Wall clock time and date at job start Mon Mar 30 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30586 * 1 3 3 Si 1.86801 * 120.00210 * 2 1 4 4 H 1.48507 * 109.47016 * 264.91474 * 3 2 1 5 5 H 1.48504 * 109.47127 * 24.91347 * 3 2 1 6 6 H 1.48495 * 109.47351 * 144.91597 * 3 2 1 7 7 C 1.40356 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99715 * 163.48935 * 7 2 1 9 9 C 1.40170 * 119.99795 * 343.49779 * 7 2 1 10 10 C 1.39069 * 119.74447 * 155.45041 * 9 7 2 11 11 C 1.42026 * 118.74248 * 180.02562 * 10 9 7 12 12 N 1.32215 * 120.83219 * 180.02562 * 11 10 9 13 13 C 1.46505 * 120.00042 * 177.83703 * 12 11 10 14 14 H 1.09000 * 109.35223 * 1.65001 * 13 12 11 15 15 C 1.50071 * 109.35375 * 241.92986 * 13 12 11 16 16 C 1.29256 * 124.21484 * 222.50872 * 15 13 12 17 17 C 1.50065 * 124.01769 * 0.73015 * 16 15 13 18 18 C 1.53024 * 110.14830 * 342.74263 * 17 16 15 19 19 C 1.53021 * 109.35727 * 121.37638 * 13 12 11 20 20 C 1.46915 * 118.33449 * 0.02562 * 11 10 9 21 21 C 1.34375 * 119.36903 * 0.27331 * 20 11 10 22 22 N 1.36419 * 121.21916 * 359.44200 * 21 20 11 23 23 H 0.97000 * 119.08985 * 180.28960 * 22 21 20 24 24 H 0.96995 * 119.99829 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.62862 * 359.97438 * 10 9 7 26 26 H 1.08001 * 117.96684 * 42.64363 * 15 13 12 27 27 H 1.07999 * 118.02215 * 180.60622 * 16 15 13 28 28 H 1.08999 * 109.36000 * 222.53179 * 17 16 15 29 29 H 1.09005 * 109.24238 * 102.87747 * 17 16 15 30 30 H 1.09001 * 109.63873 * 289.74427 * 18 17 16 31 31 H 1.09005 * 109.81826 * 169.21971 * 18 17 16 32 32 H 1.08997 * 109.63909 * 289.33044 * 19 13 12 33 33 H 1.08999 * 109.64301 * 49.74355 * 19 13 12 34 34 H 1.08006 * 120.31580 * 180.02562 * 20 11 10 35 35 H 1.07998 * 119.38479 * 179.72357 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 2.5949 1.9843 -1.3946 5 1 1.3878 2.6814 0.5898 6 1 3.4796 1.4736 0.8047 7 6 2.0076 -1.2155 0.0005 8 1 3.0543 -1.2349 -0.2653 9 6 1.3501 -2.4042 0.3459 10 6 1.8345 -3.6214 -0.1208 11 6 1.1514 -4.8127 0.2417 12 7 1.5763 -5.9921 -0.1784 13 6 0.8859 -7.2129 0.2451 14 1 0.0366 -6.9476 0.8748 15 6 1.8340 -8.0750 1.0261 16 6 1.9296 -9.3570 0.8915 17 6 1.1150 -10.1624 -0.0779 18 6 -0.0969 -9.3542 -0.5470 19 6 0.3865 -7.9672 -0.9890 20 6 -0.0392 -4.7015 1.0952 21 6 -0.4483 -3.4875 1.5007 22 7 0.2279 -2.3577 1.1439 23 1 -0.0923 -1.4975 1.4575 24 1 -0.4849 0.8400 0.0004 25 1 2.7131 -3.6600 -0.7477 26 1 2.4770 -7.5948 1.7489 27 1 2.6405 -9.8809 1.5132 28 1 0.7736 -11.0760 0.4087 29 1 1.7323 -10.4203 -0.9385 30 1 -0.8076 -9.2506 0.2729 31 1 -0.5760 -9.8597 -1.3855 32 1 -0.4386 -7.4195 -1.4441 33 1 1.1986 -8.0708 -1.7086 34 1 -0.5829 -5.5868 1.3906 35 1 -1.3262 -3.4051 2.1245 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381852251.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:21 Heat of formation + Delta-G solvation = 40.775363 kcal Electronic energy + Delta-G solvation = -16751.931747 eV Core-core repulsion = 14135.331509 eV Total energy + Delta-G solvation = -2616.600238 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.66260 -37.84292 -34.52429 -33.35019 -30.67611 -30.54129 -29.90868 -27.33244 -25.87000 -22.58083 -21.73947 -21.44001 -20.07782 -18.03174 -17.27810 -16.62644 -15.90329 -15.28756 -14.82966 -14.41066 -13.74923 -13.66056 -13.09571 -12.94058 -12.59870 -12.26956 -12.19182 -11.89790 -11.60443 -11.48061 -11.18570 -11.03503 -10.76026 -10.48014 -10.30315 -10.12465 -9.89933 -9.65932 -9.27075 -8.66033 -8.23003 -7.40912 -7.27445 -5.97074 -4.77961 2.60138 2.72272 2.86702 2.87974 2.92494 3.17180 3.65013 4.27522 4.62010 5.15969 5.23955 5.29635 5.40289 5.58814 5.75990 5.88288 5.95047 6.02976 6.09975 6.15631 6.28664 6.35255 6.45524 6.55871 6.69941 6.77795 6.84214 6.93692 6.94490 7.21583 7.39580 7.46617 7.70832 7.76926 7.98245 8.27021 8.29394 8.80099 8.92193 9.71495 9.75704 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.054202 B = 0.004574 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.458435 B = 6119.573696 C = 6291.870376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.077 3.923 3 Si 0.923 3.077 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.468 4.468 8 H 0.103 0.897 9 C 0.332 3.668 10 C -0.357 4.357 11 C 0.283 3.717 12 N -0.660 5.660 13 C 0.109 3.891 14 H 0.045 0.955 15 C -0.105 4.105 16 C -0.192 4.192 17 C -0.081 4.081 18 C -0.119 4.119 19 C -0.104 4.104 20 C -0.304 4.304 21 C 0.127 3.873 22 N -0.602 5.602 23 H 0.412 0.588 24 H 0.292 0.708 25 H 0.113 0.887 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.117 0.883 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.551 -4.484 3.189 6.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.141 4.141 3 Si 0.746 3.254 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.180 1.180 7 C -0.501 4.501 8 H 0.121 0.879 9 C 0.223 3.777 10 C -0.385 4.385 11 C 0.120 3.880 12 N -0.386 5.386 13 C -0.002 4.002 14 H 0.062 0.938 15 C -0.124 4.124 16 C -0.211 4.211 17 C -0.118 4.118 18 C -0.157 4.157 19 C -0.142 4.142 20 C -0.334 4.334 21 C -0.003 4.003 22 N -0.212 5.212 23 H 0.252 0.748 24 H 0.103 0.897 25 H 0.131 0.869 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.103 -4.874 2.655 5.936 hybrid contribution -0.663 1.083 0.712 1.456 sum -2.767 -3.792 3.367 5.776 Atomic orbital electron populations 1.69373 1.07805 1.30846 1.36142 1.26183 0.94924 1.02326 0.90671 0.86058 0.80379 0.78920 0.80053 1.18819 1.19955 1.18037 1.19487 0.99105 0.89633 1.41899 0.87945 1.17616 0.81559 0.94359 0.84164 1.20210 1.10185 0.88263 1.19890 1.20293 0.87849 0.93082 0.86743 1.73529 1.34218 0.95324 1.35558 1.20187 0.93706 0.93021 0.93325 0.93796 1.22278 0.97925 0.94373 0.97845 1.21785 1.02119 0.95532 1.01618 1.20325 0.96162 0.97415 0.97861 1.21625 0.97199 0.96653 1.00225 1.21571 1.00087 0.94054 0.98488 1.22294 1.04421 0.95583 1.11090 1.21232 0.95064 0.87419 0.96577 1.42032 1.26108 1.08534 1.44516 0.74815 0.89701 0.86899 0.89028 0.88970 0.92198 0.91698 0.92408 0.92437 0.92934 0.91710 0.86543 0.85211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -17.79 11.20 55.57 0.62 -17.17 16 2 C 0.08 1.67 5.17 -17.28 -0.09 1.59 16 3 Si 0.92 16.35 29.59 -169.99 -5.03 11.32 16 4 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 5 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 6 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 7 C -0.47 -11.11 9.03 -38.06 -0.34 -11.46 16 8 H 0.10 2.37 7.90 -52.49 -0.41 1.96 16 9 C 0.33 8.12 6.34 -84.16 -0.53 7.59 16 10 C -0.36 -9.18 9.83 -37.82 -0.37 -9.55 16 11 C 0.28 7.04 6.81 -82.74 -0.56 6.48 16 12 N -0.66 -16.30 10.18 -52.19 -0.53 -16.83 16 13 C 0.11 2.27 2.97 -69.37 -0.21 2.06 16 14 H 0.04 0.92 5.18 -51.93 -0.27 0.65 16 15 C -0.11 -2.02 9.36 -35.85 -0.34 -2.35 16 16 C -0.19 -3.12 9.80 -35.85 -0.35 -3.47 16 17 C -0.08 -1.14 6.12 -28.18 -0.17 -1.31 16 18 C -0.12 -1.76 6.01 -26.52 -0.16 -1.92 16 19 C -0.10 -1.92 5.61 -26.52 -0.15 -2.07 16 20 C -0.30 -6.57 9.40 -37.43 -0.35 -6.93 16 21 C 0.13 2.50 11.15 -16.87 -0.19 2.32 16 22 N -0.60 -13.12 4.87 -10.84 -0.05 -13.17 16 23 H 0.41 8.55 6.46 -40.82 -0.26 8.29 16 24 H 0.29 5.75 8.29 -40.82 -0.34 5.42 16 25 H 0.11 2.98 8.06 -52.49 -0.42 2.55 16 26 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.09 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 34 H 0.12 2.31 5.85 -52.48 -0.31 2.01 16 35 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 289.48 15.07 4.36 4.36 Total: -1.00 -26.63 289.48 -9.06 -35.69 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -4.61 Total: 14.83 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -3.81 Total: -19.03 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.04 Total: -47.17 kcal Atomic # 14 Polarization: 16.35 SS G_CDS: -5.03 Total: 11.32 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -26.63 -9.06 -35.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381852251.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.463 kcal (2) G-P(sol) polarization free energy of solvation -26.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds