Wall clock time and date at job start Mon Mar 30 2020 05:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.48213 * 2 1 4 4 C 1.53090 * 109.47930 * 120.02304 * 2 1 3 5 5 C 1.53180 * 109.16235 * 177.58891 * 4 2 1 6 6 H 1.09004 * 109.54414 * 62.97424 * 5 4 2 7 7 C 1.52996 * 109.54856 * 183.15315 * 5 4 2 8 8 S 1.81394 * 109.47641 * 185.00211 * 7 5 4 9 9 C 1.81390 * 103.00311 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47268 * 179.97438 * 9 8 7 11 11 C 1.50709 * 109.47426 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99590 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99966 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00066 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 119.99588 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46935 * 59.99949 * 15 13 11 17 17 H 1.48501 * 109.46797 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47217 * 299.99856 * 15 13 11 19 19 C 1.53185 * 109.03732 * 303.02071 * 5 4 2 20 20 C 1.53091 * 109.16014 * 56.98055 * 19 5 4 21 21 O 1.42904 * 109.47595 * 239.96512 * 2 1 3 22 22 H 1.09001 * 109.47002 * 299.97508 * 1 2 3 23 23 H 1.08993 * 109.46955 * 59.97945 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.52528 * 297.49405 * 4 2 1 26 26 H 1.09002 * 109.52511 * 57.69099 * 4 2 1 27 27 H 1.09000 * 109.46611 * 305.00263 * 7 5 4 28 28 H 1.09000 * 109.47191 * 64.99492 * 7 5 4 29 29 H 1.09005 * 109.47329 * 299.99713 * 9 8 7 30 30 H 1.09004 * 109.47591 * 59.99823 * 9 8 7 31 31 H 1.09000 * 109.47552 * 299.99671 * 10 9 8 32 32 H 1.09006 * 109.47485 * 60.00195 * 10 9 8 33 33 H 0.97001 * 119.99793 * 180.02562 * 14 13 11 34 34 H 1.08995 * 109.51954 * 176.87920 * 19 5 4 35 35 H 1.08993 * 109.52064 * 297.01128 * 19 5 4 36 36 H 1.08991 * 109.48889 * 62.37421 * 20 19 5 37 37 H 1.09003 * 109.47840 * 182.40073 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7221 1.2496 5 6 3.5711 -0.7708 1.2122 6 1 3.9691 0.2435 1.2423 7 6 4.0879 -1.5592 2.4172 8 16 5.9002 -1.4908 2.4528 9 6 6.3166 -2.4644 3.9255 10 6 7.8363 -2.5040 4.0978 11 6 8.1823 -3.3135 5.3211 12 1 7.3968 -3.7550 5.9163 13 6 9.5016 -3.4893 5.6808 14 7 10.4581 -2.9512 4.9562 15 14 9.9304 -4.4921 7.1975 16 1 9.4144 -5.8754 7.0384 17 1 11.4055 -4.5306 7.3646 18 1 9.3123 -3.8677 8.3947 19 6 4.0177 -1.4602 -0.0808 20 6 3.4307 -0.7095 -1.2790 21 8 2.0065 -0.6743 -1.1664 22 1 -0.3633 0.5135 0.8902 23 1 -0.3633 0.5141 -0.8897 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7149 -0.1841 2.1399 26 1 1.6444 -1.7374 1.2711 27 1 3.6898 -1.1240 3.3339 28 1 3.7649 -2.5973 2.3379 29 1 5.8628 -2.0061 4.8043 30 1 5.9379 -3.4799 3.8089 31 1 8.2898 -2.9626 3.2191 32 1 8.2154 -1.4887 4.2144 33 1 11.3863 -3.0752 5.2092 34 1 5.1058 -1.4498 -0.1420 35 1 3.6623 -2.4905 -0.0857 36 1 3.8192 0.3087 -1.2959 37 1 3.7101 -1.2205 -2.2004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362459167.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:14 Heat of formation + Delta-G solvation = -101.414662 kcal Electronic energy + Delta-G solvation = -15309.231469 eV Core-core repulsion = 12789.616609 eV Total energy + Delta-G solvation = -2519.614860 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.50414 -35.91601 -35.76685 -33.67957 -32.91942 -29.89356 -27.85244 -27.26781 -24.43982 -23.27591 -22.33094 -21.08315 -18.68513 -17.33167 -17.05637 -16.85583 -16.53015 -16.07600 -15.71894 -15.37697 -15.34601 -14.58339 -14.24235 -13.74823 -13.49217 -13.45043 -13.24055 -13.08341 -12.89933 -12.75157 -12.42214 -12.19091 -12.05368 -12.02758 -11.71975 -11.66803 -11.28664 -11.09757 -10.74968 -10.61611 -10.41675 -8.61248 -8.24453 -6.38491 0.78682 1.40118 1.43447 1.51704 1.78563 2.39467 2.86674 3.08596 3.57748 3.66816 3.86251 4.00202 4.23418 4.24296 4.29707 4.31442 4.36721 4.47669 4.58875 4.61627 4.72598 4.80214 4.85482 4.86376 4.90267 5.07000 5.09939 5.19938 5.32680 5.35963 5.37311 5.48010 5.72027 6.09578 6.31961 6.75662 7.31161 8.87191 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.064972 B = 0.003606 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.848725 B = 7763.313202 C = 8034.859332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.081 3.919 3 H 0.062 0.938 4 C -0.134 4.134 5 C -0.068 4.068 6 H 0.075 0.925 7 C -0.067 4.067 8 S -0.314 6.314 9 C -0.051 4.051 10 C 0.045 3.955 11 C -0.546 4.546 12 H 0.067 0.933 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.972 3.028 16 H -0.265 1.265 17 H -0.282 1.282 18 H -0.264 1.264 19 C -0.150 4.150 20 C 0.064 3.936 21 O -0.398 6.398 22 H 0.088 0.912 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.073 0.927 31 H -0.005 1.005 32 H -0.004 1.004 33 H 0.266 0.734 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.385 5.314 -8.794 21.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.023 3.977 3 H 0.080 0.920 4 C -0.174 4.174 5 C -0.087 4.087 6 H 0.094 0.906 7 C -0.215 4.215 8 S -0.086 6.086 9 C -0.198 4.198 10 C 0.007 3.993 11 C -0.585 4.585 12 H 0.085 0.915 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.796 3.204 16 H -0.190 1.190 17 H -0.208 1.208 18 H -0.189 1.189 19 C -0.188 4.188 20 C -0.012 4.012 21 O -0.318 6.318 22 H 0.107 0.893 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.014 0.986 32 H 0.014 0.986 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.645 5.763 -9.648 21.770 hybrid contribution 0.308 -0.988 1.688 1.980 sum -18.337 4.775 -7.959 20.552 Atomic orbital electron populations 1.21776 0.91740 1.03039 1.03329 1.22250 0.96053 0.95001 0.84376 0.92013 1.22268 0.93223 1.02477 0.99399 1.20950 0.96104 0.99113 0.92552 0.90622 1.23450 0.91508 1.04049 1.02486 1.86891 1.09614 1.72168 1.39907 1.23309 1.01246 1.00003 0.95292 1.18664 0.88922 0.95766 0.95940 1.21538 0.92804 1.33174 1.10991 0.91524 1.26038 0.96253 0.96914 1.00507 1.70106 1.00400 1.45725 1.40883 0.85394 0.77090 0.79114 0.78812 1.18955 1.20769 1.18900 1.22257 1.01471 1.00255 0.94803 1.22607 0.80322 0.99920 0.98391 1.87899 1.21644 1.78376 1.43883 0.89324 0.91750 0.92121 0.89162 0.90920 0.89305 0.89954 0.90744 0.90858 0.98614 0.98590 0.92517 0.91019 0.91410 0.92677 0.87821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.56 71.98 0.69 -1.18 16 2 C 0.08 1.38 3.26 30.63 0.10 1.48 16 3 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.13 -2.31 4.71 30.68 0.14 -2.16 16 5 C -0.07 -1.47 2.27 -10.67 -0.02 -1.50 16 6 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 7 C -0.07 -1.73 5.39 71.98 0.39 -1.34 16 8 S -0.31 -11.50 20.64 -56.49 -1.17 -12.67 16 9 C -0.05 -2.15 5.88 71.98 0.42 -1.73 16 10 C 0.05 2.47 4.98 29.85 0.15 2.62 16 11 C -0.55 -31.16 9.11 25.60 0.23 -30.93 16 12 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 13 C 0.00 0.08 5.46 84.65 0.46 0.54 16 14 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 15 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 16 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 19 C -0.15 -3.38 5.20 30.69 0.16 -3.22 16 20 C 0.06 1.27 6.84 72.01 0.49 1.76 16 21 O -0.40 -8.54 10.41 -148.98 -1.55 -10.09 16 22 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 33 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 34 H 0.07 1.85 7.28 -2.39 -0.02 1.83 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -65.02 311.46 3.81 -61.21 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.00 Total: 8.24 kcal Atomic # 6 Polarization: -38.87 SS G_CDS: 3.22 Total: -35.66 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.28 Total: -56.98 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -1.55 Total: -10.09 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -11.50 SS G_CDS: -1.17 Total: -12.67 kcal Total: -65.02 3.81 -61.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362459167.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.201 kcal (2) G-P(sol) polarization free energy of solvation -65.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds