Wall clock time and date at job start Mon Mar 30 2020 05:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47248 * 2 1 4 4 C 1.52991 * 109.47371 * 56.85540 * 3 2 1 5 5 C 1.53001 * 109.47073 * 176.85610 * 3 2 1 6 6 O 1.42906 * 109.47325 * 59.99767 * 5 3 2 7 7 S 1.81407 * 109.46986 * 296.85176 * 3 2 1 8 8 C 1.81403 * 102.99900 * 177.01955 * 7 3 2 9 9 C 1.52998 * 109.46959 * 178.57938 * 8 7 3 10 10 C 1.50692 * 115.55096 * 39.61043 * 9 8 7 11 11 H 1.08001 * 120.00459 * 267.27810 * 10 9 8 12 12 C 1.37883 * 120.00227 * 87.27556 * 10 9 8 13 13 N 1.31509 * 120.00245 * 183.73494 * 12 10 9 14 14 Si 1.86799 * 119.99664 * 3.73429 * 12 10 9 15 15 H 1.48508 * 109.47130 * 84.93415 * 14 12 10 16 16 H 1.48495 * 109.47216 * 204.92891 * 14 12 10 17 17 H 1.48501 * 109.47320 * 324.93389 * 14 12 10 18 18 C 1.53000 * 117.49776 * 253.90283 * 9 8 7 19 19 C 1.53000 * 60.00038 * 252.51357 * 18 9 8 20 20 H 1.08996 * 109.47483 * 175.13515 * 1 2 3 21 21 H 1.09001 * 109.46786 * 295.13483 * 1 2 3 22 22 H 1.09003 * 109.47247 * 55.13301 * 1 2 3 23 23 H 1.09000 * 109.46768 * 239.99367 * 2 1 3 24 24 H 1.09006 * 109.46781 * 120.00040 * 2 1 3 25 25 H 1.08998 * 109.47403 * 59.99996 * 4 3 2 26 26 H 1.09000 * 109.47294 * 299.99763 * 4 3 2 27 27 H 1.09001 * 109.47290 * 180.02562 * 4 3 2 28 28 H 1.08996 * 109.47273 * 179.97438 * 5 3 2 29 29 H 1.08997 * 109.47133 * 300.00056 * 5 3 2 30 30 H 0.96698 * 113.99873 * 179.97438 * 6 5 3 31 31 H 1.08998 * 109.46964 * 298.58082 * 8 7 3 32 32 H 1.09007 * 109.46699 * 58.57894 * 8 7 3 33 33 H 0.97010 * 119.99881 * 180.02562 * 13 12 10 34 34 H 1.08999 * 117.49804 * 359.97438 * 18 9 8 35 35 H 1.08996 * 117.49919 * 145.02306 * 18 9 8 36 36 H 1.08998 * 117.50104 * 252.51293 * 19 18 9 37 37 H 1.08994 * 117.51992 * 107.47961 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4665 2.1862 1.2077 5 6 3.5680 1.4431 0.0791 6 8 4.1037 0.7484 -1.0490 7 16 1.5132 2.2700 -1.5259 8 6 2.1227 3.9640 -1.3027 9 6 1.7834 4.7954 -2.5414 10 6 0.4273 4.5375 -3.1458 11 1 0.3186 3.8131 -3.9395 12 6 -0.6750 5.2262 -2.6855 13 7 -1.8693 4.9491 -3.1611 14 14 -0.4717 6.5530 -1.3864 15 1 -0.1183 7.8378 -2.0420 16 1 -1.7447 6.7127 -0.6386 17 1 0.6094 6.1633 -0.4458 18 6 2.9283 5.1412 -3.4956 19 6 2.3233 6.2257 -2.6018 20 1 -0.3634 -1.0239 -0.0871 21 1 -0.3633 0.4365 0.9304 22 1 -0.3634 0.5875 -0.8432 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 1.7830 1.6890 2.1246 26 1 0.3780 2.1858 1.1514 27 1 1.8295 3.2140 1.2074 28 1 3.9314 2.4707 0.0787 29 1 3.8845 0.9458 0.9959 30 1 5.0698 0.7098 -1.0646 31 1 1.6500 4.4077 -0.4265 32 1 3.2036 3.9456 -1.1623 33 1 -2.6448 5.4340 -2.8376 34 1 3.9234 4.7767 -3.2406 35 1 2.7009 5.1821 -4.5607 36 1 1.6978 6.9800 -3.0790 37 1 2.9199 6.5744 -1.7589 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381818814.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:07 Heat of formation + Delta-G solvation = -56.231305 kcal Electronic energy + Delta-G solvation = -16573.267447 eV Core-core repulsion = 14055.611885 eV Total energy + Delta-G solvation = -2517.655562 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.78135 -38.69979 -36.02260 -34.18602 -31.36931 -29.39360 -27.39920 -27.36079 -24.30432 -23.33743 -21.48143 -20.68756 -18.41074 -18.24715 -17.05062 -16.70859 -16.12532 -15.78949 -15.43526 -15.35119 -14.86368 -14.56336 -14.48495 -13.74211 -13.50561 -13.38233 -13.14134 -12.88431 -12.71879 -12.50692 -12.22372 -12.04757 -11.94230 -11.74086 -11.59928 -11.51721 -10.97463 -10.78068 -10.58760 -10.34938 -9.98864 -8.22785 -8.14585 -6.26502 1.01594 1.35573 1.36616 1.47930 2.07860 2.39816 3.12748 3.20356 3.37591 3.80360 3.89954 4.04313 4.23361 4.27384 4.38224 4.42387 4.49311 4.56120 4.61930 4.64763 4.69438 4.76408 4.82607 4.84096 4.99551 5.04945 5.08241 5.18489 5.30744 5.39006 5.45838 5.52331 5.73029 6.35782 6.77418 7.00701 7.39652 8.93654 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.024252 B = 0.009283 C = 0.008023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.285331 B = 3015.441769 C = 3489.188584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.082 4.082 3 C -0.049 4.049 4 C -0.142 4.142 5 C 0.091 3.909 6 O -0.575 6.575 7 S -0.240 6.240 8 C -0.036 4.036 9 C -0.015 4.015 10 C -0.465 4.465 11 H 0.026 0.974 12 C 0.026 3.974 13 N -0.947 5.947 14 Si 0.938 3.062 15 H -0.268 1.268 16 H -0.302 1.302 17 H -0.237 1.237 18 C -0.162 4.162 19 C -0.190 4.190 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.038 0.962 23 H 0.056 0.944 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.391 0.609 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.263 0.737 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.557 -5.525 11.827 18.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.120 4.120 3 C -0.159 4.159 4 C -0.200 4.200 5 C 0.011 3.989 6 O -0.382 6.382 7 S -0.010 6.010 8 C -0.184 4.184 9 C -0.016 4.016 10 C -0.503 4.503 11 H 0.044 0.956 12 C -0.171 4.171 13 N -0.587 5.587 14 Si 0.763 3.237 15 H -0.193 1.193 16 H -0.229 1.229 17 H -0.160 1.160 18 C -0.199 4.199 19 C -0.229 4.229 20 H 0.083 0.917 21 H 0.083 0.917 22 H 0.057 0.943 23 H 0.075 0.925 24 H 0.111 0.889 25 H 0.109 0.891 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.240 0.760 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.187 -6.004 10.830 16.688 hybrid contribution 0.575 1.328 1.050 1.788 sum 11.762 -4.675 11.880 17.359 Atomic orbital electron populations 1.21888 0.95823 1.01680 1.02023 1.21180 0.95828 0.92338 1.02695 1.23048 0.97130 0.99396 0.96356 1.22075 1.01764 0.99579 0.96622 1.22221 0.91565 0.95820 0.89284 1.86600 1.26744 1.78340 1.46522 1.87771 1.76382 1.08518 1.28369 1.23015 1.00876 0.94413 1.00103 1.18999 0.93926 0.93854 0.94851 1.20151 0.90339 1.21417 1.18405 0.95566 1.25721 0.94315 0.99100 0.98006 1.70056 0.99504 1.43276 1.45869 0.85946 0.77395 0.80008 0.80338 1.19338 1.22907 1.16022 1.22894 0.97259 1.03142 0.96620 1.23076 1.04355 0.92473 1.03012 0.91718 0.91694 0.94294 0.92479 0.88921 0.89097 0.91924 0.93124 0.94046 0.90602 0.75968 0.91884 0.90473 0.92828 0.87855 0.90632 0.90582 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.55 9.20 71.98 0.66 -3.88 16 2 C -0.08 -2.23 4.80 30.59 0.15 -2.09 16 3 C -0.05 -1.45 0.52 -10.80 -0.01 -1.46 16 4 C -0.14 -3.72 7.84 71.98 0.56 -3.15 16 5 C 0.09 2.15 5.79 71.98 0.42 2.56 16 6 O -0.57 -14.58 12.64 -148.98 -1.88 -16.47 16 7 S -0.24 -10.08 17.76 -56.49 -1.00 -11.08 16 8 C -0.04 -1.44 5.04 71.98 0.36 -1.08 16 9 C -0.01 -0.67 1.14 -52.93 -0.06 -0.73 16 10 C -0.46 -26.78 8.14 25.60 0.21 -26.57 16 11 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 12 C 0.03 1.52 5.47 84.66 0.46 1.98 16 13 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 14 Si 0.94 44.83 24.86 68.60 1.71 46.53 16 15 H -0.27 -12.24 6.99 99.48 0.70 -11.54 16 16 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 17 H -0.24 -10.20 5.73 99.48 0.57 -9.63 16 18 C -0.16 -6.43 9.88 30.59 0.30 -6.13 16 19 C -0.19 -7.60 7.52 30.59 0.23 -7.37 16 20 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 21 H 0.06 1.70 6.66 -2.39 -0.02 1.68 16 22 H 0.04 1.43 6.89 -2.39 -0.02 1.41 16 23 H 0.06 1.76 7.78 -2.39 -0.02 1.74 16 24 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 25 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.06 1.84 6.48 -2.39 -0.02 1.82 16 27 H 0.05 1.37 6.61 -2.39 -0.02 1.35 16 28 H 0.04 0.98 6.77 -2.39 -0.02 0.96 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.39 5.88 9.12 -74.06 -0.68 5.20 16 31 H 0.06 2.55 5.58 -2.39 -0.01 2.54 16 32 H 0.08 2.66 6.81 -2.39 -0.02 2.64 16 33 H 0.26 15.78 8.31 -92.70 -0.77 15.01 16 34 H 0.10 3.44 8.08 -2.39 -0.02 3.42 16 35 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 36 H 0.08 3.25 6.85 -2.39 -0.02 3.24 16 37 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 Total: -1.00 -70.82 297.21 2.63 -68.19 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.22 Total: 20.81 kcal Atomic # 6 Polarization: -51.20 SS G_CDS: 3.29 Total: -47.91 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.30 Total: -60.07 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -1.88 Total: -16.47 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.71 Total: 46.53 kcal Atomic # 16 Polarization: -10.08 SS G_CDS: -1.00 Total: -11.08 kcal Total: -70.82 2.63 -68.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381818814.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.954 kcal (2) G-P(sol) polarization free energy of solvation -70.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds