Wall clock time and date at job start Mon Mar 30 2020 05:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.89977 * 2 1 4 4 O 1.43234 * 109.82960 * 239.06375 * 2 1 3 5 5 C 1.43649 * 109.97424 * 242.19767 * 4 2 1 6 6 C 1.54947 * 105.13418 * 335.57415 * 5 4 2 7 7 C 1.54376 * 109.82907 * 120.93102 * 2 1 3 8 8 H 1.09009 * 111.02597 * 22.60255 * 7 2 1 9 9 S 1.81397 * 110.85015 * 259.05899 * 7 2 1 10 10 C 1.81404 * 103.00143 * 180.71431 * 9 7 2 11 11 C 1.53000 * 109.46946 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 11 15 15 H 1.08009 * 120.00339 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00310 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99776 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00473 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47163 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47233 * 120.00015 * 18 16 14 21 21 H 1.48504 * 109.47158 * 239.99855 * 18 16 14 22 22 H 1.08998 * 109.47211 * 299.07186 * 1 2 3 23 23 H 1.09000 * 109.46751 * 59.06853 * 1 2 3 24 24 H 1.08996 * 109.47224 * 179.06724 * 1 2 3 25 25 H 1.09002 * 110.30932 * 216.65888 * 5 4 2 26 26 H 1.08994 * 110.39203 * 94.53316 * 5 4 2 27 27 H 1.09002 * 111.12721 * 278.52280 * 6 5 4 28 28 H 1.09005 * 111.16032 * 154.37299 * 6 5 4 29 29 H 1.09002 * 109.47124 * 60.00087 * 10 9 7 30 30 H 1.09001 * 109.46975 * 300.00209 * 10 9 7 31 31 H 1.09001 * 109.47194 * 299.99756 * 11 10 9 32 32 H 1.08992 * 109.47399 * 59.99928 * 11 10 9 33 33 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 34 34 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 35 35 H 1.08992 * 109.47098 * 299.99158 * 13 12 11 36 36 H 1.09001 * 109.47583 * 60.00267 * 13 12 11 37 37 H 0.96998 * 120.00187 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 8 2.0159 -0.6927 -1.1557 5 6 2.7748 -1.8445 -0.7545 6 6 3.2731 -1.5222 0.6768 7 6 2.0537 -0.7465 1.2457 8 1 1.3027 -1.4348 1.6336 9 16 2.5754 0.4251 2.5286 10 6 3.1611 -0.6603 3.8588 11 6 3.6433 0.1900 5.0358 12 6 4.1379 -0.7255 6.1574 13 6 4.6196 0.1248 7.3347 14 6 5.1061 -0.7770 8.4397 15 1 5.0753 -1.8493 8.3148 16 6 5.5916 -0.2331 9.6100 17 7 5.6306 1.0727 9.7616 18 14 6.1954 -1.3508 10.9795 19 1 6.0480 -2.7684 10.5627 20 1 7.6254 -1.0636 11.2587 21 1 5.3934 -1.1088 12.2057 22 1 -0.3633 0.4993 0.8982 23 1 -0.3633 0.5282 -0.8815 24 1 -0.3633 -1.0275 -0.0167 25 1 3.6210 -1.9925 -1.4254 26 1 2.1416 -2.7316 -0.7439 27 1 4.1621 -0.8921 0.6507 28 1 3.4576 -2.4346 1.2440 29 1 3.9842 -1.2734 3.4916 30 1 2.3459 -1.3053 4.1869 31 1 4.4584 0.8352 4.7079 32 1 2.8201 0.8027 5.4028 33 1 3.3231 -1.3710 6.4854 34 1 4.9614 -1.3380 5.7901 35 1 5.4342 0.7705 7.0071 36 1 3.7958 0.7369 7.7019 37 1 5.9718 1.4554 10.5850 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385197235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:41 Heat of formation + Delta-G solvation = -80.462262 kcal Electronic energy + Delta-G solvation = -15086.124407 eV Core-core repulsion = 12567.418111 eV Total energy + Delta-G solvation = -2518.706295 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.72792 -35.23799 -32.72535 -32.63415 -31.78219 -29.49389 -26.46456 -25.26551 -22.31805 -22.22741 -21.18064 -20.11502 -17.52946 -16.60532 -16.21045 -15.58638 -15.19657 -14.67211 -14.47839 -14.19347 -13.89051 -13.10140 -13.02219 -12.83923 -12.49763 -12.30886 -12.08430 -11.74770 -11.61662 -11.33156 -11.09780 -11.07262 -10.69915 -10.57401 -10.45784 -9.91539 -9.84179 -9.71781 -9.31476 -9.03218 -8.35912 -7.72478 -6.00526 -4.03172 1.52397 2.50401 3.30114 3.37559 3.41434 3.52149 4.03665 4.36949 4.45097 4.66700 4.77770 4.85959 5.03282 5.11435 5.18179 5.25796 5.30708 5.35210 5.39031 5.51247 5.67325 5.69134 5.79677 5.89765 5.95920 6.08748 6.37987 6.67822 6.68899 6.84453 7.09199 7.67149 7.81283 7.99605 8.41664 9.04265 9.60979 11.10817 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.059642 B = 0.003323 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.358626 B = 8424.688579 C = 8664.388628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.102 3.898 3 H 0.090 0.910 4 O -0.376 6.376 5 C 0.054 3.946 6 C -0.152 4.152 7 C -0.096 4.096 8 H 0.099 0.901 9 S -0.245 6.245 10 C -0.077 4.077 11 C -0.103 4.103 12 C -0.104 4.104 13 C 0.020 3.980 14 C -0.521 4.521 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.870 -4.702 -19.698 21.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.043 3.957 3 H 0.107 0.893 4 O -0.296 6.296 5 C -0.024 4.024 6 C -0.192 4.192 7 C -0.225 4.225 8 H 0.118 0.882 9 S -0.015 6.015 10 C -0.225 4.225 11 C -0.142 4.142 12 C -0.143 4.143 13 C -0.017 4.017 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.092 0.908 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.079 0.921 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.915 -3.379 -19.809 21.598 hybrid contribution 0.425 -2.006 1.168 2.359 sum -7.490 -5.385 -18.641 20.799 Atomic orbital electron populations 1.22148 0.94078 1.02689 1.02957 1.22468 0.94519 0.96273 0.82407 0.89256 1.88447 1.70983 1.40462 1.29661 1.23344 0.95166 0.88864 0.95015 1.23685 0.98006 1.01287 0.96185 1.24793 1.00293 0.99649 0.97810 0.88248 1.86918 1.83062 1.16381 1.15145 1.23578 1.03007 0.99856 0.96101 1.21466 1.01213 0.98301 0.93253 1.21637 0.99371 0.98015 0.95314 1.19105 0.96320 0.94960 0.91293 1.21297 1.41404 0.93112 1.00110 0.92685 1.25038 0.95945 0.94989 0.98564 1.69978 1.46814 1.10107 1.26537 0.86546 0.78470 0.80936 0.82101 1.19769 1.21003 1.20998 0.90795 0.91554 0.92207 0.89335 0.92120 0.88858 0.89559 0.90260 0.90327 0.91467 0.91465 0.93292 0.93286 0.96520 0.96524 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.44 37.16 0.35 -1.06 16 2 C 0.10 1.05 3.79 -26.01 -0.10 0.95 16 3 H 0.09 0.99 7.77 -51.93 -0.40 0.58 16 4 O -0.38 -4.16 11.02 -35.23 -0.39 -4.55 16 5 C 0.05 0.46 7.78 38.19 0.30 0.76 16 6 C -0.15 -1.38 6.51 -24.48 -0.16 -1.54 16 7 C -0.10 -0.99 3.04 -24.78 -0.08 -1.06 16 8 H 0.10 0.96 7.86 -51.92 -0.41 0.56 16 9 S -0.24 -3.16 21.02 -107.50 -2.26 -5.42 16 10 C -0.08 -1.05 5.82 37.16 0.22 -0.83 16 11 C -0.10 -1.74 5.22 -26.73 -0.14 -1.88 16 12 C -0.10 -2.09 5.15 -26.73 -0.14 -2.22 16 13 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 14 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 15 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 18 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.91 8.03 -51.93 -0.42 0.50 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.01 8.14 -51.92 -0.42 0.58 16 30 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 316.17 15.07 4.76 4.76 Total: -1.00 -30.30 316.17 -9.15 -39.45 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -6.69 Total: -4.43 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -0.30 Total: -20.11 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.74 Total: -26.34 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.39 Total: -4.55 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.26 Total: -5.42 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.30 -9.15 -39.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385197235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.014 kcal (2) G-P(sol) polarization free energy of solvation -30.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds