Wall clock time and date at job start Mon Mar 30 2020 05:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47248 * 2 1 4 4 C 1.52991 * 109.47371 * 56.85540 * 3 2 1 5 5 C 1.53001 * 109.47073 * 176.85610 * 3 2 1 6 6 O 1.42906 * 109.47325 * 59.99767 * 5 3 2 7 7 S 1.81407 * 109.46986 * 296.85176 * 3 2 1 8 8 C 1.81403 * 102.99900 * 177.01955 * 7 3 2 9 9 C 1.52998 * 109.46959 * 178.57938 * 8 7 3 10 10 C 1.50692 * 115.55096 * 39.61043 * 9 8 7 11 11 H 1.08001 * 120.00459 * 267.27810 * 10 9 8 12 12 C 1.37883 * 120.00227 * 87.27556 * 10 9 8 13 13 N 1.31509 * 120.00245 * 183.73494 * 12 10 9 14 14 Si 1.86799 * 119.99664 * 3.73429 * 12 10 9 15 15 H 1.48508 * 109.47130 * 84.93415 * 14 12 10 16 16 H 1.48495 * 109.47216 * 204.92891 * 14 12 10 17 17 H 1.48501 * 109.47320 * 324.93389 * 14 12 10 18 18 C 1.53000 * 117.49776 * 253.90283 * 9 8 7 19 19 C 1.53000 * 60.00038 * 252.51357 * 18 9 8 20 20 H 1.08996 * 109.47483 * 175.13515 * 1 2 3 21 21 H 1.09001 * 109.46786 * 295.13483 * 1 2 3 22 22 H 1.09003 * 109.47247 * 55.13301 * 1 2 3 23 23 H 1.09000 * 109.46768 * 239.99367 * 2 1 3 24 24 H 1.09006 * 109.46781 * 120.00040 * 2 1 3 25 25 H 1.08998 * 109.47403 * 59.99996 * 4 3 2 26 26 H 1.09000 * 109.47294 * 299.99763 * 4 3 2 27 27 H 1.09001 * 109.47290 * 180.02562 * 4 3 2 28 28 H 1.08996 * 109.47273 * 179.97438 * 5 3 2 29 29 H 1.08997 * 109.47133 * 300.00056 * 5 3 2 30 30 H 0.96698 * 113.99873 * 179.97438 * 6 5 3 31 31 H 1.08998 * 109.46964 * 298.58082 * 8 7 3 32 32 H 1.09007 * 109.46699 * 58.57894 * 8 7 3 33 33 H 0.97010 * 119.99881 * 180.02562 * 13 12 10 34 34 H 1.08999 * 117.49804 * 359.97438 * 18 9 8 35 35 H 1.08996 * 117.49919 * 145.02306 * 18 9 8 36 36 H 1.08998 * 117.50104 * 252.51293 * 19 18 9 37 37 H 1.08994 * 117.51992 * 107.47961 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4665 2.1862 1.2077 5 6 3.5680 1.4431 0.0791 6 8 4.1037 0.7484 -1.0490 7 16 1.5132 2.2700 -1.5259 8 6 2.1227 3.9640 -1.3027 9 6 1.7834 4.7954 -2.5414 10 6 0.4273 4.5375 -3.1458 11 1 0.3186 3.8131 -3.9395 12 6 -0.6750 5.2262 -2.6855 13 7 -1.8693 4.9491 -3.1611 14 14 -0.4717 6.5530 -1.3864 15 1 -0.1183 7.8378 -2.0420 16 1 -1.7447 6.7127 -0.6386 17 1 0.6094 6.1633 -0.4458 18 6 2.9283 5.1412 -3.4956 19 6 2.3233 6.2257 -2.6018 20 1 -0.3634 -1.0239 -0.0871 21 1 -0.3633 0.4365 0.9304 22 1 -0.3634 0.5875 -0.8432 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 1.7830 1.6890 2.1246 26 1 0.3780 2.1858 1.1514 27 1 1.8295 3.2140 1.2074 28 1 3.9314 2.4707 0.0787 29 1 3.8845 0.9458 0.9959 30 1 5.0698 0.7098 -1.0646 31 1 1.6500 4.4077 -0.4265 32 1 3.2036 3.9456 -1.1623 33 1 -2.6448 5.4340 -2.8376 34 1 3.9234 4.7767 -3.2406 35 1 2.7009 5.1821 -4.5607 36 1 1.6978 6.9800 -3.0790 37 1 2.9199 6.5744 -1.7589 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381818814.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:08 Heat of formation + Delta-G solvation = -35.035680 kcal Electronic energy + Delta-G solvation = -16572.348336 eV Core-core repulsion = 14055.611885 eV Total energy + Delta-G solvation = -2516.736451 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -37.66674 -36.93538 -34.91731 -32.02911 -30.14921 -27.75381 -26.26540 -25.30556 -23.16129 -21.64435 -20.10935 -18.93162 -17.22262 -16.45265 -15.56660 -14.97974 -14.92236 -14.22629 -14.15614 -13.74996 -13.28045 -12.89227 -12.60135 -12.42847 -12.31203 -12.15975 -11.70238 -11.49286 -11.12506 -10.82547 -10.64364 -10.56092 -10.43007 -10.30387 -10.13084 -9.81707 -9.59536 -9.04299 -8.81939 -8.52625 -8.27546 -6.52238 -6.04200 -4.04569 2.46893 3.30909 3.39919 3.41530 3.56146 4.35732 4.46482 4.92678 4.96054 5.03413 5.24272 5.36284 5.46291 5.53139 5.67161 5.73306 5.78651 5.81745 5.94242 5.95418 6.11502 6.13820 6.20352 6.25557 6.33766 6.44498 6.48143 6.56596 6.72122 6.74923 7.05287 7.13047 7.76803 7.76962 8.55676 9.00999 9.58916 11.07768 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.024252 B = 0.009283 C = 0.008023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.285331 B = 3015.441769 C = 3489.188584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.086 4.086 3 C -0.067 4.067 4 C -0.143 4.143 5 C 0.088 3.912 6 O -0.552 6.552 7 S -0.152 6.152 8 C -0.057 4.057 9 C 0.017 3.983 10 C -0.474 4.474 11 H 0.082 0.918 12 C 0.084 3.916 13 N -0.892 5.892 14 Si 0.879 3.121 15 H -0.279 1.279 16 H -0.296 1.296 17 H -0.264 1.264 18 C -0.175 4.175 19 C -0.202 4.202 20 H 0.048 0.952 21 H 0.052 0.948 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.370 0.630 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.264 0.736 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.767 -5.782 8.893 14.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.124 4.124 3 C -0.176 4.176 4 C -0.201 4.201 5 C 0.008 3.992 6 O -0.356 6.356 7 S 0.079 5.921 8 C -0.205 4.205 9 C 0.016 3.984 10 C -0.513 4.513 11 H 0.100 0.900 12 C -0.119 4.119 13 N -0.529 5.529 14 Si 0.708 3.292 15 H -0.205 1.205 16 H -0.223 1.223 17 H -0.188 1.188 18 C -0.212 4.212 19 C -0.241 4.241 20 H 0.067 0.933 21 H 0.071 0.929 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.216 0.784 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.348 -6.268 7.907 13.095 hybrid contribution 1.410 1.576 2.029 2.930 sum 9.758 -4.691 9.935 14.694 Atomic orbital electron populations 1.21934 0.95208 1.01332 1.03162 1.21173 0.96378 0.92846 1.02000 1.22957 0.95125 0.99838 0.99716 1.22096 1.02757 0.99508 0.95784 1.22241 0.93637 0.95230 0.88047 1.86641 1.24575 1.78327 1.46037 1.87456 1.74767 1.06714 1.23180 1.23257 0.99570 0.95670 1.02013 1.19048 0.95330 0.91330 0.92741 1.20142 0.87545 1.23467 1.20104 0.90004 1.24899 0.94883 0.96566 0.95532 1.69892 0.98435 1.41217 1.43377 0.86909 0.76960 0.82735 0.82646 1.20540 1.22288 1.18844 1.22857 0.96767 1.04067 0.97532 1.23039 1.04896 0.94037 1.02151 0.93287 0.92859 0.90396 0.90749 0.92358 0.92756 0.90327 0.92727 0.94098 0.94083 0.78409 0.91431 0.93101 0.92652 0.91033 0.89389 0.89214 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.20 37.16 0.34 -2.02 16 2 C -0.09 -1.26 4.80 -26.73 -0.13 -1.39 16 3 C -0.07 -1.06 0.52 -90.63 -0.05 -1.10 16 4 C -0.14 -2.09 7.84 37.15 0.29 -1.80 16 5 C 0.09 1.22 5.79 37.16 0.22 1.43 16 6 O -0.55 -7.78 12.64 -35.23 -0.45 -8.22 16 7 S -0.15 -3.17 17.76 -107.50 -1.91 -5.08 16 8 C -0.06 -1.19 5.04 37.16 0.19 -1.01 16 9 C 0.02 0.41 1.14 -155.66 -0.18 0.23 16 10 C -0.47 -13.17 8.14 -34.44 -0.28 -13.45 16 11 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 12 C 0.08 2.39 5.47 -17.82 -0.10 2.30 16 13 N -0.89 -27.07 13.96 55.43 0.77 -26.30 16 14 Si 0.88 21.78 24.86 -169.99 -4.23 17.55 16 15 H -0.28 -6.78 6.99 56.52 0.39 -6.39 16 16 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 17 H -0.26 -6.19 5.73 56.52 0.32 -5.87 16 18 C -0.18 -3.64 9.88 -26.73 -0.26 -3.91 16 19 C -0.20 -4.33 7.52 -26.73 -0.20 -4.53 16 20 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 21 H 0.05 0.73 6.66 -51.93 -0.35 0.39 16 22 H 0.08 1.38 6.89 -51.93 -0.36 1.03 16 23 H 0.07 1.19 7.78 -51.93 -0.40 0.78 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.22 6.48 -51.93 -0.34 0.88 16 27 H 0.05 0.83 6.61 -51.93 -0.34 0.48 16 28 H 0.04 0.57 6.77 -51.93 -0.35 0.22 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.37 3.37 9.12 45.56 0.42 3.79 16 31 H 0.07 1.45 5.58 -51.92 -0.29 1.16 16 32 H 0.05 0.97 6.81 -51.92 -0.35 0.61 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 35 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 36 H 0.09 2.02 6.85 -51.93 -0.36 1.66 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 297.21 15.07 4.48 4.48 Total: -1.00 -30.85 297.21 -6.81 -37.66 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.32 Total: 5.15 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: -0.16 Total: -25.24 kcal Atomic # 7 Polarization: -27.07 SS G_CDS: 0.77 Total: -26.30 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -0.45 Total: -8.22 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.23 Total: 17.55 kcal Atomic # 16 Polarization: -3.17 SS G_CDS: -1.91 Total: -5.08 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.85 -6.81 -37.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381818814.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.625 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds