Wall clock time and date at job start Mon Mar 30 2020 06:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47375 * 270.00761 * 3 2 1 5 5 H 1.48508 * 109.47196 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.47051 * 150.00381 * 3 2 1 7 7 C 1.37876 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.46840 * 180.02562 * 12 11 10 14 14 C 1.36037 * 126.34815 * 264.68633 * 13 12 11 15 15 N 1.30107 * 110.10182 * 179.87780 * 14 13 12 16 16 C 1.35783 * 109.64164 * 0.39107 * 15 14 13 17 17 C 1.39747 * 133.60288 * 179.76274 * 16 15 14 18 18 C 1.36600 * 119.88568 * 180.02562 * 17 16 15 19 19 C 1.38771 * 120.67065 * 359.97394 * 18 17 16 20 20 C 1.37856 * 120.45260 * 0.04742 * 19 18 17 21 21 C 1.38055 * 126.35328 * 84.99901 * 13 12 11 22 22 H 0.97008 * 120.00167 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 24 24 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 25 25 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 26 26 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 27 27 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 28 28 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 29 29 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 30 30 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 31 31 H 1.08003 * 124.94734 * 0.02562 * 14 13 12 32 32 H 1.08001 * 120.05734 * 359.97438 * 17 16 15 33 33 H 1.08001 * 119.66102 * 179.97438 * 18 17 16 34 34 H 1.08004 * 119.77568 * 180.02562 * 19 18 17 35 35 H 1.07994 * 120.15578 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 6 6.0615 -4.0790 -0.0028 13 7 7.5264 -4.0790 -0.0033 14 6 8.3323 -4.1802 -1.0946 15 7 9.5815 -4.1440 -0.7329 16 6 9.6625 -4.0256 0.6173 17 6 10.7301 -3.9473 1.5156 18 6 10.4859 -3.8303 2.8545 19 6 9.1850 -3.7875 3.3357 20 6 8.1163 -3.8636 2.4682 21 6 8.3452 -3.9823 1.1040 22 1 -0.4851 0.8401 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8744 -0.6801 -0.8912 25 1 3.6578 -3.1506 -0.8907 26 1 3.6585 -3.1501 0.8892 27 1 5.9156 -2.1223 0.8873 28 1 5.9141 -2.1230 -0.8927 29 1 5.6989 -4.5929 0.8875 30 1 5.6974 -4.5928 -0.8924 31 1 7.9855 -4.2744 -2.1131 32 1 11.7466 -3.9801 1.1520 33 1 11.3137 -3.7705 3.5456 34 1 9.0085 -3.6944 4.3972 35 1 7.1059 -3.8294 2.8478 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385226976.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:47 Heat of formation + Delta-G solvation = 53.443331 kcal Electronic energy + Delta-G solvation = -16419.464913 eV Core-core repulsion = 13803.414000 eV Total energy + Delta-G solvation = -2616.050913 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.15481 -37.46934 -35.90858 -33.74969 -32.18350 -30.55383 -29.36651 -28.83929 -25.37253 -23.30928 -22.45879 -21.91198 -20.48058 -20.19753 -17.29318 -17.01392 -16.76240 -15.87701 -15.41954 -15.11370 -14.31840 -14.15254 -13.96855 -13.65030 -12.96781 -12.85010 -12.69206 -12.12470 -12.03690 -11.72723 -11.53585 -11.32892 -11.02901 -10.76814 -10.53219 -10.01305 -9.99525 -9.83383 -9.65549 -9.25832 -8.59625 -8.40996 -8.14258 -6.10181 -4.08863 0.90861 1.47340 2.60119 2.77571 3.26531 3.34493 3.37873 3.83277 4.22201 4.40139 4.50102 4.62122 4.92303 4.97015 5.01052 5.23813 5.27008 5.36191 5.36600 5.42551 5.59052 5.70236 5.81203 6.08304 6.08656 6.35210 6.41827 6.43851 6.49900 6.51097 6.76800 6.80686 7.10802 7.19600 7.32673 7.72642 7.82443 8.46749 8.93991 9.52346 11.03183 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.033416 B = 0.004268 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.716363 B = 6558.313127 C = 6814.545873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.099 4.099 11 C -0.137 4.137 12 C 0.108 3.892 13 N -0.486 5.486 14 C 0.261 3.739 15 N -0.505 5.505 16 C 0.041 3.959 17 C -0.068 4.068 18 C -0.131 4.131 19 C -0.107 4.107 20 C -0.105 4.105 21 C 0.048 3.952 22 H 0.263 0.737 23 H 0.015 0.985 24 H 0.011 0.989 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.212 0.788 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.253 -9.033 3.116 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.175 4.175 12 C -0.013 4.013 13 N -0.175 5.175 14 C -0.024 4.024 15 N -0.224 5.224 16 C -0.077 4.077 17 C -0.088 4.088 18 C -0.152 4.152 19 C -0.127 4.127 20 C -0.126 4.126 21 C -0.061 4.061 22 H 0.073 0.927 23 H 0.033 0.967 24 H 0.029 0.971 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.229 0.771 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 18.643 -8.966 2.574 20.847 hybrid contribution -0.537 1.034 0.375 1.224 sum 18.106 -7.932 2.949 19.986 Atomic orbital electron populations 1.69912 1.06310 1.26962 1.50991 1.25033 0.94731 0.99207 0.94483 0.86781 0.80336 0.83623 0.78556 1.20256 1.21303 1.19091 1.21132 0.89457 0.94479 1.51055 0.91029 1.19558 0.97183 0.92037 0.96300 1.21409 0.90404 1.00494 1.01437 1.22116 0.98799 0.93804 1.02804 1.22092 0.74641 0.99985 1.04620 1.45680 1.07650 1.58462 1.05696 1.25356 0.85182 0.98232 0.93667 1.70450 1.18337 1.22575 1.11010 1.19103 0.92268 1.05896 0.90458 1.19984 0.97251 0.99875 0.91673 1.20613 0.96960 1.02765 0.94848 1.20878 0.91956 1.00579 0.99289 1.20049 0.99914 1.03516 0.89127 1.18945 0.91187 1.06222 0.89793 0.92677 0.96669 0.97073 0.92394 0.92448 0.91747 0.91631 0.89301 0.88522 0.77145 0.85667 0.85594 0.85403 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.63 9.66 -34.44 -0.33 -14.97 16 8 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 9 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16 10 C -0.10 -1.76 5.15 -26.74 -0.14 -1.90 16 11 C -0.14 -1.96 5.54 -26.73 -0.15 -2.11 16 12 C 0.11 1.23 6.16 -4.04 -0.02 1.20 16 13 N -0.49 -6.15 2.81 -115.80 -0.32 -6.48 16 14 C 0.26 3.17 12.49 -89.79 -1.12 2.05 16 15 N -0.50 -7.39 11.27 -12.05 -0.14 -7.52 16 16 C 0.04 0.60 7.23 -84.70 -0.61 -0.01 16 17 C -0.07 -0.83 10.05 -39.61 -0.40 -1.23 16 18 C -0.13 -1.34 9.96 -39.98 -0.40 -1.74 16 19 C -0.11 -1.12 10.03 -39.52 -0.40 -1.52 16 20 C -0.11 -1.28 10.05 -39.50 -0.40 -1.68 16 21 C 0.05 0.67 6.87 -83.99 -0.58 0.09 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 24 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.10 0.90 8.13 -51.93 -0.42 0.48 16 31 H 0.21 1.68 8.06 -52.48 -0.42 1.25 16 32 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 34 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 35 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 299.17 15.07 4.51 4.51 Total: -1.00 -32.84 299.17 -9.61 -42.45 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -5.00 Total: -2.66 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -4.75 Total: -20.40 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.31 Total: -40.84 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.84 -9.61 -42.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385226976.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.893 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds