Wall clock time and date at job start Mon Mar 30 2020 05:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47657 * 2 1 4 4 C 1.53091 * 109.47678 * 120.03513 * 2 1 3 5 5 C 1.53177 * 109.16193 * 62.37830 * 4 2 1 6 6 H 1.09004 * 109.61731 * 297.06490 * 5 4 2 7 7 C 1.53005 * 109.54462 * 176.84620 * 5 4 2 8 8 S 1.81399 * 109.47445 * 175.44159 * 7 5 4 9 9 C 1.81394 * 102.99894 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.46950 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.47313 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99865 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00185 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99973 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99965 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47052 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47032 * 119.99460 * 15 13 11 18 18 H 1.48490 * 109.46937 * 239.99631 * 15 13 11 19 19 C 1.53176 * 109.03953 * 56.97661 * 5 4 2 20 20 C 1.53089 * 109.16231 * 303.01970 * 19 5 4 21 21 O 1.42900 * 109.47796 * 239.98002 * 2 1 3 22 22 H 1.09002 * 109.47424 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47244 * 300.02198 * 1 2 3 24 24 H 1.09002 * 109.46864 * 60.02247 * 1 2 3 25 25 H 1.09000 * 109.52652 * 302.46821 * 4 2 1 26 26 H 1.08998 * 109.51925 * 182.27624 * 4 2 1 27 27 H 1.09001 * 109.46962 * 55.43975 * 7 5 4 28 28 H 1.09004 * 109.46832 * 295.44139 * 7 5 4 29 29 H 1.09002 * 109.47501 * 299.99574 * 9 8 7 30 30 H 1.08998 * 109.47135 * 60.00434 * 9 8 7 31 31 H 1.08998 * 109.47409 * 299.99897 * 10 9 8 32 32 H 1.09002 * 109.47273 * 60.00233 * 10 9 8 33 33 H 0.96993 * 120.00062 * 180.02562 * 14 13 11 34 34 H 1.08993 * 109.52155 * 62.92501 * 19 5 4 35 35 H 1.09001 * 109.52126 * 183.05308 * 19 5 4 36 36 H 1.09005 * 109.48102 * 177.59244 * 20 19 5 37 37 H 1.09004 * 109.47977 * 297.61468 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7224 1.2495 5 6 1.5757 -2.1815 1.2118 6 1 0.4867 -2.2195 1.2412 7 6 2.1466 -2.9318 2.4168 8 16 1.4876 -4.6217 2.4447 9 6 2.2666 -5.3392 3.9174 10 6 1.8042 -6.7881 4.0841 11 6 2.4509 -7.3841 5.3080 12 1 3.1246 -6.7890 5.9067 13 6 2.1832 -8.6893 5.6628 14 7 1.3632 -9.4140 4.9334 15 14 2.9854 -9.4282 7.1793 16 1 3.8594 -8.4135 7.8212 17 1 1.9339 -9.8538 8.1378 18 1 3.8009 -10.6046 6.7844 19 6 2.0764 -2.8322 -0.0813 20 6 1.5645 -2.0283 -1.2793 21 8 2.0065 -0.6740 -1.1665 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5141 0.8897 24 1 -0.3633 0.5135 -0.8902 25 1 1.6420 -0.2360 2.1399 26 1 3.1297 -0.6876 1.2709 27 1 1.8626 -2.4159 3.3340 28 1 3.2335 -2.9669 2.3413 29 1 3.3504 -5.3141 3.8039 30 1 1.9799 -4.7632 4.7972 31 1 0.7205 -6.8128 4.1978 32 1 2.0906 -7.3644 3.2044 33 1 1.1746 -10.3320 5.1832 34 1 3.1663 -2.8400 -0.0868 35 1 1.7045 -3.8550 -0.1421 36 1 1.9531 -2.4619 -2.2008 37 1 0.4750 -2.0550 -1.2962 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362459168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:15 Heat of formation + Delta-G solvation = -98.199238 kcal Electronic energy + Delta-G solvation = -15463.630180 eV Core-core repulsion = 12944.154751 eV Total energy + Delta-G solvation = -2519.475428 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.76511 -35.89222 -35.76202 -33.15134 -32.91408 -30.14235 -27.94202 -27.26568 -24.46289 -23.60681 -22.61531 -20.19771 -18.68979 -17.36657 -17.23979 -16.80779 -16.52106 -16.10561 -15.61378 -15.48183 -15.18016 -14.53759 -14.31270 -14.14730 -13.57782 -13.33821 -13.25320 -13.03304 -12.91993 -12.66423 -12.36933 -12.20959 -12.15212 -11.97344 -11.70068 -11.65964 -11.22190 -10.93087 -10.71307 -10.62824 -10.40577 -8.60510 -8.24653 -6.38388 0.79567 1.40343 1.40678 1.54223 1.79302 2.39411 2.96082 3.08615 3.62023 3.70924 3.80766 4.04080 4.19961 4.24124 4.30524 4.36958 4.39825 4.46863 4.49207 4.60201 4.67956 4.80127 4.84544 4.86758 4.98506 5.05021 5.15584 5.21572 5.27995 5.36447 5.44392 5.48140 5.72346 6.09744 6.31782 6.76113 7.31320 8.87409 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.064301 B = 0.003711 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.350390 B = 7543.840025 C = 7681.177695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.083 3.917 3 H 0.117 0.883 4 C -0.135 4.135 5 C -0.067 4.067 6 H 0.079 0.921 7 C -0.068 4.068 8 S -0.313 6.313 9 C -0.051 4.051 10 C 0.044 3.956 11 C -0.543 4.543 12 H 0.066 0.934 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.973 3.027 16 H -0.259 1.259 17 H -0.277 1.277 18 H -0.277 1.277 19 C -0.150 4.150 20 C 0.060 3.940 21 O -0.395 6.395 22 H 0.055 0.945 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.074 0.926 31 H -0.004 1.004 32 H -0.004 1.004 33 H 0.266 0.734 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.578 19.546 -8.803 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.026 3.974 3 H 0.135 0.865 4 C -0.175 4.175 5 C -0.087 4.087 6 H 0.097 0.903 7 C -0.216 4.216 8 S -0.085 6.085 9 C -0.199 4.199 10 C 0.006 3.994 11 C -0.583 4.583 12 H 0.084 0.916 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.796 3.204 16 H -0.183 1.183 17 H -0.202 1.202 18 H -0.203 1.203 19 C -0.188 4.188 20 C -0.017 4.017 21 O -0.314 6.314 22 H 0.074 0.926 23 H 0.098 0.902 24 H 0.084 0.916 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.015 0.985 32 H 0.014 0.986 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.085 18.998 -9.660 21.313 hybrid contribution 0.824 -0.591 1.723 1.999 sum 0.738 18.407 -7.937 20.059 Atomic orbital electron populations 1.22455 0.95762 1.02661 1.03434 1.22325 0.94074 0.96721 0.84269 0.86519 1.22239 1.01998 0.93746 0.99491 1.20964 1.00641 0.94685 0.92365 0.90307 1.23471 1.02938 0.92600 1.02584 1.86884 1.66510 1.15352 1.39802 1.23304 1.01253 0.99970 0.95322 1.18680 0.95383 0.89372 0.95979 1.21587 1.27928 0.97939 1.10805 0.91566 1.26033 0.95606 0.97597 1.00479 1.70118 1.36751 1.09512 1.40739 0.85288 0.78338 0.78362 0.78378 1.18310 1.20224 1.20277 1.22247 1.01668 0.99946 0.94900 1.22615 0.99138 0.81670 0.98256 1.87949 1.74205 1.25228 1.44058 0.92579 0.90162 0.91615 0.89163 0.90905 0.89357 0.90016 0.90891 0.90778 0.98547 0.98584 0.92537 0.91500 0.91157 0.88085 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.69 8.65 71.98 0.62 -2.07 16 2 C 0.08 1.35 3.91 30.63 0.12 1.47 16 3 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 4 C -0.14 -2.25 4.93 30.68 0.15 -2.10 16 5 C -0.07 -1.44 1.96 -10.67 -0.02 -1.46 16 6 H 0.08 1.77 6.62 -2.39 -0.02 1.75 16 7 C -0.07 -1.74 5.39 71.98 0.39 -1.36 16 8 S -0.31 -11.46 20.62 -56.49 -1.16 -12.62 16 9 C -0.05 -2.15 5.88 71.98 0.42 -1.73 16 10 C 0.04 2.40 4.98 29.85 0.15 2.55 16 11 C -0.54 -31.00 9.11 25.60 0.23 -30.76 16 12 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 13 C 0.00 0.07 5.46 84.66 0.46 0.54 16 14 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 15 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 16 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 19 C -0.15 -3.36 5.19 30.68 0.16 -3.20 16 20 C 0.06 1.17 6.51 72.01 0.47 1.64 16 21 O -0.39 -8.26 10.60 -148.98 -1.58 -9.84 16 22 H 0.06 0.93 4.98 -2.39 -0.01 0.92 16 23 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.07 2.99 8.14 -2.39 -0.02 2.98 16 31 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 33 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.82 7.26 -2.39 -0.02 1.80 16 36 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.06 1.08 6.34 -2.38 -0.02 1.06 16 Total: -1.00 -64.89 304.44 3.74 -61.15 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 1.01 Total: 8.70 kcal Atomic # 6 Polarization: -39.65 SS G_CDS: 3.16 Total: -36.50 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.28 Total: -56.86 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -1.58 Total: -9.84 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -11.46 SS G_CDS: -1.16 Total: -12.62 kcal Total: -64.89 3.74 -61.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362459168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.048 kcal (2) G-P(sol) polarization free energy of solvation -64.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds