Wall clock time and date at job start Mon Mar 30 2020 06:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86800 * 120.00065 * 2 1 4 4 H 1.48499 * 109.47348 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47348 * 300.00333 * 3 2 1 6 6 H 1.48501 * 109.46730 * 59.99916 * 3 2 1 7 7 C 1.39884 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99989 * 164.33127 * 7 2 1 9 9 C 1.41024 * 120.00175 * 344.32754 * 7 2 1 10 10 C 1.40672 * 120.26796 * 333.30007 * 9 7 2 11 11 C 1.37999 * 119.76957 * 180.25287 * 10 9 7 12 12 N 1.39857 * 119.84021 * 179.72411 * 11 10 9 13 13 C 1.46838 * 110.99780 * 357.99272 * 12 11 10 14 14 C 1.50140 * 110.28454 * 287.52503 * 13 12 11 15 15 C 1.29829 * 123.27989 * 342.98424 * 14 13 12 16 16 C 1.50306 * 122.89466 * 0.33392 * 15 14 13 17 17 C 1.47241 * 111.00193 * 235.06452 * 12 11 10 18 18 C 1.39604 * 120.32344 * 359.43016 * 11 10 9 19 19 C 1.38062 * 120.54537 * 0.59914 * 18 11 10 20 20 C 1.38740 * 120.22025 * 359.67967 * 19 18 11 21 21 N 1.38867 * 120.15911 * 180.02562 * 20 19 18 22 22 H 0.96997 * 119.99999 * 5.02245 * 1 2 3 23 23 H 1.08001 * 120.11478 * 359.97438 * 10 9 7 24 24 H 1.09009 * 109.33719 * 47.78610 * 13 12 11 25 25 H 1.09001 * 109.33535 * 167.29029 * 13 12 11 26 26 H 1.07991 * 118.36202 * 162.99331 * 14 13 12 27 27 H 1.07999 * 118.55198 * 180.35497 * 15 14 13 28 28 H 1.08998 * 109.43013 * 223.45169 * 16 15 14 29 29 H 1.09000 * 109.43047 * 103.60039 * 16 15 14 30 30 H 1.08990 * 109.63622 * 174.27713 * 17 12 11 31 31 H 1.09008 * 109.63493 * 294.68521 * 17 12 11 32 32 H 1.07998 * 119.73001 * 180.32346 * 18 11 10 33 33 H 1.08003 * 119.88873 * 179.70380 * 19 18 11 34 34 H 0.97000 * 119.99398 * 185.16088 * 21 20 19 35 35 H 0.96995 * 120.00131 * 5.16237 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7031 1.3464 0.0006 5 1 1.8843 2.3965 -1.2124 6 1 1.8842 2.3964 1.2125 7 6 2.0084 -1.2115 -0.0005 8 1 3.0583 -1.2287 -0.2532 9 6 1.3426 -2.4102 0.3288 10 6 0.2131 -2.3867 1.1669 11 6 -0.4274 -3.5664 1.4868 12 7 -1.5471 -3.5454 2.3246 13 6 -1.8359 -2.1805 2.7827 14 6 -0.8125 -1.7421 3.7900 15 6 -0.0280 -2.5672 4.4140 16 6 -0.0584 -4.0526 4.1865 17 6 -1.3595 -4.4402 3.4788 18 6 0.0331 -4.7802 0.9733 19 6 1.1407 -4.8187 0.1500 20 6 1.8054 -3.6468 -0.1816 21 7 2.9190 -3.6869 -1.0102 22 1 -0.4850 0.8368 -0.0735 23 1 -0.1489 -1.4491 1.5623 24 1 -1.8169 -1.5019 1.9298 25 1 -2.8254 -2.1549 3.2393 26 1 -0.7245 -0.6877 4.0063 27 1 0.6771 -2.1687 5.1284 28 1 0.0000 -4.5676 5.1453 29 1 0.7911 -4.3421 3.5679 30 1 -2.1975 -4.3308 4.1671 31 1 -1.2996 -5.4731 3.1356 32 1 -0.4786 -5.6971 1.2257 33 1 1.4907 -5.7641 -0.2374 34 1 3.4262 -2.8778 -1.1804 35 1 3.1896 -4.5240 -1.4188 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384654552.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:38 Heat of formation + Delta-G solvation = 35.214654 kcal Electronic energy + Delta-G solvation = -17989.575750 eV Core-core repulsion = 15372.734382 eV Total energy + Delta-G solvation = -2616.841368 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.22426 -38.67447 -35.40947 -34.82207 -32.78760 -32.22840 -31.02352 -28.51910 -26.93350 -25.04951 -24.13201 -22.63094 -21.37822 -19.45544 -18.32350 -17.81076 -17.28835 -17.01425 -16.46201 -15.86301 -15.70159 -15.06514 -14.54447 -14.40778 -14.24366 -13.62632 -13.39216 -13.22196 -13.10382 -12.96733 -12.79855 -12.62827 -12.31333 -12.03652 -12.01416 -11.49417 -11.14624 -10.97529 -10.85430 -9.88931 -9.39400 -9.11390 -8.47298 -7.62821 -5.99331 1.09574 1.37215 1.39360 1.44690 1.51121 1.54102 2.25542 2.86851 3.25433 3.70602 3.87711 4.02848 4.10497 4.26762 4.40168 4.59179 4.66275 4.72796 4.80077 4.86040 4.97267 5.02094 5.17025 5.25970 5.40469 5.46308 5.56571 5.70919 5.85220 5.99056 6.03992 6.10958 6.24661 6.53268 6.65496 6.94648 7.01722 7.09701 7.40504 7.60717 8.52642 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020408 B = 0.010567 C = 0.007917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.688230 B = 2649.032230 C = 3535.890379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.036 3.964 3 Si 0.969 3.031 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.491 4.491 8 H 0.070 0.930 9 C 0.035 3.965 10 C -0.184 4.184 11 C 0.067 3.933 12 N -0.488 5.488 13 C 0.079 3.921 14 C -0.183 4.183 15 C -0.158 4.158 16 C -0.117 4.117 17 C 0.058 3.942 18 C -0.201 4.201 19 C -0.178 4.178 20 C 0.091 3.909 21 N -0.877 5.877 22 H 0.279 0.721 23 H 0.125 0.875 24 H 0.070 0.930 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.391 0.609 35 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.270 -3.689 6.065 7.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.176 4.176 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.523 4.523 8 H 0.088 0.912 9 C 0.030 3.970 10 C -0.207 4.207 11 C -0.030 4.030 12 N -0.204 5.204 13 C -0.048 4.048 14 C -0.203 4.203 15 C -0.177 4.177 16 C -0.155 4.155 17 C -0.068 4.068 18 C -0.223 4.223 19 C -0.202 4.202 20 C -0.011 4.011 21 N -0.420 5.420 22 H 0.089 0.911 23 H 0.142 0.858 24 H 0.088 0.912 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.115 0.885 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.219 0.781 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.992 -3.709 5.916 7.053 hybrid contribution 1.320 1.295 -0.159 1.856 sum 0.329 -2.414 5.757 6.251 Atomic orbital electron populations 1.69906 1.08452 1.29373 1.38646 1.26454 0.95419 1.03461 0.92310 0.85356 0.79495 0.77633 0.78365 1.18446 1.19665 1.19766 1.19341 0.96999 0.91871 1.44078 0.91196 1.17524 0.94551 0.91423 0.93519 1.21413 0.99324 0.97021 1.02967 1.18585 0.91640 0.93955 0.98818 1.60066 1.35071 1.08788 1.16453 1.21076 0.97654 0.89654 0.96429 1.22697 0.99585 0.99562 0.98436 1.22197 0.99016 0.95992 1.00450 1.20991 0.99337 0.93535 1.01600 1.22373 0.96790 0.96953 0.90696 1.20032 1.00485 0.95451 1.06307 1.20148 0.99594 0.95427 1.05012 1.18189 0.92361 0.93828 0.96703 1.41766 1.31684 1.12593 1.55968 0.91064 0.85766 0.91207 0.88345 0.88062 0.87310 0.88502 0.92479 0.89066 0.89760 0.87360 0.86951 0.78133 0.78077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.32 10.97 21.82 0.24 -44.08 16 2 C 0.04 1.83 5.17 85.23 0.44 2.27 16 3 Si 0.97 39.35 29.59 68.60 2.03 41.38 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.49 -26.19 8.51 23.35 0.20 -25.99 16 8 H 0.07 3.56 6.66 -2.91 -0.02 3.55 16 9 C 0.04 1.88 5.57 -21.18 -0.12 1.76 16 10 C -0.18 -9.58 6.73 22.81 0.15 -9.43 16 11 C 0.07 3.09 4.08 38.13 0.16 3.25 16 12 N -0.49 -19.34 5.09 -699.72 -3.56 -22.91 16 13 C 0.08 3.01 5.50 85.39 0.47 3.48 16 14 C -0.18 -6.69 8.02 26.68 0.21 -6.48 16 15 C -0.16 -5.41 9.61 26.73 0.26 -5.15 16 16 C -0.12 -3.70 5.64 29.76 0.17 -3.53 16 17 C 0.06 1.82 5.68 86.27 0.49 2.31 16 18 C -0.20 -8.86 8.86 22.56 0.20 -8.66 16 19 C -0.18 -7.86 9.87 22.35 0.22 -7.64 16 20 C 0.09 4.39 6.79 38.97 0.26 4.65 16 21 N -0.88 -35.11 8.97 -50.31 -0.45 -35.56 16 22 H 0.28 13.61 8.30 -92.71 -0.77 12.84 16 23 H 0.12 6.64 3.17 -2.91 -0.01 6.63 16 24 H 0.07 3.12 6.40 -2.38 -0.02 3.11 16 25 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 26 H 0.10 3.58 8.06 -2.92 -0.02 3.56 16 27 H 0.11 3.38 8.06 -2.91 -0.02 3.36 16 28 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.06 2.14 7.17 -2.39 -0.02 2.12 16 30 H 0.09 2.43 8.08 -2.39 -0.02 2.41 16 31 H 0.08 2.50 7.10 -2.38 -0.02 2.48 16 32 H 0.11 4.24 7.20 -2.91 -0.02 4.22 16 33 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 34 H 0.39 15.52 7.05 -92.71 -0.65 14.86 16 35 H 0.39 12.88 8.84 -92.71 -0.82 12.06 16 Total: -1.00 -60.07 276.38 1.02 -59.05 By element: Atomic # 1 Polarization: 51.63 SS G_CDS: -0.35 Total: 51.28 kcal Atomic # 6 Polarization: -52.27 SS G_CDS: 3.11 Total: -49.15 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -3.78 Total: -102.56 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -60.07 1.02 -59.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384654552.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.264 kcal (2) G-P(sol) polarization free energy of solvation -60.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds