Wall clock time and date at job start Mon Mar 30 2020 06:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47436 * 239.99722 * 3 2 1 5 5 H 1.48501 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47115 * 119.99645 * 3 2 1 7 7 C 1.39931 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99909 * 195.22344 * 7 2 1 9 9 C 1.41402 * 120.00036 * 15.21950 * 7 2 1 10 10 C 1.40782 * 120.20704 * 24.40932 * 9 7 2 11 11 C 1.37645 * 119.88760 * 179.72679 * 10 9 7 12 12 C 1.38521 * 120.32599 * 359.96946 * 11 10 9 13 13 C 1.39265 * 120.42718 * 0.02562 * 12 11 10 14 14 N 1.39860 * 119.95120 * 180.02562 * 13 12 11 15 15 C 1.47091 * 121.18763 * 185.88641 * 14 13 12 16 16 C 1.53174 * 108.79040 * 130.41875 * 15 14 13 17 17 C 1.53087 * 109.49843 * 56.80356 * 16 15 14 18 18 C 1.53297 * 109.28604 * 297.74349 * 17 16 15 19 19 C 1.38184 * 121.18304 * 5.60284 * 14 13 12 20 20 N 1.29333 * 121.26987 * 46.68973 * 19 14 13 21 21 C 1.38304 * 120.10267 * 0.04455 * 13 12 11 22 22 H 0.97005 * 119.99925 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.05469 * 359.69712 * 10 9 7 24 24 H 1.08006 * 119.83604 * 179.97438 * 11 10 9 25 25 H 1.08010 * 119.78605 * 180.02562 * 12 11 10 26 26 H 1.08998 * 109.58959 * 250.21589 * 15 14 13 27 27 H 1.09007 * 109.58400 * 10.63335 * 15 14 13 28 28 H 1.08994 * 109.46598 * 176.81579 * 16 15 14 29 29 H 1.09001 * 109.46325 * 296.80687 * 16 15 14 30 30 H 1.09005 * 109.50153 * 57.68028 * 17 16 15 31 31 H 1.08996 * 109.50602 * 177.79584 * 17 16 15 32 32 H 1.09010 * 109.68189 * 174.42455 * 18 17 16 33 33 H 1.09000 * 109.67713 * 294.92634 * 18 17 16 34 34 H 0.97002 * 119.99752 * 179.97438 * 20 19 14 35 35 H 1.07993 * 120.16591 * 180.02562 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2124 5 1 1.2774 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0595 -1.2281 0.2462 9 6 1.3381 -2.4151 -0.3204 10 6 0.1742 -2.3884 -1.1120 11 6 -0.4694 -3.5642 -1.4251 12 6 0.0227 -4.7748 -0.9656 13 6 1.1730 -4.8166 -0.1817 14 7 1.6615 -6.0445 0.2764 15 6 2.7967 -6.1124 1.2093 16 6 2.4231 -7.0333 2.3749 17 6 2.0303 -8.4100 1.8327 18 6 0.7945 -8.2676 0.9368 19 6 1.0910 -7.2368 -0.1266 20 7 0.8214 -7.4653 -1.3707 21 6 1.8330 -3.6459 0.1448 22 1 -0.4850 0.8401 -0.0004 23 1 -0.2133 -1.4470 -1.4726 24 1 -1.3625 -3.5427 -2.0322 25 1 -0.4890 -5.6921 -1.2169 26 1 3.6700 -6.5117 0.6936 27 1 3.0182 -5.1147 1.5885 28 1 3.2770 -7.1366 3.0443 29 1 1.5828 -6.6049 2.9212 30 1 2.8556 -8.8213 1.2515 31 1 1.8021 -9.0770 2.6641 32 1 0.5680 -9.2257 0.4688 33 1 -0.0564 -7.9410 1.5345 34 1 0.4213 -8.3090 -1.6332 35 1 2.7253 -3.6772 0.7522 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313444159.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:40 Heat of formation + Delta-G solvation = 26.715633 kcal Electronic energy + Delta-G solvation = -17234.974328 eV Core-core repulsion = 14617.764415 eV Total energy + Delta-G solvation = -2617.209913 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.83645 -38.68512 -35.71542 -35.16423 -34.15359 -31.68646 -30.11054 -29.23829 -27.21017 -25.21666 -23.63676 -22.35142 -21.86208 -20.28607 -19.01465 -17.70957 -16.96856 -16.55444 -16.20998 -16.13151 -15.31892 -15.02676 -14.81083 -14.56404 -14.44296 -14.07029 -13.85209 -13.31002 -12.93848 -12.78808 -12.51616 -12.26031 -12.19677 -11.84302 -11.77295 -11.67730 -11.42188 -11.12528 -10.98023 -10.44846 -10.00694 -9.35667 -8.57539 -8.04229 -6.32509 1.00166 1.05383 1.40332 1.49745 1.52767 1.68961 2.13258 2.24687 2.81931 3.69838 3.83298 3.86710 4.03175 4.04953 4.24474 4.45785 4.60095 4.65446 4.73745 4.84545 4.91644 4.94366 5.04311 5.11247 5.14581 5.17785 5.27563 5.35141 5.39551 5.53010 5.90487 6.04574 6.18890 6.29355 6.46851 6.68766 6.90331 7.00207 7.14024 7.45863 8.38996 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.036275 B = 0.005970 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.701786 B = 4688.690503 C = 5224.672628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.497 4.497 8 H 0.076 0.924 9 C 0.105 3.895 10 C -0.219 4.219 11 C -0.087 4.087 12 C -0.274 4.274 13 C 0.215 3.785 14 N -0.573 5.573 15 C 0.114 3.886 16 C -0.131 4.131 17 C -0.107 4.107 18 C -0.127 4.127 19 C 0.412 3.588 20 N -0.756 5.756 21 C -0.289 4.289 22 H 0.287 0.713 23 H 0.104 0.896 24 H 0.104 0.896 25 H 0.106 0.894 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.353 0.647 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.496 -12.157 5.722 13.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.527 4.527 8 H 0.094 0.906 9 C 0.102 3.898 10 C -0.240 4.240 11 C -0.106 4.106 12 C -0.296 4.296 13 C 0.119 3.881 14 N -0.286 5.286 15 C -0.008 4.008 16 C -0.169 4.169 17 C -0.145 4.145 18 C -0.170 4.170 19 C 0.130 3.870 20 N -0.380 5.380 21 C -0.312 4.312 22 H 0.097 0.903 23 H 0.122 0.878 24 H 0.122 0.878 25 H 0.124 0.876 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.124 0.876 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.107 0.893 34 H 0.170 0.830 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.463 -11.528 4.911 13.001 hybrid contribution -0.319 0.156 0.134 0.380 sum 3.144 -11.373 5.045 12.832 Atomic orbital electron populations 1.69900 1.09052 1.30372 1.35974 1.26785 0.95515 1.04542 0.91186 0.85222 0.78698 0.75520 0.80037 1.18686 1.19245 1.18114 1.19771 0.97339 0.91972 1.43575 0.90553 1.17731 0.91478 0.92567 0.88044 1.21263 1.00807 0.96795 1.05086 1.20726 0.98416 0.92686 0.98754 1.20283 1.00974 0.97023 1.11327 1.17492 0.92537 0.84252 0.93774 1.44157 1.34998 1.01000 1.48414 1.21929 0.86899 1.01892 0.90093 1.21944 1.03194 0.95116 0.96680 1.21542 0.96280 0.97138 0.99542 1.21946 1.00745 0.97218 0.97069 1.22081 0.88288 0.86409 0.90225 1.69042 1.21691 1.29382 1.17840 1.20681 1.05640 0.91499 1.13396 0.90280 0.87848 0.87828 0.87600 0.91551 0.90103 0.87644 0.91880 0.91086 0.88319 0.88010 0.89253 0.82969 0.87585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.74 10.79 21.82 0.24 -44.51 16 2 C 0.03 1.77 5.20 85.25 0.44 2.21 16 3 Si 0.98 39.06 29.59 68.60 2.03 41.08 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 6 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 7 C -0.50 -27.66 9.07 23.46 0.21 -27.45 16 8 H 0.08 4.05 7.89 -2.91 -0.02 4.03 16 9 C 0.10 5.97 5.58 -21.31 -0.12 5.85 16 10 C -0.22 -12.44 8.70 22.75 0.20 -12.24 16 11 C -0.09 -4.51 10.01 22.20 0.22 -4.29 16 12 C -0.27 -13.57 9.01 22.58 0.20 -13.37 16 13 C 0.22 10.29 6.50 38.12 0.25 10.54 16 14 N -0.57 -21.54 3.05 -502.17 -1.53 -23.07 16 15 C 0.11 3.33 6.28 86.32 0.54 3.87 16 16 C -0.13 -2.66 6.04 30.68 0.19 -2.48 16 17 C -0.11 -1.79 5.96 30.72 0.18 -1.60 16 18 C -0.13 -2.71 6.16 30.06 0.19 -2.53 16 19 C 0.41 13.39 6.18 137.54 0.85 14.24 16 20 N -0.76 -26.52 12.05 -48.85 -0.59 -27.11 16 21 C -0.29 -14.88 9.02 22.86 0.21 -14.67 16 22 H 0.29 14.02 8.30 -92.70 -0.77 13.25 16 23 H 0.10 6.09 6.03 -2.91 -0.02 6.07 16 24 H 0.10 4.84 8.06 -2.91 -0.02 4.81 16 25 H 0.11 4.98 6.06 -2.91 -0.02 4.96 16 26 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.08 2.57 5.71 -2.38 -0.01 2.56 16 28 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 1.66 7.99 -2.38 -0.02 1.64 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.35 9.97 8.68 -92.71 -0.80 9.16 16 35 H 0.11 5.04 6.00 -2.91 -0.02 5.03 16 Total: -1.00 -67.07 284.06 4.00 -63.07 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.30 Total: 32.45 kcal Atomic # 6 Polarization: -45.47 SS G_CDS: 3.56 Total: -41.91 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -1.88 Total: -94.69 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.08 kcal Total: -67.07 4.00 -63.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313444159.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.786 kcal (2) G-P(sol) polarization free energy of solvation -67.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds