Wall clock time and date at job start Mon Mar 30 2020 05:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47657 * 2 1 4 4 C 1.53091 * 109.47678 * 120.03513 * 2 1 3 5 5 C 1.53177 * 109.16193 * 62.37830 * 4 2 1 6 6 H 1.09004 * 109.61731 * 297.06490 * 5 4 2 7 7 C 1.53005 * 109.54462 * 176.84620 * 5 4 2 8 8 S 1.81399 * 109.47445 * 175.44159 * 7 5 4 9 9 C 1.81394 * 102.99894 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.46950 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.47313 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99865 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00185 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99973 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99965 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47052 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47032 * 119.99460 * 15 13 11 18 18 H 1.48490 * 109.46937 * 239.99631 * 15 13 11 19 19 C 1.53176 * 109.03953 * 56.97661 * 5 4 2 20 20 C 1.53089 * 109.16231 * 303.01970 * 19 5 4 21 21 O 1.42900 * 109.47796 * 239.98002 * 2 1 3 22 22 H 1.09002 * 109.47424 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47244 * 300.02198 * 1 2 3 24 24 H 1.09002 * 109.46864 * 60.02247 * 1 2 3 25 25 H 1.09000 * 109.52652 * 302.46821 * 4 2 1 26 26 H 1.08998 * 109.51925 * 182.27624 * 4 2 1 27 27 H 1.09001 * 109.46962 * 55.43975 * 7 5 4 28 28 H 1.09004 * 109.46832 * 295.44139 * 7 5 4 29 29 H 1.09002 * 109.47501 * 299.99574 * 9 8 7 30 30 H 1.08998 * 109.47135 * 60.00434 * 9 8 7 31 31 H 1.08998 * 109.47409 * 299.99897 * 10 9 8 32 32 H 1.09002 * 109.47273 * 60.00233 * 10 9 8 33 33 H 0.96993 * 120.00062 * 180.02562 * 14 13 11 34 34 H 1.08993 * 109.52155 * 62.92501 * 19 5 4 35 35 H 1.09001 * 109.52126 * 183.05308 * 19 5 4 36 36 H 1.09005 * 109.48102 * 177.59244 * 20 19 5 37 37 H 1.09004 * 109.47977 * 297.61468 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7224 1.2495 5 6 1.5757 -2.1815 1.2118 6 1 0.4867 -2.2195 1.2412 7 6 2.1466 -2.9318 2.4168 8 16 1.4876 -4.6217 2.4447 9 6 2.2666 -5.3392 3.9174 10 6 1.8042 -6.7881 4.0841 11 6 2.4509 -7.3841 5.3080 12 1 3.1246 -6.7890 5.9067 13 6 2.1832 -8.6893 5.6628 14 7 1.3632 -9.4140 4.9334 15 14 2.9854 -9.4282 7.1793 16 1 3.8594 -8.4135 7.8212 17 1 1.9339 -9.8538 8.1378 18 1 3.8009 -10.6046 6.7844 19 6 2.0764 -2.8322 -0.0813 20 6 1.5645 -2.0283 -1.2793 21 8 2.0065 -0.6740 -1.1665 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5141 0.8897 24 1 -0.3633 0.5135 -0.8902 25 1 1.6420 -0.2360 2.1399 26 1 3.1297 -0.6876 1.2709 27 1 1.8626 -2.4159 3.3340 28 1 3.2335 -2.9669 2.3413 29 1 3.3504 -5.3141 3.8039 30 1 1.9799 -4.7632 4.7972 31 1 0.7205 -6.8128 4.1978 32 1 2.0906 -7.3644 3.2044 33 1 1.1746 -10.3320 5.1832 34 1 3.1663 -2.8400 -0.0868 35 1 1.7045 -3.8550 -0.1421 36 1 1.9531 -2.4619 -2.2008 37 1 0.4750 -2.0550 -1.2962 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362459168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:16 Heat of formation + Delta-G solvation = -81.606423 kcal Electronic energy + Delta-G solvation = -15462.910661 eV Core-core repulsion = 12944.154751 eV Total energy + Delta-G solvation = -2518.755910 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.94161 -34.93917 -33.68157 -32.38076 -30.86291 -29.21930 -27.05097 -25.25552 -23.57406 -22.40535 -20.92466 -19.36064 -16.57764 -16.48283 -16.21167 -15.72692 -15.02021 -14.63740 -14.50633 -14.13202 -13.80931 -13.31188 -13.23785 -12.70158 -12.44556 -12.25747 -11.90204 -11.71976 -11.52677 -11.37650 -11.09221 -11.03114 -10.73956 -10.54070 -10.20197 -10.15645 -9.69332 -9.57051 -9.38443 -9.04227 -8.43047 -7.11639 -6.06733 -4.11205 2.21076 3.25912 3.27598 3.35376 3.39131 3.72135 4.41213 4.56522 4.58476 4.62207 4.82603 4.96801 5.16528 5.23665 5.28899 5.30615 5.32151 5.44354 5.49426 5.67601 5.73094 5.80660 5.81384 5.95188 5.99905 6.00756 6.13967 6.19326 6.30744 6.73449 7.09668 7.56481 7.65235 7.89894 8.27257 8.94075 9.52771 11.04153 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.064301 B = 0.003711 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.350390 B = 7543.840025 C = 7681.177695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.088 3.912 3 H 0.100 0.900 4 C -0.142 4.142 5 C -0.071 4.071 6 H 0.081 0.919 7 C -0.084 4.084 8 S -0.288 6.288 9 C -0.059 4.059 10 C 0.037 3.963 11 C -0.521 4.521 12 H 0.057 0.943 13 C 0.059 3.941 14 N -0.891 5.891 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.151 4.151 20 C 0.057 3.943 21 O -0.380 6.380 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.262 0.738 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.167 17.801 -9.480 20.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.030 3.970 3 H 0.118 0.882 4 C -0.181 4.181 5 C -0.090 4.090 6 H 0.100 0.900 7 C -0.232 4.232 8 S -0.060 6.060 9 C -0.206 4.206 10 C -0.001 4.001 11 C -0.561 4.561 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.529 5.529 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.189 4.189 20 C -0.019 4.019 21 O -0.299 6.299 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.833 17.243 -10.339 20.123 hybrid contribution 1.086 -0.122 2.014 2.291 sum 0.252 17.121 -8.326 19.040 Atomic orbital electron populations 1.22475 0.96431 1.03089 1.02562 1.22136 0.93478 0.96182 0.85200 0.88239 1.22266 1.01932 0.95471 0.98454 1.20965 1.00875 0.93563 0.93581 0.90048 1.23361 1.02725 0.96279 1.00865 1.86815 1.66206 1.11311 1.41696 1.23666 1.00879 1.02794 0.93303 1.18907 0.97377 0.86256 0.97599 1.21145 1.27658 0.97241 1.10052 0.92447 1.25016 0.95171 0.97070 0.97020 1.69980 1.35289 1.08995 1.38665 0.86469 0.79229 0.79162 0.82750 1.19704 1.20874 1.20877 1.22294 1.02015 1.00617 0.93988 1.22618 0.98821 0.81951 0.98537 1.87962 1.73802 1.25084 1.43091 0.91546 0.91478 0.91975 0.90817 0.90936 0.90669 0.90683 0.91513 0.91549 0.95568 0.95548 0.92834 0.91068 0.89422 0.88940 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.58 8.65 37.16 0.32 -1.26 16 2 C 0.09 0.82 3.91 -26.68 -0.10 0.72 16 3 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.14 -1.37 4.93 -26.59 -0.13 -1.51 16 5 C -0.07 -0.82 1.96 -90.43 -0.18 -1.00 16 6 H 0.08 0.98 6.62 -51.93 -0.34 0.63 16 7 C -0.08 -1.15 5.39 37.16 0.20 -0.95 16 8 S -0.29 -5.27 20.62 -107.50 -2.22 -7.49 16 9 C -0.06 -1.24 5.88 37.16 0.22 -1.02 16 10 C 0.04 0.98 4.98 -27.88 -0.14 0.84 16 11 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 15 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C -0.15 -1.77 5.19 -26.59 -0.14 -1.91 16 20 C 0.06 0.60 6.51 37.20 0.24 0.84 16 21 O -0.38 -4.34 10.60 -35.23 -0.37 -4.71 16 22 H 0.07 0.61 4.98 -51.93 -0.26 0.35 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 28 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 29 H 0.07 1.37 8.14 -51.92 -0.42 0.94 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.13 7.26 -51.93 -0.38 0.76 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.52 6.34 -51.93 -0.33 0.19 16 LS Contribution 304.44 15.07 4.59 4.59 Total: -1.00 -29.97 304.44 -8.75 -38.72 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -6.35 Total: -2.87 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -0.12 Total: -18.66 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.74 Total: -26.02 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.37 Total: -4.71 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -5.27 SS G_CDS: -2.22 Total: -7.49 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.97 -8.75 -38.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362459168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.890 kcal (2) G-P(sol) polarization free energy of solvation -29.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds