.5828 -6.6049 2.9212 30 1 2.8556 -8.8213 1.2515 31 1 1.8021 -9.0770 2.6641 32 1 0.5680 -9.2257 0.4688 33 1 -0.0564 -7.9410 1.5345 34 1 0.4213 -8.3090 -1.6332 35 1 2.7253 -3.6772 0.7522 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313444159.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:41 Heat of formation + Delta-G solvation = 43.190704 kcal Electronic energy + Delta-G solvation = -17234.259915 eV Core-core repulsion = 14617.764415 eV Total energy + Delta-G solvation = -2616.495501 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.41268 -36.94252 -34.06346 -33.82642 -32.59810 -29.72095 -28.73336 -27.67602 -25.32545 -23.92472 -22.16070 -20.84848 -20.12749 -18.74634 -17.39127 -16.02193 -15.28069 -14.97075 -14.86986 -14.61605 -13.84722 -13.75448 -13.70846 -12.98365 -12.73931 -12.69609 -12.17788 -11.56654 -11.27644 -11.17201 -11.07073 -10.94387 -10.76754 -10.48166 -10.40330 -10.05097 -9.84220 -9.24869 -9.16821 -8.95309 -8.44408 -7.34967 -6.65201 -6.29217 -4.28095 2.53998 2.90569 3.11175 3.14135 3.25902 3.42407 3.54712 3.99920 4.71508 4.78068 4.82710 4.92408 5.07273 5.36409 5.55079 5.66307 5.74758 5.84156 5.87885 5.93598 6.00716 6.10802 6.33537 6.45234 6.70895 6.92720 7.07394 7.13972 7.28391 7.41810 7.77673 7.94687 8.12168 8.22957 8.30572 8.53575 8.71849 8.79906 9.01224 9.11966 10.29282 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.036275 B = 0.005970 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.701786 B = 4688.690503 C = 5224.672628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.463 4.463 8 H 0.075 0.925 9 C 0.132 3.868 10 C -0.187 4.187 11 C -0.084 4.084 12 C -0.261 4.261 13 C 0.207 3.793 14 N -0.564 5.564 15 C 0.123 3.877 16 C -0.139 4.139 17 C -0.112 4.112 18 C -0.135 4.135 19 C 0.422 3.578 20 N -0.722 5.722 21 C -0.273 4.273 22 H 0.279 0.721 23 H 0.120 0.880 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.337 0.663 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.638 -10.761 4.503 11.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.493 4.493 8 H 0.093 0.907 9 C 0.129 3.871 10 C -0.207 4.207 11 C -0.103 4.103 12 C -0.283 4.283 13 C 0.114 3.886 14 N -0.277 5.277 15 C 0.000 4.000 16 C -0.177 4.177 17 C -0.151 4.151 18 C -0.178 4.178 19 C 0.138 3.862 20 N -0.344 5.344 21 C -0.296 4.296 22 H 0.090 0.910 23 H 0.138 0.862 24 H 0.105 0.895 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.114 0.886 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.153 0.847 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.603 -10.067 3.678 11.029 hybrid contribution -0.042 -0.150 0.533 0.555 sum 2.561 -10.217 4.211 11.343 Atomic orbital electron populations 1.69829 1.07480 1.28949 1.36012 1.25874 0.94722 1.01127 0.92360 0.86385 0.80083 0.80430 0.79847 1.18928 1.20437 1.19133 1.19483 0.97011 0.90885 1.41968 0.90722 1.17336 0.90953 0.91225 0.87566 1.21338 0.99527 0.96782 1.03069 1.20498 0.98074 0.92815 0.98943 1.20107 1.00300 0.97088 1.10813 1.17398 0.93358 0.82520 0.95350 1.43889 1.34024 1.01703 1.48090 1.21656 0.87632 1.01420 0.89272 1.21973 1.02316 0.95357 0.98093 1.21520 0.97126 0.97555 0.98880 1.21925 0.99733 0.97922 0.98212 1.21434 0.89338 0.86350 0.89078 1.69163 1.21084 1.27809 1.16307 1.20531 1.04881 0.91463 1.12694 0.91036 0.86220 0.89513 0.88513 0.92556 0.88630 0.90634 0.90951 0.91781 0.91487 0.90608 0.89472 0.84733 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.01 10.79 55.55 0.60 -20.41 16 2 C 0.08 1.94 5.20 -17.35 -0.09 1.85 16 3 Si 0.91 18.97 29.59 -169.99 -5.03 13.94 16 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.46 -12.50 9.07 -37.74 -0.34 -12.84 16 8 H 0.07 1.92 7.89 -52.49 -0.41 1.51 16 9 C 0.13 3.62 5.58 -106.85 -0.60 3.03 16 10 C -0.19 -5.08 8.70 -38.84 -0.34 -5.42 16 11 C -0.08 -2.12 10.01 -39.69 -0.40 -2.52 16 12 C -0.26 -6.38 9.01 -39.10 -0.35 -6.74 16 13 C 0.21 4.89 6.50 -83.79 -0.54 4.34 16 14 N -0.56 -10.83 3.05 -110.07 -0.34 -11.16 16 15 C 0.12 1.89 6.28 -3.63 -0.02 1.87 16 16 C -0.14 -1.62 6.04 -26.60 -0.16 -1.79 16 17 C -0.11 -1.18 5.96 -26.53 -0.16 -1.34 16 18 C -0.13 -1.66 6.16 -27.56 -0.17 -1.83 16 19 C 0.42 7.21 6.18 -153.25 -0.95 6.26 16 20 N -0.72 -13.11 12.05 33.21 0.40 -12.71 16 21 C -0.27 -6.83 9.02 -38.68 -0.35 -7.18 16 22 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 23 H 0.12 3.34 6.03 -52.49 -0.32 3.03 16 24 H 0.09 1.98 8.06 -52.48 -0.42 1.56 16 25 H 0.10 2.28 6.06 -52.48 -0.32 1.96 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.10 1.53 5.71 -51.92 -0.30 1.23 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.77 7.99 -51.92 -0.41 0.36 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.34 5.03 8.68 -40.82 -0.35 4.68 16 35 H 0.09 2.19 6.00 -52.49 -0.32 1.87 16 LS Contribution 284.06 15.07 4.28 4.28 Total: -1.00 -30.00 284.06 -9.08 -39.08 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -4.52 Total: 9.30 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -4.47 Total: -22.30 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.66 Total: -44.29 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.00 -9.08 -39.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313444159.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.266 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds