Wall clock time and date at job start Mon Mar 30 2020 05:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.87241 * 2 1 4 4 O 1.43749 * 110.00170 * 121.08905 * 2 1 3 5 5 C 1.44378 * 106.97548 * 92.98182 * 4 2 1 6 6 C 1.54994 * 103.49107 * 40.05630 * 5 4 2 7 7 C 1.54104 * 109.87555 * 238.99360 * 2 1 3 8 8 H 1.08993 * 110.48779 * 1.13327 * 7 2 1 9 9 S 1.81398 * 110.48393 * 123.65090 * 7 2 1 10 10 C 1.81404 * 102.99788 * 184.99901 * 9 7 2 11 11 C 1.52992 * 109.47318 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47411 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.47429 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47071 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99944 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99772 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99769 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99955 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46982 * 90.00221 * 18 16 14 20 20 H 1.48501 * 109.47406 * 209.99940 * 18 16 14 21 21 H 1.48501 * 109.47167 * 329.99935 * 18 16 14 22 22 H 1.08994 * 109.47317 * 180.70118 * 1 2 3 23 23 H 1.09001 * 109.47008 * 300.69919 * 1 2 3 24 24 H 1.08998 * 109.47226 * 60.69903 * 1 2 3 25 25 H 1.09006 * 110.61702 * 281.55715 * 5 4 2 26 26 H 1.09000 * 110.75620 * 158.62542 * 5 4 2 27 27 H 1.09003 * 110.91029 * 204.78048 * 6 5 4 28 28 H 1.08996 * 110.93664 * 81.19029 * 6 5 4 29 29 H 1.09000 * 109.47065 * 300.00175 * 10 9 7 30 30 H 1.09000 * 109.47161 * 59.99396 * 10 9 7 31 31 H 1.09008 * 109.46999 * 299.99746 * 11 10 9 32 32 H 1.09000 * 109.47532 * 59.99581 * 11 10 9 33 33 H 1.08994 * 109.46831 * 299.99736 * 12 11 10 34 34 H 1.09000 * 109.47649 * 59.99511 * 12 11 10 35 35 H 1.08995 * 109.46811 * 300.00219 * 13 12 11 36 36 H 1.09004 * 109.46336 * 59.99997 * 13 12 11 37 37 H 0.97001 * 119.99241 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0217 -0.6975 1.1568 5 6 2.2334 -2.0703 0.7629 6 6 2.8356 -1.9494 -0.6602 7 6 2.0539 -0.7466 -1.2422 8 1 1.2236 -1.0928 -1.8575 9 16 3.1553 0.3232 -2.2081 10 6 3.5221 -0.6840 -3.6716 11 6 4.4572 0.0905 -4.6024 12 6 4.7661 -0.7588 -5.8370 13 6 5.7008 0.0160 -6.7683 14 6 6.0055 -0.8208 -7.9840 15 1 5.5758 -1.8067 -8.0824 16 6 6.8336 -0.3280 -8.9701 17 7 7.3579 0.8720 -8.8495 18 14 7.2119 -1.3655 -10.4767 19 1 6.2039 -1.0913 -11.5322 20 1 8.5653 -1.0258 -10.9846 21 1 7.1671 -2.8041 -10.1110 22 1 -0.3633 -1.0275 0.0126 23 1 -0.3633 0.5247 0.8837 24 1 -0.3633 0.5029 -0.8962 25 1 1.2877 -2.6117 0.7347 26 1 2.9356 -2.5615 1.4364 27 1 2.6475 -2.8529 -1.2403 28 1 3.9031 -1.7341 -0.6143 29 1 4.0040 -1.6116 -3.3627 30 1 2.5947 -0.9136 -4.1963 31 1 3.9756 1.0183 -4.9114 32 1 5.3845 0.3198 -4.0774 33 1 5.2474 -1.6867 -5.5285 34 1 3.8387 -0.9877 -6.3620 35 1 5.2190 0.9438 -7.0767 36 1 6.6283 0.2451 -6.2435 37 1 7.9402 1.2188 -9.5434 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385197233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:37 Heat of formation + Delta-G solvation = -97.083261 kcal Electronic energy + Delta-G solvation = -15094.174182 eV Core-core repulsion = 12574.747146 eV Total energy + Delta-G solvation = -2519.427036 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.51761 -36.89757 -34.67556 -33.42377 -32.27076 -31.25810 -27.48809 -27.07061 -23.87844 -22.85415 -22.20759 -21.66065 -18.46250 -18.16688 -17.32254 -16.79292 -16.54046 -16.46492 -15.50764 -15.15688 -14.62504 -14.43835 -14.33428 -14.01279 -13.69600 -13.63951 -13.12459 -12.92156 -12.88575 -12.61202 -12.38257 -12.36451 -12.20142 -12.02323 -11.82444 -11.45442 -11.34210 -11.00970 -10.87478 -10.65472 -10.56133 -8.72747 -8.20381 -6.32171 0.59400 1.39957 1.41625 1.52694 1.54887 2.40866 2.85084 3.12652 3.34457 3.68758 3.90091 3.94027 4.00011 4.09077 4.21408 4.30492 4.41358 4.49903 4.51642 4.61953 4.71033 4.78878 4.80933 4.86188 5.00151 5.05382 5.08328 5.21626 5.24595 5.25897 5.52290 5.74301 5.85285 5.85379 6.23819 6.85599 7.37427 8.91619 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.061668 B = 0.003296 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.937274 B = 8492.913141 C = 8647.160925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.094 3.906 3 H 0.086 0.914 4 O -0.390 6.390 5 C 0.047 3.953 6 C -0.151 4.151 7 C -0.081 4.081 8 H 0.113 0.887 9 S -0.289 6.289 10 C -0.065 4.065 11 C -0.095 4.095 12 C -0.091 4.091 13 C 0.021 3.979 14 C -0.544 4.544 15 H 0.063 0.937 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.261 1.261 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.057 0.943 35 H -0.011 1.011 36 H -0.011 1.011 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.996 -6.814 17.984 23.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.035 3.965 3 H 0.104 0.896 4 O -0.309 6.309 5 C -0.030 4.030 6 C -0.190 4.190 7 C -0.210 4.210 8 H 0.132 0.868 9 S -0.059 6.059 10 C -0.213 4.213 11 C -0.133 4.133 12 C -0.130 4.130 13 C -0.016 4.016 14 C -0.582 4.582 15 H 0.081 0.919 16 C -0.201 4.201 17 N -0.576 5.576 18 Si 0.791 3.209 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.185 1.185 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.008 0.992 36 H 0.007 0.993 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.499 -5.565 18.356 23.455 hybrid contribution 0.159 -1.178 -1.471 1.891 sum -13.340 -6.743 16.885 22.551 Atomic orbital electron populations 1.22226 0.92838 1.03479 1.03459 1.22534 0.95236 0.96176 0.82555 0.89624 1.88909 1.86285 1.22348 1.33384 1.23716 1.01076 0.83434 0.94775 1.23584 1.00573 0.97578 0.97271 1.24681 0.99527 0.97726 0.99099 0.86849 1.87148 1.63931 1.30714 1.24112 1.23332 1.03095 1.00191 0.94721 1.21246 0.98389 0.98558 0.95139 1.21415 0.99136 0.98125 0.94339 1.19034 0.93811 0.94877 0.93880 1.21736 1.28740 1.02524 1.05223 0.91900 1.26041 0.95707 0.96349 1.02036 1.70114 1.33324 1.18556 1.35568 0.85416 0.77496 0.79185 0.78765 1.19709 1.20833 1.18522 0.91128 0.91158 0.90472 0.90238 0.87448 0.88004 0.90322 0.89112 0.89055 0.92443 0.92539 0.92489 0.92434 0.99231 0.99268 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.31 71.98 0.67 -1.59 16 2 C 0.09 1.78 3.78 30.97 0.12 1.89 16 3 H 0.09 1.87 7.62 -2.39 -0.02 1.85 16 4 O -0.39 -8.16 11.20 -148.98 -1.67 -9.82 16 5 C 0.05 0.68 7.67 72.66 0.56 1.24 16 6 C -0.15 -2.42 6.69 31.89 0.21 -2.21 16 7 C -0.08 -1.51 3.17 31.59 0.10 -1.41 16 8 H 0.11 1.80 7.69 -2.39 -0.02 1.78 16 9 S -0.29 -7.45 20.77 -56.49 -1.17 -8.62 16 10 C -0.07 -1.71 5.90 71.98 0.42 -1.28 16 11 C -0.09 -3.22 5.22 30.59 0.16 -3.06 16 12 C -0.09 -3.65 5.15 30.60 0.16 -3.50 16 13 C 0.02 1.14 4.97 29.85 0.15 1.29 16 14 C -0.54 -31.24 9.11 25.60 0.23 -31.01 16 15 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 16 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 17 N -0.94 -57.87 13.29 21.45 0.28 -57.59 16 18 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 22 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 1.51 7.84 -2.39 -0.02 1.49 16 29 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 35 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 36 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 37 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -66.27 315.73 3.71 -62.56 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 1.00 Total: 6.47 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: 3.24 Total: -39.40 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.28 Total: -57.59 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -1.67 Total: -9.82 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: -7.45 SS G_CDS: -1.17 Total: -8.62 kcal Total: -66.27 3.71 -62.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385197233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.525 kcal (2) G-P(sol) polarization free energy of solvation -66.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds