Wall clock time and date at job start Mon Mar 30 2020 06:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86800 * 120.00065 * 2 1 4 4 H 1.48499 * 109.47348 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47348 * 300.00333 * 3 2 1 6 6 H 1.48501 * 109.46730 * 59.99916 * 3 2 1 7 7 C 1.39884 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99989 * 164.33127 * 7 2 1 9 9 C 1.41024 * 120.00175 * 344.32754 * 7 2 1 10 10 C 1.40672 * 120.26796 * 333.30007 * 9 7 2 11 11 C 1.37999 * 119.76957 * 180.25287 * 10 9 7 12 12 N 1.39857 * 119.84021 * 179.72411 * 11 10 9 13 13 C 1.46838 * 110.99780 * 357.99272 * 12 11 10 14 14 C 1.50140 * 110.28454 * 287.52503 * 13 12 11 15 15 C 1.29829 * 123.27989 * 342.98424 * 14 13 12 16 16 C 1.50306 * 122.89466 * 0.33392 * 15 14 13 17 17 C 1.47241 * 111.00193 * 235.06452 * 12 11 10 18 18 C 1.39604 * 120.32344 * 359.43016 * 11 10 9 19 19 C 1.38062 * 120.54537 * 0.59914 * 18 11 10 20 20 C 1.38740 * 120.22025 * 359.67967 * 19 18 11 21 21 N 1.38867 * 120.15911 * 180.02562 * 20 19 18 22 22 H 0.96997 * 119.99999 * 5.02245 * 1 2 3 23 23 H 1.08001 * 120.11478 * 359.97438 * 10 9 7 24 24 H 1.09009 * 109.33719 * 47.78610 * 13 12 11 25 25 H 1.09001 * 109.33535 * 167.29029 * 13 12 11 26 26 H 1.07991 * 118.36202 * 162.99331 * 14 13 12 27 27 H 1.07999 * 118.55198 * 180.35497 * 15 14 13 28 28 H 1.08998 * 109.43013 * 223.45169 * 16 15 14 29 29 H 1.09000 * 109.43047 * 103.60039 * 16 15 14 30 30 H 1.08990 * 109.63622 * 174.27713 * 17 12 11 31 31 H 1.09008 * 109.63493 * 294.68521 * 17 12 11 32 32 H 1.07998 * 119.73001 * 180.32346 * 18 11 10 33 33 H 1.08003 * 119.88873 * 179.70380 * 19 18 11 34 34 H 0.97000 * 119.99398 * 185.16088 * 21 20 19 35 35 H 0.96995 * 120.00131 * 5.16237 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7031 1.3464 0.0006 5 1 1.8843 2.3965 -1.2124 6 1 1.8842 2.3964 1.2125 7 6 2.0084 -1.2115 -0.0005 8 1 3.0583 -1.2287 -0.2532 9 6 1.3426 -2.4102 0.3288 10 6 0.2131 -2.3867 1.1669 11 6 -0.4274 -3.5664 1.4868 12 7 -1.5471 -3.5454 2.3246 13 6 -1.8359 -2.1805 2.7827 14 6 -0.8125 -1.7421 3.7900 15 6 -0.0280 -2.5672 4.4140 16 6 -0.0584 -4.0526 4.1865 17 6 -1.3595 -4.4402 3.4788 18 6 0.0331 -4.7802 0.9733 19 6 1.1407 -4.8187 0.1500 20 6 1.8054 -3.6468 -0.1816 21 7 2.9190 -3.6869 -1.0102 22 1 -0.4850 0.8368 -0.0735 23 1 -0.1489 -1.4491 1.5623 24 1 -1.8169 -1.5019 1.9298 25 1 -2.8254 -2.1549 3.2393 26 1 -0.7245 -0.6877 4.0063 27 1 0.6771 -2.1687 5.1284 28 1 0.0000 -4.5676 5.1453 29 1 0.7911 -4.3421 3.5679 30 1 -2.1975 -4.3308 4.1671 31 1 -1.2996 -5.4731 3.1356 32 1 -0.4786 -5.6971 1.2257 33 1 1.4907 -5.7641 -0.2374 34 1 3.4262 -2.8778 -1.1804 35 1 3.1896 -4.5240 -1.4188 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384654552.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:39 Heat of formation + Delta-G solvation = 52.312430 kcal Electronic energy + Delta-G solvation = -17988.834335 eV Core-core repulsion = 15372.734382 eV Total energy + Delta-G solvation = -2616.099953 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.64264 -36.96252 -33.56738 -33.19612 -31.20670 -30.72538 -29.24054 -26.80932 -25.12361 -23.46540 -22.66442 -20.84799 -19.67413 -17.79173 -16.61849 -16.17246 -15.58179 -15.43441 -14.72663 -14.29959 -14.17947 -13.49802 -12.95152 -12.69438 -12.57640 -12.00420 -11.80412 -11.60141 -11.46240 -11.34562 -11.14767 -10.96268 -10.74310 -10.47713 -10.35287 -9.79343 -9.41085 -9.22651 -9.05603 -8.44864 -7.79236 -7.24659 -6.61583 -5.88218 -4.08065 2.82492 2.86068 3.11516 3.15408 3.23071 3.27433 4.00869 4.66718 4.84321 5.33106 5.38259 5.52219 5.60864 5.74507 5.81933 6.01353 6.05876 6.23528 6.33985 6.39562 6.48669 6.57516 6.63041 7.06189 7.09486 7.16259 7.26424 7.32477 7.45949 7.59854 7.79854 7.82117 8.05285 8.37688 8.41241 8.69587 8.87669 8.93155 9.18091 9.26122 10.36553 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020408 B = 0.010567 C = 0.007917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.688230 B = 2649.032230 C = 3535.890379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.077 3.923 3 Si 0.901 3.099 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.070 0.930 9 C 0.074 3.926 10 C -0.167 4.167 11 C 0.069 3.931 12 N -0.480 5.480 13 C 0.075 3.925 14 C -0.170 4.170 15 C -0.157 4.157 16 C -0.120 4.120 17 C 0.059 3.941 18 C -0.200 4.200 19 C -0.171 4.171 20 C 0.105 3.895 21 N -0.887 5.887 22 H 0.275 0.725 23 H 0.135 0.865 24 H 0.103 0.897 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.389 0.611 35 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.375 -2.915 5.193 5.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.495 4.495 8 H 0.088 0.912 9 C 0.069 3.931 10 C -0.189 4.189 11 C -0.027 4.027 12 N -0.195 5.195 13 C -0.052 4.052 14 C -0.189 4.189 15 C -0.175 4.175 16 C -0.158 4.158 17 C -0.068 4.068 18 C -0.222 4.222 19 C -0.195 4.195 20 C 0.004 3.996 21 N -0.429 5.429 22 H 0.086 0.914 23 H 0.153 0.847 24 H 0.121 0.879 25 H 0.091 0.909 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.218 0.782 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.107 -2.907 5.050 5.931 hybrid contribution 1.405 1.172 0.088 1.832 sum 0.299 -1.734 5.138 5.431 Atomic orbital electron populations 1.69825 1.07185 1.28437 1.37766 1.25714 0.94696 1.00539 0.92919 0.86388 0.80824 0.81827 0.78343 1.18807 1.20270 1.20039 1.19126 0.96816 0.90928 1.42645 0.91214 1.17117 0.93457 0.90259 0.92302 1.21356 0.98816 0.96451 1.02313 1.18438 0.91302 0.94442 0.98543 1.60080 1.36502 1.07788 1.15115 1.21159 0.96036 0.90668 0.97345 1.22689 0.98888 0.99207 0.98138 1.21934 0.99531 0.95364 1.00685 1.21004 1.00506 0.93927 1.00411 1.22230 0.95757 0.97350 0.91465 1.19709 1.00595 0.94875 1.06980 1.19818 0.99720 0.94745 1.05217 1.17989 0.91381 0.93975 0.96235 1.41875 1.32711 1.11643 1.56626 0.91419 0.84749 0.87933 0.90906 0.88184 0.88600 0.91854 0.89929 0.91596 0.90680 0.89424 0.89555 0.78237 0.79958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.78 10.97 55.55 0.61 -20.17 16 2 C 0.08 1.92 5.17 -17.33 -0.09 1.84 16 3 Si 0.90 18.95 29.59 -169.99 -5.03 13.92 16 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 7 C -0.46 -12.11 8.51 -37.91 -0.32 -12.43 16 8 H 0.07 1.74 6.66 -52.49 -0.35 1.39 16 9 C 0.07 1.95 5.57 -106.66 -0.59 1.35 16 10 C -0.17 -4.25 6.73 -38.75 -0.26 -4.51 16 11 C 0.07 1.60 4.08 -83.77 -0.34 1.26 16 12 N -0.48 -9.77 5.09 -172.52 -0.88 -10.65 16 13 C 0.08 1.45 5.50 -5.28 -0.03 1.42 16 14 C -0.17 -3.14 8.02 -35.97 -0.29 -3.43 16 15 C -0.16 -2.79 9.61 -35.89 -0.34 -3.13 16 16 C -0.12 -2.04 5.64 -28.03 -0.16 -2.20 16 17 C 0.06 1.00 5.68 -3.59 -0.02 0.98 16 18 C -0.20 -4.53 8.86 -39.14 -0.35 -4.88 16 19 C -0.17 -3.89 9.87 -39.46 -0.39 -4.28 16 20 C 0.11 2.54 6.79 -83.22 -0.56 1.97 16 21 N -0.89 -18.02 8.97 32.75 0.29 -17.72 16 22 H 0.27 6.53 8.30 -40.82 -0.34 6.19 16 23 H 0.14 3.47 3.17 -52.49 -0.17 3.31 16 24 H 0.10 2.22 6.40 -51.92 -0.33 1.89 16 25 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 27 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.60 7.17 -51.93 -0.37 1.23 16 30 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 31 H 0.07 1.23 7.10 -51.92 -0.37 0.86 16 32 H 0.09 1.82 7.20 -52.49 -0.38 1.45 16 33 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 34 H 0.39 7.76 7.05 -40.82 -0.29 7.48 16 35 H 0.38 6.44 8.84 -40.82 -0.36 6.08 16 LS Contribution 276.38 15.07 4.16 4.16 Total: -1.00 -27.90 276.38 -8.87 -36.77 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -4.28 Total: 19.72 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -3.75 Total: -26.04 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.02 Total: -48.54 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.90 -8.87 -36.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384654552.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.086 kcal (2) G-P(sol) polarization free energy of solvation -27.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds