Wall clock time and date at job start Mon Mar 30 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.87194 * 2 1 4 4 O 1.43741 * 109.88299 * 238.83798 * 2 1 3 5 5 C 1.44376 * 106.97562 * 214.06602 * 4 2 1 6 6 C 1.54993 * 103.49545 * 40.06002 * 5 4 2 7 7 C 1.54103 * 109.88006 * 121.00486 * 2 1 3 8 8 H 1.09000 * 110.49050 * 240.26533 * 7 2 1 9 9 S 1.81404 * 110.48449 * 2.77890 * 7 2 1 10 10 C 1.81403 * 102.99798 * 184.99984 * 9 7 2 11 11 C 1.53003 * 109.46784 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46986 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47355 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47168 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99902 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99854 * 179.72538 * 16 14 13 19 19 H 1.48498 * 109.47200 * 59.99994 * 18 16 14 20 20 H 1.48498 * 109.46671 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47156 * 300.00008 * 18 16 14 22 22 H 1.08998 * 109.46953 * 298.99793 * 1 2 3 23 23 H 1.09001 * 109.47142 * 58.99322 * 1 2 3 24 24 H 1.08991 * 109.47412 * 178.99128 * 1 2 3 25 25 H 1.09004 * 110.61796 * 158.55884 * 5 4 2 26 26 H 1.08994 * 110.61897 * 281.39427 * 5 4 2 27 27 H 1.09000 * 110.90704 * 204.78228 * 6 5 4 28 28 H 1.08996 * 110.91022 * 81.16929 * 6 5 4 29 29 H 1.08998 * 109.47334 * 60.00258 * 10 9 7 30 30 H 1.09002 * 109.46959 * 299.99736 * 10 9 7 31 31 H 1.09000 * 109.47521 * 60.00094 * 11 10 9 32 32 H 1.09002 * 109.47113 * 299.99588 * 11 10 9 33 33 H 1.09000 * 109.46966 * 59.99691 * 12 11 10 34 34 H 1.09002 * 109.46807 * 299.99713 * 12 11 10 35 35 H 1.08998 * 109.46837 * 59.99832 * 13 12 11 36 36 H 1.09002 * 109.46926 * 299.99636 * 13 12 11 37 37 H 0.97001 * 119.99646 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0189 -0.6995 -1.1567 5 6 3.2379 -1.3651 -0.7627 6 6 2.9195 -1.8906 0.6602 7 6 2.0540 -0.7465 1.2421 8 1 2.6600 -0.0827 1.8588 9 16 0.6737 -1.4219 2.2061 10 6 1.4959 -2.1089 3.6699 11 6 0.4497 -2.7277 4.5991 12 6 1.1431 -3.3066 5.8341 13 6 0.0970 -3.9260 6.7630 14 6 0.7800 -4.4967 7.9790 15 1 1.8530 -4.4252 8.0792 16 6 0.0351 -5.1101 8.9639 17 7 -1.2714 -5.1977 8.8417 18 14 0.8826 -5.8243 10.4676 19 1 1.6082 -4.7459 11.1858 20 1 -0.1330 -6.4232 11.3704 21 1 1.8463 -6.8710 10.0423 22 1 -0.3633 0.4982 0.8988 23 1 -0.3633 0.5294 -0.8808 24 1 -0.3634 -1.0274 -0.0181 25 1 3.4585 -2.1927 -1.4370 26 1 4.0691 -0.6605 -0.7373 27 1 3.8331 -2.0207 1.2403 28 1 2.3539 -2.8211 0.6138 29 1 2.0250 -1.3143 4.1960 30 1 2.2063 -2.8759 3.3612 31 1 -0.0790 -3.5225 4.0729 32 1 -0.2609 -1.9610 4.9079 33 1 1.6715 -2.5115 6.3601 34 1 1.8540 -4.0732 5.5257 35 1 -0.4310 -4.7211 6.2366 36 1 -0.6142 -3.1597 7.0714 37 1 -1.7955 -5.6289 9.5348 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385197234.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:39 Heat of formation + Delta-G solvation = -94.669682 kcal Electronic energy + Delta-G solvation = -15181.038471 eV Core-core repulsion = 12661.716096 eV Total energy + Delta-G solvation = -2519.322375 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.42515 -36.88633 -34.67298 -33.45665 -32.56409 -31.21525 -27.35787 -26.77367 -23.80566 -23.14791 -22.24351 -21.66711 -18.44370 -17.75138 -17.33322 -16.71727 -16.54623 -16.51589 -16.01160 -15.08031 -14.66466 -14.54746 -14.25264 -13.84856 -13.61794 -13.55840 -13.26153 -12.91321 -12.83226 -12.51683 -12.37112 -12.32681 -12.11040 -11.98136 -11.90698 -11.44815 -11.34823 -11.01612 -10.72239 -10.62399 -10.55672 -8.63506 -8.20300 -6.32236 0.64281 1.39670 1.43085 1.51096 1.60374 2.40828 2.84118 3.12487 3.35625 3.71451 3.93755 3.96121 4.00096 4.08985 4.23244 4.35749 4.43274 4.51308 4.53006 4.66521 4.74497 4.79132 4.82135 4.90019 4.98443 5.04586 5.09655 5.24578 5.26791 5.28552 5.51985 5.74359 5.85170 5.88188 6.23873 6.85214 7.37242 8.91467 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.059884 B = 0.003425 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.457495 B = 8172.878438 C = 8482.114198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.096 3.904 3 H 0.094 0.906 4 O -0.392 6.392 5 C 0.048 3.952 6 C -0.150 4.150 7 C -0.091 4.091 8 H 0.112 0.888 9 S -0.255 6.255 10 C -0.085 4.085 11 C -0.093 4.093 12 C -0.091 4.091 13 C 0.022 3.978 14 C -0.546 4.546 15 H 0.062 0.938 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.266 1.266 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.106 0.894 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.055 0.945 35 H -0.011 1.011 36 H -0.010 1.010 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.899 10.446 -18.228 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.037 3.963 3 H 0.112 0.888 4 O -0.312 6.312 5 C -0.029 4.029 6 C -0.189 4.189 7 C -0.220 4.220 8 H 0.130 0.870 9 S -0.025 6.025 10 C -0.233 4.233 11 C -0.131 4.131 12 C -0.131 4.131 13 C -0.016 4.016 14 C -0.584 4.584 15 H 0.080 0.920 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.190 1.190 20 H -0.209 1.209 21 H -0.191 1.191 22 H 0.101 0.899 23 H 0.092 0.908 24 H 0.077 0.923 25 H 0.124 0.876 26 H 0.098 0.902 27 H 0.118 0.882 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.007 0.993 36 H 0.008 0.992 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.558 10.396 -18.587 22.952 hybrid contribution 1.217 -0.575 1.507 2.021 sum 9.775 9.821 -17.080 21.994 Atomic orbital electron populations 1.21828 0.93507 1.03092 1.03134 1.22608 0.95636 0.95616 0.82415 0.88826 1.88888 1.40897 1.68104 1.33335 1.23692 0.87241 0.97190 0.94791 1.23567 1.00508 0.97601 0.97224 1.24717 0.97515 1.00342 0.99418 0.87011 1.87239 1.17008 1.75518 1.22707 1.23439 1.00696 1.02926 0.96195 1.21212 0.97216 0.99626 0.95077 1.21421 0.98037 0.99113 0.94493 1.19029 0.94402 0.94270 0.93869 1.21709 0.94160 1.37198 1.05322 0.91970 1.26041 0.95509 0.96516 1.02010 1.70104 1.06718 1.45016 1.35683 0.85473 0.78148 0.78897 0.78370 1.19026 1.20882 1.19054 0.89909 0.90774 0.92345 0.87570 0.90178 0.88212 0.90386 0.89480 0.89597 0.92599 0.92450 0.92597 0.92666 0.99266 0.99208 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 8.29 71.98 0.60 -2.47 16 2 C 0.10 1.74 4.06 30.97 0.13 1.87 16 3 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 4 O -0.39 -8.05 11.19 -148.98 -1.67 -9.71 16 5 C 0.05 0.69 7.72 72.66 0.56 1.25 16 6 C -0.15 -2.40 6.68 31.89 0.21 -2.19 16 7 C -0.09 -1.66 3.54 31.59 0.11 -1.55 16 8 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 9 S -0.25 -6.32 17.80 -56.49 -1.01 -7.32 16 10 C -0.08 -2.24 5.90 71.98 0.42 -1.81 16 11 C -0.09 -3.17 5.22 30.60 0.16 -3.01 16 12 C -0.09 -3.72 5.15 30.59 0.16 -3.56 16 13 C 0.02 1.16 4.97 29.85 0.15 1.31 16 14 C -0.55 -31.50 9.11 25.60 0.23 -31.26 16 15 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 16 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 17 N -0.94 -57.95 13.29 21.45 0.28 -57.66 16 18 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 22 H 0.08 1.60 7.38 -2.39 -0.02 1.58 16 23 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.06 1.35 7.16 -2.39 -0.02 1.33 16 25 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16 28 H 0.08 1.50 7.83 -2.39 -0.02 1.48 16 29 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 35 H -0.01 -0.65 8.14 -2.39 -0.02 -0.66 16 36 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 37 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -65.94 311.66 3.84 -62.11 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 1.00 Total: 7.24 kcal Atomic # 6 Polarization: -44.34 SS G_CDS: 3.19 Total: -41.15 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.28 Total: -57.66 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -1.67 Total: -9.71 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: -6.32 SS G_CDS: -1.01 Total: -7.32 kcal Total: -65.94 3.84 -62.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385197234.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.563 kcal (2) G-P(sol) polarization free energy of solvation -65.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds