Wall clock time and date at job start Mon Mar 30 2020 05:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.48213 * 2 1 4 4 C 1.53090 * 109.47930 * 120.02304 * 2 1 3 5 5 C 1.53180 * 109.16235 * 177.58891 * 4 2 1 6 6 H 1.09004 * 109.54414 * 62.97424 * 5 4 2 7 7 C 1.52996 * 109.54856 * 183.15315 * 5 4 2 8 8 S 1.81394 * 109.47641 * 185.00211 * 7 5 4 9 9 C 1.81390 * 103.00311 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47268 * 179.97438 * 9 8 7 11 11 C 1.50709 * 109.47426 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99590 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99966 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00066 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 119.99588 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46935 * 59.99949 * 15 13 11 17 17 H 1.48501 * 109.46797 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47217 * 299.99856 * 15 13 11 19 19 C 1.53185 * 109.03732 * 303.02071 * 5 4 2 20 20 C 1.53091 * 109.16014 * 56.98055 * 19 5 4 21 21 O 1.42904 * 109.47595 * 239.96512 * 2 1 3 22 22 H 1.09001 * 109.47002 * 299.97508 * 1 2 3 23 23 H 1.08993 * 109.46955 * 59.97945 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.52528 * 297.49405 * 4 2 1 26 26 H 1.09002 * 109.52511 * 57.69099 * 4 2 1 27 27 H 1.09000 * 109.46611 * 305.00263 * 7 5 4 28 28 H 1.09000 * 109.47191 * 64.99492 * 7 5 4 29 29 H 1.09005 * 109.47329 * 299.99713 * 9 8 7 30 30 H 1.09004 * 109.47591 * 59.99823 * 9 8 7 31 31 H 1.09000 * 109.47552 * 299.99671 * 10 9 8 32 32 H 1.09006 * 109.47485 * 60.00195 * 10 9 8 33 33 H 0.97001 * 119.99793 * 180.02562 * 14 13 11 34 34 H 1.08995 * 109.51954 * 176.87920 * 19 5 4 35 35 H 1.08993 * 109.52064 * 297.01128 * 19 5 4 36 36 H 1.08991 * 109.48889 * 62.37421 * 20 19 5 37 37 H 1.09003 * 109.47840 * 182.40073 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7221 1.2496 5 6 3.5711 -0.7708 1.2122 6 1 3.9691 0.2435 1.2423 7 6 4.0879 -1.5592 2.4172 8 16 5.9002 -1.4908 2.4528 9 6 6.3166 -2.4644 3.9255 10 6 7.8363 -2.5040 4.0978 11 6 8.1823 -3.3135 5.3211 12 1 7.3968 -3.7550 5.9163 13 6 9.5016 -3.4893 5.6808 14 7 10.4581 -2.9512 4.9562 15 14 9.9304 -4.4921 7.1975 16 1 9.4144 -5.8754 7.0384 17 1 11.4055 -4.5306 7.3646 18 1 9.3123 -3.8677 8.3947 19 6 4.0177 -1.4602 -0.0808 20 6 3.4307 -0.7095 -1.2790 21 8 2.0065 -0.6743 -1.1664 22 1 -0.3633 0.5135 0.8902 23 1 -0.3633 0.5141 -0.8897 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7149 -0.1841 2.1399 26 1 1.6444 -1.7374 1.2711 27 1 3.6898 -1.1240 3.3339 28 1 3.7649 -2.5973 2.3379 29 1 5.8628 -2.0061 4.8043 30 1 5.9379 -3.4799 3.8089 31 1 8.2898 -2.9626 3.2191 32 1 8.2154 -1.4887 4.2144 33 1 11.3863 -3.0752 5.2092 34 1 5.1058 -1.4498 -0.1420 35 1 3.6623 -2.4905 -0.0857 36 1 3.8192 0.3087 -1.2959 37 1 3.7101 -1.2205 -2.2004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362459167.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:14 Heat of formation + Delta-G solvation = -85.024801 kcal Electronic energy + Delta-G solvation = -15308.520751 eV Core-core repulsion = 12789.616609 eV Total energy + Delta-G solvation = -2518.904142 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.66233 -34.95273 -33.68050 -32.93534 -30.86229 -28.93356 -26.98765 -25.25757 -23.48595 -21.90564 -20.96707 -20.12978 -16.51619 -16.48518 -15.98575 -15.78981 -15.00465 -14.68941 -14.51044 -14.28667 -13.74642 -13.18311 -12.88883 -12.68663 -12.53401 -12.39636 -12.05580 -11.69978 -11.52478 -11.27992 -11.07547 -11.00690 -10.77168 -10.58114 -10.36428 -10.18041 -9.69607 -9.58929 -9.38377 -9.05887 -8.42327 -7.11847 -6.06309 -4.11027 2.20642 3.25650 3.29897 3.34638 3.37212 3.62665 4.41210 4.48993 4.58078 4.71815 4.80807 5.01165 5.13089 5.25152 5.29082 5.34712 5.38587 5.40999 5.49314 5.65106 5.69453 5.78096 5.83324 5.88978 5.99173 6.00040 6.12730 6.19203 6.27800 6.73416 7.10885 7.56148 7.65402 7.89970 8.27383 8.93790 9.52825 11.04492 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.064972 B = 0.003606 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.848725 B = 7763.313202 C = 8034.859332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.057 0.943 4 C -0.142 4.142 5 C -0.070 4.070 6 H 0.079 0.921 7 C -0.083 4.083 8 S -0.288 6.288 9 C -0.059 4.059 10 C 0.038 3.962 11 C -0.523 4.523 12 H 0.056 0.944 13 C 0.060 3.940 14 N -0.891 5.891 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.152 4.152 20 C 0.062 3.938 21 O -0.383 6.383 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.263 0.737 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.492 5.495 -9.514 20.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.075 0.925 4 C -0.181 4.181 5 C -0.090 4.090 6 H 0.097 0.903 7 C -0.232 4.232 8 S -0.060 6.060 9 C -0.207 4.207 10 C 0.000 4.000 11 C -0.563 4.563 12 H 0.075 0.925 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.724 3.276 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.190 4.190 20 C -0.014 4.014 21 O -0.303 6.303 22 H 0.089 0.911 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.740 5.944 -10.369 20.569 hybrid contribution -0.226 -1.099 1.995 2.289 sum -16.967 4.846 -8.374 19.531 Atomic orbital electron populations 1.21766 0.93220 1.02900 1.02292 1.22063 0.94859 0.95004 0.85178 0.92510 1.22307 0.95269 1.02099 0.98434 1.20946 0.94590 0.99791 0.93655 0.90308 1.23347 0.96033 1.02983 1.00808 1.86822 1.04533 1.72895 1.41764 1.23669 1.04882 0.98810 0.93293 1.18893 0.85418 0.98170 0.97555 1.21071 0.92093 1.32881 1.10224 0.92548 1.25011 0.96383 0.95817 0.97023 1.69960 0.99915 1.44255 1.38812 0.86581 0.77291 0.80607 0.83080 1.20147 1.21141 1.20150 1.22304 1.02504 1.00189 0.93962 1.22591 0.80564 0.99664 0.98593 1.87905 1.21408 1.78027 1.42948 0.91142 0.91945 0.91830 0.90835 0.90888 0.90641 0.90657 0.91539 0.91509 0.95562 0.95583 0.92712 0.89369 0.91010 0.93246 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.56 37.16 0.36 -0.78 16 2 C 0.09 0.84 3.26 -26.68 -0.09 0.76 16 3 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.14 -1.40 4.71 -26.59 -0.13 -1.53 16 5 C -0.07 -0.83 2.27 -90.43 -0.21 -1.03 16 6 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 7 C -0.08 -1.15 5.39 37.16 0.20 -0.95 16 8 S -0.29 -5.29 20.64 -107.50 -2.22 -7.51 16 9 C -0.06 -1.25 5.88 37.16 0.22 -1.03 16 10 C 0.04 1.00 4.98 -27.88 -0.14 0.87 16 11 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 15 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 C -0.15 -1.78 5.20 -26.59 -0.14 -1.92 16 20 C 0.06 0.66 6.84 37.20 0.25 0.91 16 21 O -0.38 -4.45 10.41 -35.23 -0.37 -4.81 16 22 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 28 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 29 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 30 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.09 1.14 7.28 -51.93 -0.38 0.76 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 311.46 15.07 4.69 4.69 Total: -1.00 -30.02 311.46 -8.94 -38.95 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -6.68 Total: -3.55 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -0.08 Total: -18.18 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.74 Total: -26.06 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.37 Total: -4.81 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -5.29 SS G_CDS: -2.22 Total: -7.51 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.02 -8.94 -38.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362459167.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.072 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds