Wall clock time and date at job start Mon Mar 30 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30586 * 1 3 3 Si 1.86801 * 120.00210 * 2 1 4 4 H 1.48507 * 109.47016 * 264.91474 * 3 2 1 5 5 H 1.48504 * 109.47127 * 24.91347 * 3 2 1 6 6 H 1.48495 * 109.47351 * 144.91597 * 3 2 1 7 7 C 1.40356 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99715 * 163.48935 * 7 2 1 9 9 C 1.40170 * 119.99795 * 343.49779 * 7 2 1 10 10 C 1.39069 * 119.74447 * 155.45041 * 9 7 2 11 11 C 1.42026 * 118.74248 * 180.02562 * 10 9 7 12 12 N 1.32215 * 120.83219 * 180.02562 * 11 10 9 13 13 C 1.46505 * 120.00042 * 177.83703 * 12 11 10 14 14 H 1.09000 * 109.35223 * 1.65001 * 13 12 11 15 15 C 1.50071 * 109.35375 * 241.92986 * 13 12 11 16 16 C 1.29256 * 124.21484 * 222.50872 * 15 13 12 17 17 C 1.50065 * 124.01769 * 0.73015 * 16 15 13 18 18 C 1.53024 * 110.14830 * 342.74263 * 17 16 15 19 19 C 1.53021 * 109.35727 * 121.37638 * 13 12 11 20 20 C 1.46915 * 118.33449 * 0.02562 * 11 10 9 21 21 C 1.34375 * 119.36903 * 0.27331 * 20 11 10 22 22 N 1.36419 * 121.21916 * 359.44200 * 21 20 11 23 23 H 0.97000 * 119.08985 * 180.28960 * 22 21 20 24 24 H 0.96995 * 119.99829 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.62862 * 359.97438 * 10 9 7 26 26 H 1.08001 * 117.96684 * 42.64363 * 15 13 12 27 27 H 1.07999 * 118.02215 * 180.60622 * 16 15 13 28 28 H 1.08999 * 109.36000 * 222.53179 * 17 16 15 29 29 H 1.09005 * 109.24238 * 102.87747 * 17 16 15 30 30 H 1.09001 * 109.63873 * 289.74427 * 18 17 16 31 31 H 1.09005 * 109.81826 * 169.21971 * 18 17 16 32 32 H 1.08997 * 109.63909 * 289.33044 * 19 13 12 33 33 H 1.08999 * 109.64301 * 49.74355 * 19 13 12 34 34 H 1.08006 * 120.31580 * 180.02562 * 20 11 10 35 35 H 1.07998 * 119.38479 * 179.72357 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 2.5949 1.9843 -1.3946 5 1 1.3878 2.6814 0.5898 6 1 3.4796 1.4736 0.8047 7 6 2.0076 -1.2155 0.0005 8 1 3.0543 -1.2349 -0.2653 9 6 1.3501 -2.4042 0.3459 10 6 1.8345 -3.6214 -0.1208 11 6 1.1514 -4.8127 0.2417 12 7 1.5763 -5.9921 -0.1784 13 6 0.8859 -7.2129 0.2451 14 1 0.0366 -6.9476 0.8748 15 6 1.8340 -8.0750 1.0261 16 6 1.9296 -9.3570 0.8915 17 6 1.1150 -10.1624 -0.0779 18 6 -0.0969 -9.3542 -0.5470 19 6 0.3865 -7.9672 -0.9890 20 6 -0.0392 -4.7015 1.0952 21 6 -0.4483 -3.4875 1.5007 22 7 0.2279 -2.3577 1.1439 23 1 -0.0923 -1.4975 1.4575 24 1 -0.4849 0.8400 0.0004 25 1 2.7131 -3.6600 -0.7477 26 1 2.4770 -7.5948 1.7489 27 1 2.6405 -9.8809 1.5132 28 1 0.7736 -11.0760 0.4087 29 1 1.7323 -10.4203 -0.9385 30 1 -0.8076 -9.2506 0.2729 31 1 -0.5760 -9.8597 -1.3855 32 1 -0.4386 -7.4195 -1.4441 33 1 1.1986 -8.0708 -1.7086 34 1 -0.5829 -5.5868 1.3906 35 1 -1.3262 -3.4051 2.1245 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381852251.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:21 Heat of formation + Delta-G solvation = 25.667743 kcal Electronic energy + Delta-G solvation = -16752.586862 eV Core-core repulsion = 14135.331509 eV Total energy + Delta-G solvation = -2617.255353 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.37432 -39.28722 -36.22700 -35.04554 -32.43806 -31.89810 -31.47127 -28.98884 -27.61227 -24.11051 -23.25676 -22.97906 -21.75356 -19.78527 -18.68449 -18.38338 -17.43114 -16.85247 -16.41455 -16.06233 -15.37470 -14.96291 -14.66654 -14.51182 -14.15512 -13.68050 -13.60059 -13.39845 -13.17249 -12.94247 -12.83604 -12.65927 -12.37133 -11.96373 -11.79936 -11.69776 -11.38113 -11.26576 -10.82472 -10.09173 -9.99404 -9.13672 -8.96864 -7.75086 -6.65301 0.94973 1.06612 1.42041 1.45778 1.53633 1.63430 2.16285 2.55496 2.91145 3.47133 3.90204 3.96917 4.02223 4.12719 4.36173 4.46192 4.57755 4.60014 4.73771 4.79705 4.93934 4.96365 5.01251 5.03166 5.06189 5.13496 5.19417 5.46304 5.49883 5.63314 5.80536 5.83500 5.98429 6.06943 6.13764 6.48132 6.50818 6.99550 7.18522 7.98049 8.04526 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.054202 B = 0.004574 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.458435 B = 6119.573696 C = 6291.870376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.051 3.949 3 Si 0.995 3.005 4 H -0.265 1.265 5 H -0.256 1.256 6 H -0.259 1.259 7 C -0.497 4.497 8 H 0.095 0.905 9 C 0.323 3.677 10 C -0.402 4.402 11 C 0.263 3.737 12 N -0.696 5.696 13 C 0.106 3.894 14 H 0.039 0.961 15 C -0.148 4.148 16 C -0.161 4.161 17 C -0.083 4.083 18 C -0.112 4.112 19 C -0.102 4.102 20 C -0.323 4.323 21 C 0.140 3.860 22 N -0.601 5.601 23 H 0.418 0.582 24 H 0.306 0.694 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.046 0.954 34 H 0.133 0.867 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.961 -4.660 4.028 7.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.167 4.167 3 Si 0.814 3.186 4 H -0.190 1.190 5 H -0.180 1.180 6 H -0.183 1.183 7 C -0.529 4.529 8 H 0.113 0.887 9 C 0.213 3.787 10 C -0.432 4.432 11 C 0.099 3.901 12 N -0.422 5.422 13 C -0.004 4.004 14 H 0.056 0.944 15 C -0.167 4.167 16 C -0.180 4.180 17 C -0.120 4.120 18 C -0.150 4.150 19 C -0.140 4.140 20 C -0.352 4.352 21 C 0.011 3.989 22 N -0.212 5.212 23 H 0.258 0.742 24 H 0.118 0.882 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.133 0.867 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.150 0.850 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.539 -5.076 3.499 7.109 hybrid contribution -0.234 1.129 0.413 1.225 sum -3.773 -3.947 3.912 6.717 Atomic orbital electron populations 1.69353 1.08746 1.32701 1.34170 1.26913 0.95687 1.04719 0.89413 0.84994 0.79050 0.74707 0.79799 1.18978 1.18013 1.18272 1.19703 0.99211 0.90788 1.43199 0.88729 1.17714 0.82465 0.94093 0.84397 1.20143 1.10851 0.89999 1.22172 1.20474 0.89177 0.92765 0.87659 1.73388 1.35833 0.96737 1.36256 1.20272 0.93767 0.92031 0.94363 0.94372 1.22088 0.99595 0.95521 0.99455 1.22183 1.00839 0.94548 1.00397 1.20465 0.95622 0.98061 0.97869 1.21606 0.97770 0.94182 1.01402 1.21534 0.99021 0.96366 0.97069 1.22353 1.03959 0.97206 1.11708 1.21914 0.95532 0.86014 0.95421 1.42034 1.25606 1.09487 1.44089 0.74166 0.88203 0.89782 0.90982 0.86700 0.88639 0.90638 0.91780 0.89841 0.94044 0.93490 0.84956 0.79796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -34.87 11.20 21.89 0.25 -34.62 16 2 C 0.05 2.17 5.17 85.39 0.44 2.61 16 3 Si 0.99 32.46 29.59 68.60 2.03 34.49 16 4 H -0.27 -8.72 7.11 99.48 0.71 -8.02 16 5 H -0.26 -7.61 7.11 99.48 0.71 -6.90 16 6 H -0.26 -8.52 7.11 99.48 0.71 -7.81 16 7 C -0.50 -24.31 9.03 23.26 0.21 -24.10 16 8 H 0.09 4.62 7.90 -2.91 -0.02 4.60 16 9 C 0.32 16.45 6.34 38.88 0.25 16.70 16 10 C -0.40 -22.28 9.83 23.41 0.23 -22.05 16 11 C 0.26 13.83 6.81 42.30 0.29 14.11 16 12 N -0.70 -36.49 10.18 -319.04 -3.25 -39.74 16 13 C 0.11 4.58 2.97 44.05 0.13 4.71 16 14 H 0.04 1.65 5.18 -2.39 -0.01 1.64 16 15 C -0.15 -5.75 9.36 27.22 0.25 -5.49 16 16 C -0.16 -4.94 9.80 27.22 0.27 -4.67 16 17 C -0.08 -2.08 6.12 29.66 0.18 -1.90 16 18 C -0.11 -3.04 6.01 30.73 0.18 -2.85 16 19 C -0.10 -3.80 5.61 30.73 0.17 -3.63 16 20 C -0.32 -14.20 9.40 23.66 0.22 -13.98 16 21 C 0.14 5.41 11.15 83.10 0.93 6.34 16 22 N -0.60 -26.22 4.87 -188.19 -0.92 -27.13 16 23 H 0.42 16.94 6.46 -92.71 -0.60 16.34 16 24 H 0.31 11.37 8.29 -92.71 -0.77 10.60 16 25 H 0.08 4.92 8.06 -2.91 -0.02 4.90 16 26 H 0.07 3.00 8.06 -2.91 -0.02 2.98 16 27 H 0.12 3.00 8.06 -2.91 -0.02 2.98 16 28 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.06 1.68 8.12 -2.39 -0.02 1.66 16 31 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 33 H 0.05 1.88 8.13 -2.39 -0.02 1.86 16 34 H 0.13 5.28 5.85 -2.91 -0.02 5.26 16 35 H 0.19 5.00 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -61.53 289.48 2.36 -59.17 By element: Atomic # 1 Polarization: 41.56 SS G_CDS: 0.49 Total: 42.05 kcal Atomic # 6 Polarization: -37.97 SS G_CDS: 3.76 Total: -34.21 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -3.92 Total: -101.49 kcal Atomic # 14 Polarization: 32.46 SS G_CDS: 2.03 Total: 34.49 kcal Total: -61.53 2.36 -59.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381852251.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.839 kcal (2) G-P(sol) polarization free energy of solvation -61.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds