Wall clock time and date at job start Mon Mar 30 2020 05:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81402 * 102.99974 * 2 1 4 4 H 1.09000 * 109.46792 * 305.00214 * 3 2 1 5 5 C 1.53000 * 109.46870 * 64.99708 * 3 2 1 6 6 C 1.52994 * 109.47181 * 184.99574 * 3 2 1 7 7 C 1.53001 * 109.46955 * 65.00427 * 6 3 2 8 8 O 1.42897 * 109.47246 * 175.00373 * 7 6 3 9 9 C 1.42902 * 114.00106 * 183.25885 * 8 7 6 10 10 C 1.53002 * 109.47094 * 183.27397 * 9 8 7 11 11 C 1.50697 * 115.55197 * 295.11212 * 10 9 8 12 12 H 1.07995 * 119.99677 * 114.86021 * 11 10 9 13 13 C 1.37872 * 119.99830 * 294.58594 * 11 10 9 14 14 N 1.31516 * 119.99526 * 174.21955 * 13 11 10 15 15 Si 1.86799 * 120.00469 * 354.21641 * 13 11 10 16 16 H 1.48505 * 109.47113 * 87.92037 * 15 13 11 17 17 H 1.48496 * 109.47339 * 207.92191 * 15 13 11 18 18 H 1.48501 * 109.47057 * 327.92750 * 15 13 11 19 19 C 1.52998 * 117.49617 * 80.78399 * 10 9 8 20 20 C 1.53003 * 117.49461 * 149.44010 * 10 9 8 21 21 H 1.08990 * 109.47283 * 300.00343 * 1 2 3 22 22 H 1.08998 * 109.46469 * 60.00155 * 1 2 3 23 23 H 1.09003 * 109.46723 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47315 * 60.00049 * 5 3 2 25 25 H 1.09004 * 109.47150 * 180.02562 * 5 3 2 26 26 H 1.09003 * 109.47313 * 299.99917 * 5 3 2 27 27 H 1.08999 * 109.47333 * 305.00156 * 6 3 2 28 28 H 1.09001 * 109.47092 * 184.99672 * 6 3 2 29 29 H 1.08995 * 109.47310 * 54.99719 * 7 6 3 30 30 H 1.09004 * 109.46793 * 295.00001 * 7 6 3 31 31 H 1.08998 * 109.47073 * 63.27433 * 9 8 7 32 32 H 1.08992 * 109.47175 * 303.27811 * 9 8 7 33 33 H 0.97002 * 119.99918 * 179.97438 * 14 13 11 34 34 H 1.09004 * 117.50188 * 215.00110 * 19 10 9 35 35 H 1.09004 * 117.49900 * 0.02562 * 19 10 9 36 36 H 1.09002 * 117.50431 * 359.97438 * 20 10 9 37 37 H 1.09004 * 117.49454 * 144.97699 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4015 1.3073 6 6 3.7370 1.9412 -0.1256 7 6 4.1989 1.4192 -1.4876 8 8 5.5929 1.6868 -1.6525 9 6 6.1116 1.3033 -2.9276 10 6 7.6197 1.5590 -2.9627 11 6 8.0366 3.0036 -2.8607 12 1 8.5948 3.3450 -2.0016 13 6 7.7102 3.8879 -3.8668 14 7 7.9731 5.1689 -3.7271 15 14 6.8949 3.2667 -5.4284 16 1 5.4214 3.2496 -5.2444 17 1 7.2421 4.1645 -6.5591 18 1 7.3728 1.8919 -5.7231 19 6 8.5286 0.5138 -2.3129 20 6 8.4722 0.6377 -3.8375 21 1 -0.3633 0.5138 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 2.2353 1.9150 2.1491 25 1 1.9875 3.4637 1.3072 26 1 0.6635 2.2778 1.3969 27 1 4.2339 1.3804 0.6660 28 1 3.9902 2.9977 -0.0366 29 1 3.6373 1.9180 -2.2774 30 1 4.0264 0.3443 -1.5423 31 1 5.6256 1.8884 -3.7084 32 1 5.9187 0.2437 -3.0946 33 1 7.7438 5.7911 -4.4351 34 1 9.4282 0.8710 -1.8116 35 1 8.0522 -0.3562 -1.8608 36 1 7.9588 -0.1508 -4.3878 37 1 9.3344 1.0766 -4.3396 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382958236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:03 Heat of formation + Delta-G solvation = -53.451159 kcal Electronic energy + Delta-G solvation = -15805.426629 eV Core-core repulsion = 13287.891623 eV Total energy + Delta-G solvation = -2517.535006 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.55305 -37.82359 -35.86278 -34.24916 -30.90463 -29.40559 -28.35020 -26.79934 -24.29087 -23.15937 -22.49172 -20.91502 -18.52494 -17.75729 -17.33171 -17.02793 -16.49572 -15.96011 -15.60512 -15.18983 -14.86675 -14.71230 -14.39743 -14.09115 -13.91261 -13.50603 -13.22239 -12.98615 -12.85731 -12.53282 -12.27500 -12.15893 -12.08822 -11.98008 -11.97856 -11.38224 -10.96759 -10.79719 -10.67345 -10.40210 -10.22224 -8.68113 -8.27303 -6.30871 0.72171 1.30866 1.37180 1.49772 1.65900 2.37370 2.63220 3.03805 3.42011 3.78892 3.83271 4.05185 4.17406 4.26453 4.32140 4.34321 4.37523 4.39991 4.43195 4.48238 4.58595 4.69856 4.78249 4.79451 4.89499 4.92753 4.99630 5.07020 5.09329 5.22252 5.31602 5.50036 5.71639 6.31274 6.47804 6.74012 7.34655 8.89338 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.028398 B = 0.005448 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.741126 B = 5137.950908 C = 5389.472380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.309 6.309 3 C -0.041 4.041 4 H 0.092 0.908 5 C -0.142 4.142 6 C -0.094 4.094 7 C 0.055 3.945 8 O -0.394 6.394 9 C 0.104 3.896 10 C -0.039 4.039 11 C -0.475 4.475 12 H 0.023 0.977 13 C 0.019 3.981 14 N -0.952 5.952 15 Si 0.931 3.069 16 H -0.272 1.272 17 H -0.293 1.293 18 H -0.221 1.221 19 C -0.164 4.164 20 C -0.172 4.172 21 H 0.089 0.911 22 H 0.082 0.918 23 H 0.110 0.890 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.027 0.973 32 H 0.057 0.943 33 H 0.265 0.735 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.401 -10.908 5.228 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.084 6.084 3 C -0.169 4.169 4 H 0.110 0.890 5 C -0.201 4.201 6 C -0.132 4.132 7 C -0.022 4.022 8 O -0.313 6.313 9 C 0.028 3.972 10 C -0.040 4.040 11 C -0.513 4.513 12 H 0.042 0.958 13 C -0.178 4.178 14 N -0.592 5.592 15 Si 0.755 3.245 16 H -0.198 1.198 17 H -0.220 1.220 18 H -0.143 1.143 19 C -0.201 4.201 20 C -0.209 4.209 21 H 0.108 0.892 22 H 0.101 0.899 23 H 0.129 0.871 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.617 -11.539 5.287 20.125 hybrid contribution -0.933 1.416 -0.810 1.879 sum -16.550 -10.123 4.477 19.910 Atomic orbital electron populations 1.23451 0.91277 1.07373 1.05828 1.87179 1.10672 1.12521 1.98031 1.23051 0.97792 0.93204 1.02887 0.88956 1.22044 1.01961 1.01253 0.94811 1.21287 0.92989 1.02552 0.96411 1.22651 0.82177 0.99774 0.97582 1.87957 1.23686 1.84844 1.34833 1.22156 0.93743 0.96896 0.84446 1.19302 0.89215 0.91445 1.04059 1.20382 1.34246 0.91900 1.04738 0.95836 1.25786 0.95761 0.94335 1.01879 1.70066 1.50496 1.03603 1.35040 0.86036 0.78883 0.80993 0.78598 1.19813 1.21998 1.14292 1.22789 1.01652 1.00579 0.95098 1.23098 1.02660 1.02126 0.93012 0.89172 0.89877 0.87116 0.91412 0.90952 0.90753 0.90762 0.90320 0.94156 0.92167 0.95471 0.92478 0.92651 0.90651 0.88145 0.87921 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.45 113.37 1.19 -0.32 16 2 S -0.31 -6.83 20.69 -56.49 -1.17 -8.00 16 3 C -0.04 -0.89 2.82 30.59 0.09 -0.81 16 4 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 5 C -0.14 -2.44 9.10 71.98 0.66 -1.79 16 6 C -0.09 -2.70 5.05 30.59 0.15 -2.55 16 7 C 0.05 1.87 5.68 71.98 0.41 2.28 16 8 O -0.39 -17.45 10.27 -148.98 -1.53 -18.98 16 9 C 0.10 4.51 5.39 71.98 0.39 4.90 16 10 C -0.04 -1.88 1.06 -52.93 -0.06 -1.94 16 11 C -0.48 -28.32 9.32 25.60 0.24 -28.08 16 12 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 13 C 0.02 1.14 5.47 84.65 0.46 1.60 16 14 N -0.95 -61.15 13.96 21.45 0.30 -60.85 16 15 Si 0.93 44.51 25.08 68.60 1.72 46.23 16 16 H -0.27 -12.58 6.79 99.48 0.68 -11.90 16 17 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 18 H -0.22 -9.35 5.84 99.48 0.58 -8.77 16 19 C -0.16 -6.74 9.96 30.62 0.30 -6.44 16 20 C -0.17 -6.92 8.08 30.62 0.25 -6.68 16 21 H 0.09 0.98 7.14 -2.40 -0.02 0.97 16 22 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 25 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.07 1.00 6.92 -2.39 -0.02 0.98 16 27 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.91 7.32 -2.39 -0.02 1.89 16 31 H 0.03 1.23 4.92 -2.39 -0.01 1.22 16 32 H 0.06 2.09 8.09 -2.39 -0.02 2.07 16 33 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 34 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 35 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 36 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 37 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -69.79 310.58 4.25 -65.54 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.85 Total: 15.88 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 4.08 Total: -39.81 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: 0.30 Total: -60.85 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -1.53 Total: -18.98 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.72 Total: 46.23 kcal Atomic # 16 Polarization: -6.83 SS G_CDS: -1.17 Total: -8.00 kcal Total: -69.79 4.25 -65.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382958236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.093 kcal (2) G-P(sol) polarization free energy of solvation -69.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds