Wall clock time and date at job start Mon Mar 30 2020 05:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81398 * 102.99954 * 2 1 4 4 H 1.09001 * 109.47502 * 55.00387 * 3 2 1 5 5 C 1.53007 * 109.47510 * 295.00357 * 3 2 1 6 6 C 1.53003 * 109.47324 * 175.00296 * 3 2 1 7 7 C 1.53003 * 109.46850 * 295.00266 * 6 3 2 8 8 O 1.42901 * 109.47019 * 179.97438 * 7 6 3 9 9 C 1.42904 * 114.00133 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47121 * 179.97438 * 9 8 7 11 11 C 1.50699 * 115.54795 * 294.89024 * 10 9 8 12 12 H 1.07996 * 120.00362 * 95.17336 * 11 10 9 13 13 C 1.37877 * 119.99865 * 274.89118 * 11 10 9 14 14 N 1.31518 * 119.99846 * 6.39172 * 13 11 10 15 15 Si 1.86799 * 120.00241 * 186.38899 * 13 11 10 16 16 H 1.48495 * 109.47324 * 90.00003 * 15 13 11 17 17 H 1.48501 * 109.47189 * 210.00352 * 15 13 11 18 18 H 1.48502 * 109.46799 * 330.00099 * 15 13 11 19 19 C 1.53000 * 117.49924 * 80.55893 * 10 9 8 20 20 C 1.52989 * 117.49528 * 149.21923 * 10 9 8 21 21 H 1.08998 * 109.47159 * 59.99673 * 1 2 3 22 22 H 1.08999 * 109.46614 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46521 * 299.99667 * 1 2 3 24 24 H 1.08991 * 109.47167 * 179.97438 * 5 3 2 25 25 H 1.09001 * 109.46413 * 299.99787 * 5 3 2 26 26 H 1.09000 * 109.46558 * 59.99814 * 5 3 2 27 27 H 1.09000 * 109.46945 * 175.00020 * 6 3 2 28 28 H 1.09001 * 109.46981 * 54.99939 * 6 3 2 29 29 H 1.08997 * 109.47302 * 59.99645 * 7 6 3 30 30 H 1.09001 * 109.47061 * 299.99624 * 7 6 3 31 31 H 1.09003 * 109.46230 * 60.00126 * 9 8 7 32 32 H 1.08997 * 109.47275 * 300.00618 * 9 8 7 33 33 H 0.96998 * 119.99908 * 180.02562 * 14 13 11 34 34 H 1.08996 * 117.49905 * 215.00346 * 19 10 9 35 35 H 1.09000 * 117.49427 * 0.02562 * 19 10 9 36 36 H 1.09003 * 117.50629 * 359.97438 * 20 10 9 37 37 H 1.09006 * 117.49951 * 144.97781 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2542 0.8418 5 6 1.7427 2.4017 -1.3073 6 6 3.7370 1.9412 0.1256 7 6 4.1990 1.4191 1.4876 8 8 5.6139 1.5808 1.6048 9 6 6.1505 1.1224 2.8474 10 6 7.6644 1.3429 2.8616 11 6 8.4477 0.5394 1.8556 12 1 8.7057 0.9733 0.9009 13 6 8.8400 -0.7477 2.1564 14 7 8.4254 -1.3191 3.2661 15 14 9.9602 -1.6799 0.9879 16 1 11.3771 -1.4278 1.3537 17 1 9.6755 -3.1342 1.0838 18 1 9.7184 -1.2189 -0.4029 19 6 8.1705 2.7487 3.1911 20 6 8.3252 1.6198 4.2133 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 1.9875 3.4638 -1.3071 25 1 2.2354 1.9151 -2.1491 26 1 0.6635 2.2779 -1.3968 27 1 3.9902 2.9977 0.0365 28 1 4.2339 1.3805 -0.6660 29 1 3.9457 0.3627 1.5767 30 1 3.7020 1.9799 2.2793 31 1 5.9373 0.0599 2.9652 32 1 5.6943 1.6775 3.6670 33 1 8.7017 -2.2245 3.4779 34 1 9.0700 3.0923 2.6804 35 1 7.4249 3.5162 3.3982 36 1 7.6815 1.6454 5.0926 37 1 9.3265 1.2206 4.3753 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382958238.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:05 Heat of formation + Delta-G solvation = -39.307877 kcal Electronic energy + Delta-G solvation = -15685.459348 eV Core-core repulsion = 13168.537641 eV Total energy + Delta-G solvation = -2516.921707 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -37.60591 -36.02751 -34.54887 -31.82941 -29.80457 -28.48064 -26.03237 -24.87743 -23.00301 -21.35166 -20.98815 -19.04361 -16.64542 -16.22658 -15.45649 -15.28792 -14.63910 -14.55848 -14.33273 -13.93942 -13.68226 -13.13951 -12.98767 -12.80487 -12.30449 -12.05680 -11.60332 -11.39643 -11.12733 -10.92201 -10.89033 -10.77186 -10.46814 -10.39287 -10.11721 -9.76726 -9.39857 -8.93762 -8.49792 -8.33760 -8.02991 -7.67128 -5.95033 -3.97876 1.63299 2.53449 3.36389 3.42787 3.47423 4.24574 4.49815 4.77028 4.90639 4.97706 5.01100 5.22502 5.35630 5.42855 5.45689 5.52470 5.58756 5.66718 5.78911 5.90040 5.97146 6.21087 6.32432 6.35561 6.42850 6.50937 6.78811 6.80267 6.89160 7.14428 7.51279 7.59718 7.98608 8.25524 8.56700 9.02709 9.66413 11.14883 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.024362 B = 0.005364 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.045788 B = 5218.347920 C = 5745.294711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.250 6.250 3 C -0.053 4.053 4 H 0.086 0.914 5 C -0.146 4.146 6 C -0.098 4.098 7 C 0.059 3.941 8 O -0.374 6.374 9 C 0.111 3.889 10 C 0.044 3.956 11 C -0.480 4.480 12 H 0.061 0.939 13 C 0.068 3.932 14 N -0.885 5.885 15 Si 0.890 3.110 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.206 4.206 20 C -0.153 4.153 21 H 0.074 0.926 22 H 0.098 0.902 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.012 0.988 33 H 0.259 0.741 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.650 5.352 -4.904 16.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.024 6.024 3 C -0.182 4.182 4 H 0.104 0.896 5 C -0.205 4.205 6 C -0.136 4.136 7 C -0.018 4.018 8 O -0.293 6.293 9 C 0.035 3.965 10 C 0.044 3.956 11 C -0.518 4.518 12 H 0.079 0.921 13 C -0.135 4.135 14 N -0.523 5.523 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.244 4.244 20 C -0.190 4.190 21 H 0.093 0.907 22 H 0.117 0.883 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.030 0.970 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.852 4.372 -4.934 15.341 hybrid contribution -0.509 0.269 -0.204 0.611 sum -14.361 4.642 -5.138 15.943 Atomic orbital electron populations 1.23404 0.95507 1.06204 1.04521 1.87310 1.05885 1.11397 1.97810 1.23137 1.00190 0.93645 1.01231 0.89560 1.22070 1.00854 1.01108 0.96437 1.21324 0.90712 1.02798 0.98789 1.22380 0.84266 0.99776 0.95403 1.87914 1.18445 1.84135 1.38811 1.22147 0.94492 0.97478 0.82429 1.18747 0.89287 0.92311 0.95272 1.20388 1.33163 0.97611 1.00655 0.92132 1.24976 0.95959 0.97248 0.95274 1.70007 1.44064 1.13825 1.24371 0.86623 0.81048 0.78950 0.81598 1.20727 1.21314 1.19785 1.22952 1.02348 0.92860 1.06195 1.22523 1.01744 1.02123 0.92633 0.90746 0.88331 0.90764 0.91527 0.91128 0.92707 0.89923 0.90042 0.92873 0.94816 0.92781 0.96971 0.93162 0.90443 0.91741 0.91957 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 10.45 101.05 1.06 -0.08 16 2 S -0.25 -3.26 20.60 -107.50 -2.21 -5.47 16 3 C -0.05 -0.62 2.82 -26.73 -0.08 -0.70 16 4 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 5 C -0.15 -1.37 9.10 37.16 0.34 -1.03 16 6 C -0.10 -1.42 5.05 -26.73 -0.14 -1.56 16 7 C 0.06 1.06 5.77 37.16 0.21 1.28 16 8 O -0.37 -8.55 10.27 -35.23 -0.36 -8.92 16 9 C 0.11 2.68 5.76 37.16 0.21 2.90 16 10 C 0.04 1.15 1.60 -155.67 -0.25 0.90 16 11 C -0.48 -13.74 8.76 -34.44 -0.30 -14.04 16 12 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 13 C 0.07 1.92 5.39 -17.82 -0.10 1.82 16 14 N -0.89 -25.73 12.93 55.43 0.72 -25.01 16 15 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 C -0.21 -4.75 9.96 -26.69 -0.27 -5.02 16 20 C -0.15 -3.70 9.43 -26.70 -0.25 -3.95 16 21 H 0.07 0.57 7.14 -51.92 -0.37 0.20 16 22 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 23 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.44 6.92 -51.93 -0.36 0.08 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.05 1.00 7.13 -51.93 -0.37 0.63 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.01 0.27 8.09 -51.93 -0.42 -0.15 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.08 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 320.02 15.07 4.82 4.82 Total: -1.00 -30.25 320.02 -8.17 -38.42 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -6.56 Total: -1.22 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 0.45 Total: -19.48 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.72 Total: -25.01 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.36 Total: -8.92 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -2.21 Total: -5.47 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.25 -8.17 -38.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382958238.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.884 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds