Wall clock time and date at job start Mon Mar 30 2020 05:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81402 * 102.99974 * 2 1 4 4 H 1.09000 * 109.46792 * 305.00214 * 3 2 1 5 5 C 1.53000 * 109.46870 * 64.99708 * 3 2 1 6 6 C 1.52994 * 109.47181 * 184.99574 * 3 2 1 7 7 C 1.53001 * 109.46955 * 65.00427 * 6 3 2 8 8 O 1.42897 * 109.47246 * 175.00373 * 7 6 3 9 9 C 1.42902 * 114.00106 * 183.25885 * 8 7 6 10 10 C 1.53002 * 109.47094 * 183.27397 * 9 8 7 11 11 C 1.50697 * 115.55197 * 295.11212 * 10 9 8 12 12 H 1.07995 * 119.99677 * 114.86021 * 11 10 9 13 13 C 1.37872 * 119.99830 * 294.58594 * 11 10 9 14 14 N 1.31516 * 119.99526 * 174.21955 * 13 11 10 15 15 Si 1.86799 * 120.00469 * 354.21641 * 13 11 10 16 16 H 1.48505 * 109.47113 * 87.92037 * 15 13 11 17 17 H 1.48496 * 109.47339 * 207.92191 * 15 13 11 18 18 H 1.48501 * 109.47057 * 327.92750 * 15 13 11 19 19 C 1.52998 * 117.49617 * 80.78399 * 10 9 8 20 20 C 1.53003 * 117.49461 * 149.44010 * 10 9 8 21 21 H 1.08990 * 109.47283 * 300.00343 * 1 2 3 22 22 H 1.08998 * 109.46469 * 60.00155 * 1 2 3 23 23 H 1.09003 * 109.46723 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47315 * 60.00049 * 5 3 2 25 25 H 1.09004 * 109.47150 * 180.02562 * 5 3 2 26 26 H 1.09003 * 109.47313 * 299.99917 * 5 3 2 27 27 H 1.08999 * 109.47333 * 305.00156 * 6 3 2 28 28 H 1.09001 * 109.47092 * 184.99672 * 6 3 2 29 29 H 1.08995 * 109.47310 * 54.99719 * 7 6 3 30 30 H 1.09004 * 109.46793 * 295.00001 * 7 6 3 31 31 H 1.08998 * 109.47073 * 63.27433 * 9 8 7 32 32 H 1.08992 * 109.47175 * 303.27811 * 9 8 7 33 33 H 0.97002 * 119.99918 * 179.97438 * 14 13 11 34 34 H 1.09004 * 117.50188 * 215.00110 * 19 10 9 35 35 H 1.09004 * 117.49900 * 0.02562 * 19 10 9 36 36 H 1.09002 * 117.50431 * 359.97438 * 20 10 9 37 37 H 1.09004 * 117.49454 * 144.97699 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4015 1.3073 6 6 3.7370 1.9412 -0.1256 7 6 4.1989 1.4192 -1.4876 8 8 5.5929 1.6868 -1.6525 9 6 6.1116 1.3033 -2.9276 10 6 7.6197 1.5590 -2.9627 11 6 8.0366 3.0036 -2.8607 12 1 8.5948 3.3450 -2.0016 13 6 7.7102 3.8879 -3.8668 14 7 7.9731 5.1689 -3.7271 15 14 6.8949 3.2667 -5.4284 16 1 5.4214 3.2496 -5.2444 17 1 7.2421 4.1645 -6.5591 18 1 7.3728 1.8919 -5.7231 19 6 8.5286 0.5138 -2.3129 20 6 8.4722 0.6377 -3.8375 21 1 -0.3633 0.5138 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 2.2353 1.9150 2.1491 25 1 1.9875 3.4637 1.3072 26 1 0.6635 2.2778 1.3969 27 1 4.2339 1.3804 0.6660 28 1 3.9902 2.9977 -0.0366 29 1 3.6373 1.9180 -2.2774 30 1 4.0264 0.3443 -1.5423 31 1 5.6256 1.8884 -3.7084 32 1 5.9187 0.2437 -3.0946 33 1 7.7438 5.7911 -4.4351 34 1 9.4282 0.8710 -1.8116 35 1 8.0522 -0.3562 -1.8608 36 1 7.9588 -0.1508 -4.3878 37 1 9.3344 1.0766 -4.3396 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382958236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:03 Heat of formation + Delta-G solvation = -34.358338 kcal Electronic energy + Delta-G solvation = -15804.598702 eV Core-core repulsion = 13287.891623 eV Total energy + Delta-G solvation = -2516.707079 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -37.88645 -36.24896 -34.65560 -32.03604 -29.89090 -28.57003 -26.52807 -24.85882 -23.11129 -21.49726 -21.33557 -18.95896 -16.76640 -16.46548 -15.78111 -15.42073 -15.03564 -14.54907 -14.30181 -13.95498 -13.76043 -13.30750 -12.94976 -12.77590 -12.54195 -12.47906 -11.77521 -11.67341 -11.30171 -11.12360 -11.01777 -10.68453 -10.56925 -10.44092 -10.07997 -9.86193 -9.44240 -9.11571 -8.80382 -8.46709 -8.38082 -7.77470 -6.03222 -4.01428 1.56124 2.45266 3.28360 3.39169 3.45021 4.08358 4.46795 4.73647 4.79767 4.92121 4.94471 5.05556 5.23079 5.35439 5.40300 5.42622 5.53776 5.64578 5.66474 5.83493 5.90462 5.95745 6.06205 6.08954 6.23947 6.29721 6.36648 6.49528 6.57456 6.79021 7.10237 7.19385 7.81241 8.04473 8.60614 9.01125 9.60192 11.09377 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.028398 B = 0.005448 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.741126 B = 5137.950908 C = 5389.472380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.260 6.260 3 C -0.051 4.051 4 H 0.088 0.912 5 C -0.146 4.146 6 C -0.098 4.098 7 C 0.057 3.943 8 O -0.362 6.362 9 C 0.100 3.900 10 C -0.003 4.003 11 C -0.469 4.469 12 H 0.077 0.923 13 C 0.077 3.923 14 N -0.900 5.900 15 Si 0.867 3.133 16 H -0.280 1.280 17 H -0.292 1.292 18 H -0.251 1.251 19 C -0.176 4.176 20 C -0.189 4.189 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.098 0.902 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.025 0.975 33 H 0.263 0.737 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.292 -8.634 6.018 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.034 6.034 3 C -0.180 4.180 4 H 0.106 0.894 5 C -0.205 4.205 6 C -0.136 4.136 7 C -0.020 4.020 8 O -0.281 6.281 9 C 0.024 3.976 10 C -0.004 4.004 11 C -0.506 4.506 12 H 0.095 0.905 13 C -0.125 4.125 14 N -0.538 5.538 15 Si 0.695 3.305 16 H -0.207 1.207 17 H -0.219 1.219 18 H -0.175 1.175 19 C -0.213 4.213 20 C -0.227 4.227 21 H 0.094 0.906 22 H 0.093 0.907 23 H 0.116 0.884 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.509 -9.238 6.062 17.452 hybrid contribution -1.601 0.701 -1.188 2.113 sum -15.110 -8.537 4.874 18.027 Atomic orbital electron populations 1.23392 0.95089 1.06175 1.04708 1.87047 1.06431 1.12060 1.97874 1.23160 1.00145 0.93189 1.01518 0.89382 1.22067 1.00829 1.01382 0.96210 1.21326 0.90676 1.03577 0.98065 1.22435 0.84510 0.98923 0.96147 1.87990 1.20971 1.84278 1.34827 1.22269 0.95469 0.95313 0.84572 1.19317 0.87287 0.93516 1.00247 1.20236 1.35066 0.88777 1.06546 0.90523 1.24904 0.94954 0.94460 0.98163 1.69905 1.48309 1.01933 1.33603 0.87054 0.79667 0.80188 0.83578 1.20689 1.21887 1.17521 1.22734 1.02810 1.01049 0.94701 1.23064 1.03927 1.02947 0.92775 0.90622 0.90688 0.88358 0.91159 0.91259 0.92685 0.90247 0.89168 0.94228 0.93275 0.94290 0.95720 0.92721 0.89684 0.90928 0.91368 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 10.45 101.05 1.06 0.02 16 2 S -0.26 -3.11 20.69 -107.50 -2.22 -5.33 16 3 C -0.05 -0.60 2.82 -26.73 -0.08 -0.68 16 4 H 0.09 1.00 8.14 -51.92 -0.42 0.57 16 5 C -0.15 -1.39 9.10 37.16 0.34 -1.05 16 6 C -0.10 -1.43 5.05 -26.73 -0.14 -1.56 16 7 C 0.06 1.00 5.68 37.16 0.21 1.21 16 8 O -0.36 -8.10 10.27 -35.23 -0.36 -8.46 16 9 C 0.10 2.28 5.39 37.16 0.20 2.48 16 10 C 0.00 -0.07 1.06 -155.66 -0.16 -0.23 16 11 C -0.47 -13.57 9.32 -34.44 -0.32 -13.89 16 12 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 13 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 14 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 15 Si 0.87 21.73 25.08 -169.99 -4.26 17.46 16 16 H -0.28 -6.89 6.79 56.52 0.38 -6.51 16 17 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 18 H -0.25 -5.90 5.84 56.52 0.33 -5.57 16 19 C -0.18 -3.78 9.96 -26.70 -0.27 -4.04 16 20 C -0.19 -4.12 8.08 -26.69 -0.22 -4.33 16 21 H 0.07 0.54 7.14 -51.93 -0.37 0.17 16 22 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 23 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.45 6.92 -51.93 -0.36 0.09 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.82 7.32 -51.93 -0.38 0.44 16 31 H 0.04 0.92 4.92 -51.93 -0.26 0.67 16 32 H 0.02 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.08 1.82 8.14 -51.93 -0.42 1.39 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 LS Contribution 310.58 15.07 4.68 4.68 Total: -1.00 -31.27 310.58 -7.37 -38.64 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.51 Total: 0.01 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 0.53 Total: -19.93 kcal Atomic # 7 Polarization: -27.85 SS G_CDS: 0.77 Total: -27.08 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.36 Total: -8.46 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.26 Total: 17.46 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.22 Total: -5.33 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.27 -7.37 -38.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382958236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.282 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds