Wall clock time and date at job start Mon Mar 30 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.87194 * 2 1 4 4 O 1.43741 * 109.88299 * 238.83798 * 2 1 3 5 5 C 1.44376 * 106.97562 * 214.06602 * 4 2 1 6 6 C 1.54993 * 103.49545 * 40.06002 * 5 4 2 7 7 C 1.54103 * 109.88006 * 121.00486 * 2 1 3 8 8 H 1.09000 * 110.49050 * 240.26533 * 7 2 1 9 9 S 1.81404 * 110.48449 * 2.77890 * 7 2 1 10 10 C 1.81403 * 102.99798 * 184.99984 * 9 7 2 11 11 C 1.53003 * 109.46784 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46986 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47355 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47168 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99902 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99854 * 179.72538 * 16 14 13 19 19 H 1.48498 * 109.47200 * 59.99994 * 18 16 14 20 20 H 1.48498 * 109.46671 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47156 * 300.00008 * 18 16 14 22 22 H 1.08998 * 109.46953 * 298.99793 * 1 2 3 23 23 H 1.09001 * 109.47142 * 58.99322 * 1 2 3 24 24 H 1.08991 * 109.47412 * 178.99128 * 1 2 3 25 25 H 1.09004 * 110.61796 * 158.55884 * 5 4 2 26 26 H 1.08994 * 110.61897 * 281.39427 * 5 4 2 27 27 H 1.09000 * 110.90704 * 204.78228 * 6 5 4 28 28 H 1.08996 * 110.91022 * 81.16929 * 6 5 4 29 29 H 1.08998 * 109.47334 * 60.00258 * 10 9 7 30 30 H 1.09002 * 109.46959 * 299.99736 * 10 9 7 31 31 H 1.09000 * 109.47521 * 60.00094 * 11 10 9 32 32 H 1.09002 * 109.47113 * 299.99588 * 11 10 9 33 33 H 1.09000 * 109.46966 * 59.99691 * 12 11 10 34 34 H 1.09002 * 109.46807 * 299.99713 * 12 11 10 35 35 H 1.08998 * 109.46837 * 59.99832 * 13 12 11 36 36 H 1.09002 * 109.46926 * 299.99636 * 13 12 11 37 37 H 0.97001 * 119.99646 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0189 -0.6995 -1.1567 5 6 3.2379 -1.3651 -0.7627 6 6 2.9195 -1.8906 0.6602 7 6 2.0540 -0.7465 1.2421 8 1 2.6600 -0.0827 1.8588 9 16 0.6737 -1.4219 2.2061 10 6 1.4959 -2.1089 3.6699 11 6 0.4497 -2.7277 4.5991 12 6 1.1431 -3.3066 5.8341 13 6 0.0970 -3.9260 6.7630 14 6 0.7800 -4.4967 7.9790 15 1 1.8530 -4.4252 8.0792 16 6 0.0351 -5.1101 8.9639 17 7 -1.2714 -5.1977 8.8417 18 14 0.8826 -5.8243 10.4676 19 1 1.6082 -4.7459 11.1858 20 1 -0.1330 -6.4232 11.3704 21 1 1.8463 -6.8710 10.0423 22 1 -0.3633 0.4982 0.8988 23 1 -0.3633 0.5294 -0.8808 24 1 -0.3634 -1.0274 -0.0181 25 1 3.4585 -2.1927 -1.4370 26 1 4.0691 -0.6605 -0.7373 27 1 3.8331 -2.0207 1.2403 28 1 2.3539 -2.8211 0.6138 29 1 2.0250 -1.3143 4.1960 30 1 2.2063 -2.8759 3.3612 31 1 -0.0790 -3.5225 4.0729 32 1 -0.2609 -1.9610 4.9079 33 1 1.6715 -2.5115 6.3601 34 1 1.8540 -4.0732 5.5257 35 1 -0.4310 -4.7211 6.2366 36 1 -0.6142 -3.1597 7.0714 37 1 -1.7955 -5.6289 9.5348 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385197234.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:39 Heat of formation + Delta-G solvation = -77.800027 kcal Electronic energy + Delta-G solvation = -15180.306948 eV Core-core repulsion = 12661.716096 eV Total energy + Delta-G solvation = -2518.590852 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.67763 -35.20009 -32.67295 -32.66970 -31.77329 -29.44575 -26.34301 -25.14852 -22.52495 -22.09649 -21.21926 -20.07513 -17.01226 -16.47910 -16.17790 -15.93471 -15.25109 -15.07189 -14.47886 -14.12303 -13.65436 -13.05091 -12.83261 -12.69275 -12.49485 -12.28301 -12.01617 -11.62750 -11.44675 -11.23965 -11.15623 -11.05291 -10.65331 -10.52532 -10.48517 -10.00594 -9.70022 -9.68799 -9.28502 -9.02690 -8.33984 -7.62813 -5.98970 -4.01671 1.60313 2.59228 3.33244 3.37688 3.39985 3.55005 4.09986 4.45824 4.46189 4.72211 4.75534 4.89519 5.11735 5.17747 5.22559 5.25016 5.34859 5.36489 5.41777 5.62970 5.73197 5.75577 5.78841 6.00117 6.10403 6.13725 6.41791 6.59571 6.72277 6.87692 7.11743 7.68316 7.83354 8.01184 8.43378 9.05360 9.62188 11.12313 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.059884 B = 0.003425 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.457495 B = 8172.878438 C = 8482.114198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 H 0.075 0.925 4 O -0.370 6.370 5 C 0.049 3.951 6 C -0.151 4.151 7 C -0.099 4.099 8 H 0.096 0.904 9 S -0.228 6.228 10 C -0.094 4.094 11 C -0.102 4.102 12 C -0.104 4.104 13 C 0.021 3.979 14 C -0.522 4.522 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.083 0.917 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.704 9.880 -17.982 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.039 3.961 3 H 0.093 0.907 4 O -0.290 6.290 5 C -0.028 4.028 6 C -0.190 4.190 7 C -0.229 4.229 8 H 0.115 0.885 9 S 0.002 5.998 10 C -0.242 4.242 11 C -0.140 4.140 12 C -0.144 4.144 13 C -0.016 4.016 14 C -0.561 4.561 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.101 0.899 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.114 0.886 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.350 9.828 -18.334 21.750 hybrid contribution 1.936 -0.423 1.505 2.489 sum 8.286 9.405 -16.829 20.984 Atomic orbital electron populations 1.21865 0.92893 1.04208 1.02750 1.22514 0.95984 0.94831 0.82762 0.90678 1.88908 1.39656 1.67670 1.32746 1.23514 0.87639 0.96492 0.95184 1.23582 1.00289 0.98694 0.96461 1.24633 0.98688 0.99811 0.99741 0.88543 1.87085 1.14956 1.75137 1.22607 1.23668 1.01836 1.02432 0.96224 1.21429 0.96733 1.00134 0.95753 1.21637 0.99543 0.98972 0.94208 1.19095 0.93616 0.95644 0.93259 1.21228 0.93526 1.36980 1.04327 0.92805 1.25036 0.94840 0.96203 0.98405 1.69959 1.04972 1.44137 1.34394 0.86659 0.79183 0.79404 0.82759 1.20263 1.21263 1.20252 0.89859 0.91635 0.90529 0.88647 0.92121 0.89906 0.88905 0.90593 0.90555 0.91584 0.91594 0.93362 0.93367 0.96554 0.96553 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 8.29 37.16 0.31 -1.31 16 2 C 0.10 0.99 4.06 -26.16 -0.11 0.88 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 4 O -0.37 -4.15 11.19 -35.23 -0.39 -4.54 16 5 C 0.05 0.42 7.72 38.21 0.29 0.71 16 6 C -0.15 -1.38 6.68 -24.72 -0.17 -1.55 16 7 C -0.10 -1.02 3.54 -25.20 -0.09 -1.11 16 8 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 9 S -0.23 -2.94 17.80 -107.50 -1.91 -4.85 16 10 C -0.09 -1.30 5.90 37.16 0.22 -1.08 16 11 C -0.10 -1.74 5.22 -26.73 -0.14 -1.88 16 12 C -0.10 -2.13 5.15 -26.73 -0.14 -2.27 16 13 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 14 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 18 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H 0.08 0.84 7.38 -51.93 -0.38 0.45 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 0.89 7.16 -51.93 -0.37 0.52 16 25 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 0.96 7.83 -51.93 -0.41 0.55 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 311.66 15.07 4.70 4.70 Total: -1.00 -30.53 311.66 -8.88 -39.42 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -6.62 Total: -4.06 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -0.37 Total: -20.93 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.74 Total: -26.49 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.39 Total: -4.54 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -2.94 SS G_CDS: -1.91 Total: -4.85 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.53 -8.88 -39.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385197234.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.384 kcal (2) G-P(sol) polarization free energy of solvation -30.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds