Wall clock time and date at job start Mon Mar 30 2020 05:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81398 * 102.99954 * 2 1 4 4 H 1.09001 * 109.47502 * 55.00387 * 3 2 1 5 5 C 1.53007 * 109.47510 * 295.00357 * 3 2 1 6 6 C 1.53003 * 109.47324 * 175.00296 * 3 2 1 7 7 C 1.53003 * 109.46850 * 295.00266 * 6 3 2 8 8 O 1.42901 * 109.47019 * 179.97438 * 7 6 3 9 9 C 1.42904 * 114.00133 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47121 * 179.97438 * 9 8 7 11 11 C 1.50699 * 115.54795 * 294.89024 * 10 9 8 12 12 H 1.07996 * 120.00362 * 95.17336 * 11 10 9 13 13 C 1.37877 * 119.99865 * 274.89118 * 11 10 9 14 14 N 1.31518 * 119.99846 * 6.39172 * 13 11 10 15 15 Si 1.86799 * 120.00241 * 186.38899 * 13 11 10 16 16 H 1.48495 * 109.47324 * 90.00003 * 15 13 11 17 17 H 1.48501 * 109.47189 * 210.00352 * 15 13 11 18 18 H 1.48502 * 109.46799 * 330.00099 * 15 13 11 19 19 C 1.53000 * 117.49924 * 80.55893 * 10 9 8 20 20 C 1.52989 * 117.49528 * 149.21923 * 10 9 8 21 21 H 1.08998 * 109.47159 * 59.99673 * 1 2 3 22 22 H 1.08999 * 109.46614 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46521 * 299.99667 * 1 2 3 24 24 H 1.08991 * 109.47167 * 179.97438 * 5 3 2 25 25 H 1.09001 * 109.46413 * 299.99787 * 5 3 2 26 26 H 1.09000 * 109.46558 * 59.99814 * 5 3 2 27 27 H 1.09000 * 109.46945 * 175.00020 * 6 3 2 28 28 H 1.09001 * 109.46981 * 54.99939 * 6 3 2 29 29 H 1.08997 * 109.47302 * 59.99645 * 7 6 3 30 30 H 1.09001 * 109.47061 * 299.99624 * 7 6 3 31 31 H 1.09003 * 109.46230 * 60.00126 * 9 8 7 32 32 H 1.08997 * 109.47275 * 300.00618 * 9 8 7 33 33 H 0.96998 * 119.99908 * 180.02562 * 14 13 11 34 34 H 1.08996 * 117.49905 * 215.00346 * 19 10 9 35 35 H 1.09000 * 117.49427 * 0.02562 * 19 10 9 36 36 H 1.09003 * 117.50629 * 359.97438 * 20 10 9 37 37 H 1.09006 * 117.49951 * 144.97781 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2542 0.8418 5 6 1.7427 2.4017 -1.3073 6 6 3.7370 1.9412 0.1256 7 6 4.1990 1.4191 1.4876 8 8 5.6139 1.5808 1.6048 9 6 6.1505 1.1224 2.8474 10 6 7.6644 1.3429 2.8616 11 6 8.4477 0.5394 1.8556 12 1 8.7057 0.9733 0.9009 13 6 8.8400 -0.7477 2.1564 14 7 8.4254 -1.3191 3.2661 15 14 9.9602 -1.6799 0.9879 16 1 11.3771 -1.4278 1.3537 17 1 9.6755 -3.1342 1.0838 18 1 9.7184 -1.2189 -0.4029 19 6 8.1705 2.7487 3.1911 20 6 8.3252 1.6198 4.2133 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 1.9875 3.4638 -1.3071 25 1 2.2354 1.9151 -2.1491 26 1 0.6635 2.2779 -1.3968 27 1 3.9902 2.9977 0.0365 28 1 4.2339 1.3805 -0.6660 29 1 3.9457 0.3627 1.5767 30 1 3.7020 1.9799 2.2793 31 1 5.9373 0.0599 2.9652 32 1 5.6943 1.6775 3.6670 33 1 8.7017 -2.2245 3.4779 34 1 9.0700 3.0923 2.6804 35 1 7.4249 3.5162 3.3982 36 1 7.6815 1.6454 5.0926 37 1 9.3265 1.2206 4.3753 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382958238.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:04 Heat of formation + Delta-G solvation = -55.814452 kcal Electronic energy + Delta-G solvation = -15686.175127 eV Core-core repulsion = 13168.537641 eV Total energy + Delta-G solvation = -2517.637486 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.34935 -37.68808 -35.81285 -33.98021 -30.84889 -29.35953 -27.94774 -26.84523 -24.20986 -22.89622 -22.46042 -21.03859 -18.20749 -17.72786 -17.10557 -16.81358 -16.45849 -15.98758 -15.77725 -15.15994 -14.74908 -14.53522 -14.23276 -13.85535 -13.68781 -13.37643 -13.14332 -12.88959 -12.82937 -12.54649 -12.36108 -12.18418 -12.10236 -12.04479 -11.90283 -11.34926 -10.89297 -10.67583 -10.43375 -10.32599 -9.97521 -8.68319 -8.10853 -6.19849 0.75121 1.40386 1.41273 1.51581 1.69673 2.43632 2.78638 3.18648 3.55756 3.82995 3.88653 4.13760 4.27860 4.33860 4.36136 4.39866 4.48198 4.52376 4.52937 4.59402 4.75685 4.82411 4.86521 4.88650 4.95248 4.99713 5.05964 5.14062 5.22886 5.25676 5.61853 5.63663 5.78624 6.39640 6.59579 6.84024 7.47169 8.98373 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.024362 B = 0.005364 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.045788 B = 5218.347920 C = 5745.294711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 S -0.332 6.332 3 C -0.035 4.035 4 H 0.101 0.899 5 C -0.141 4.141 6 C -0.091 4.091 7 C 0.056 3.944 8 O -0.395 6.395 9 C 0.124 3.876 10 C 0.005 3.995 11 C -0.500 4.500 12 H 0.045 0.955 13 C 0.023 3.977 14 N -0.910 5.910 15 Si 0.949 3.051 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.273 1.273 19 C -0.182 4.182 20 C -0.151 4.151 21 H 0.091 0.909 22 H 0.105 0.895 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.021 0.979 32 H 0.034 0.966 33 H 0.260 0.740 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.974 6.599 -5.341 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 S -0.107 6.107 3 C -0.164 4.164 4 H 0.119 0.881 5 C -0.200 4.200 6 C -0.130 4.130 7 C -0.021 4.021 8 O -0.315 6.315 9 C 0.047 3.953 10 C 0.005 3.995 11 C -0.538 4.538 12 H 0.064 0.936 13 C -0.176 4.176 14 N -0.548 5.548 15 Si 0.774 3.226 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.198 1.198 19 C -0.219 4.219 20 C -0.188 4.188 21 H 0.110 0.890 22 H 0.124 0.876 23 H 0.104 0.896 24 H 0.100 0.900 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.181 5.632 -5.377 17.062 hybrid contribution -0.168 -0.101 -0.075 0.210 sum -15.350 5.531 -5.452 17.203 Atomic orbital electron populations 1.23421 0.90954 1.07202 1.05950 1.87616 1.11025 1.14027 1.98039 1.23067 0.97903 0.92186 1.03220 0.88113 1.22042 1.01858 1.01532 0.94531 1.21290 0.92797 1.02917 0.95968 1.22614 0.81896 0.99529 0.98091 1.87870 1.21374 1.83930 1.38333 1.21827 0.93836 0.95819 0.83786 1.18926 0.90230 0.94469 0.95875 1.20605 1.33904 0.98457 1.00805 0.93645 1.25656 0.97179 0.98002 0.96803 1.70099 1.44917 1.14076 1.25716 0.85704 0.79576 0.77715 0.79580 1.19721 1.20847 1.19760 1.22952 1.02543 0.92094 1.04272 1.22447 1.00822 1.02709 0.92841 0.88985 0.87592 0.89555 0.90021 0.92013 0.90855 0.88594 0.92053 0.94431 0.92839 0.96111 0.94794 0.93110 0.90394 0.89091 0.90283 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.45 113.37 1.19 -0.47 16 2 S -0.33 -8.49 20.60 -56.49 -1.16 -9.65 16 3 C -0.04 -0.77 2.82 30.60 0.09 -0.68 16 4 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 5 C -0.14 -2.28 9.10 71.98 0.66 -1.62 16 6 C -0.09 -2.59 5.05 30.60 0.15 -2.43 16 7 C 0.06 1.98 5.77 71.98 0.42 2.39 16 8 O -0.40 -18.15 10.27 -148.98 -1.53 -19.68 16 9 C 0.12 6.03 5.76 71.98 0.41 6.45 16 10 C 0.01 0.28 1.60 -52.93 -0.08 0.20 16 11 C -0.50 -29.05 8.76 25.60 0.22 -28.83 16 12 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 13 C 0.02 1.34 5.39 84.65 0.46 1.79 16 14 N -0.91 -53.72 12.93 21.45 0.28 -53.45 16 15 Si 0.95 45.39 29.54 68.60 2.03 47.41 16 16 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 17 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 18 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 19 C -0.18 -8.10 9.96 30.62 0.30 -7.80 16 20 C -0.15 -7.23 9.43 30.61 0.29 -6.94 16 21 H 0.09 1.11 7.14 -2.39 -0.02 1.09 16 22 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.07 0.93 6.92 -2.39 -0.02 0.91 16 27 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.04 1.45 7.13 -2.39 -0.02 1.43 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.03 1.47 8.09 -2.39 -0.02 1.46 16 33 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 34 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 35 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 36 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 37 H 0.06 3.29 8.14 -2.38 -0.02 3.27 16 Total: -1.00 -65.70 320.02 4.72 -60.99 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.00 Total: 12.33 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 4.10 Total: -37.95 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.28 Total: -53.45 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -1.53 Total: -19.68 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -65.70 4.72 -60.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382958238.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.175 kcal (2) G-P(sol) polarization free energy of solvation -65.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds