Wall clock time and date at job start Mon Mar 30 2020 06:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47375 * 270.00761 * 3 2 1 5 5 H 1.48508 * 109.47196 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.47051 * 150.00381 * 3 2 1 7 7 C 1.37876 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.46840 * 180.02562 * 12 11 10 14 14 C 1.36037 * 126.34815 * 264.68633 * 13 12 11 15 15 N 1.30107 * 110.10182 * 179.87780 * 14 13 12 16 16 C 1.35783 * 109.64164 * 0.39107 * 15 14 13 17 17 C 1.39747 * 133.60288 * 179.76274 * 16 15 14 18 18 C 1.36600 * 119.88568 * 180.02562 * 17 16 15 19 19 C 1.38771 * 120.67065 * 359.97394 * 18 17 16 20 20 C 1.37856 * 120.45260 * 0.04742 * 19 18 17 21 21 C 1.38055 * 126.35328 * 84.99901 * 13 12 11 22 22 H 0.97008 * 120.00167 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 24 24 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 25 25 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 26 26 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 27 27 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 28 28 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 29 29 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 30 30 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 31 31 H 1.08003 * 124.94734 * 0.02562 * 14 13 12 32 32 H 1.08001 * 120.05734 * 359.97438 * 17 16 15 33 33 H 1.08001 * 119.66102 * 179.97438 * 18 17 16 34 34 H 1.08004 * 119.77568 * 180.02562 * 19 18 17 35 35 H 1.07994 * 120.15578 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 6 6.0615 -4.0790 -0.0028 13 7 7.5264 -4.0790 -0.0033 14 6 8.3323 -4.1802 -1.0946 15 7 9.5815 -4.1440 -0.7329 16 6 9.6625 -4.0256 0.6173 17 6 10.7301 -3.9473 1.5156 18 6 10.4859 -3.8303 2.8545 19 6 9.1850 -3.7875 3.3357 20 6 8.1163 -3.8636 2.4682 21 6 8.3452 -3.9823 1.1040 22 1 -0.4851 0.8401 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8744 -0.6801 -0.8912 25 1 3.6578 -3.1506 -0.8907 26 1 3.6585 -3.1501 0.8892 27 1 5.9156 -2.1223 0.8873 28 1 5.9141 -2.1230 -0.8927 29 1 5.6989 -4.5929 0.8875 30 1 5.6974 -4.5928 -0.8924 31 1 7.9855 -4.2744 -2.1131 32 1 11.7466 -3.9801 1.1520 33 1 11.3137 -3.7705 3.5456 34 1 9.0085 -3.6944 4.3972 35 1 7.1059 -3.8294 2.8478 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385226976.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:47 Heat of formation + Delta-G solvation = 35.855799 kcal Electronic energy + Delta-G solvation = -16420.227566 eV Core-core repulsion = 13803.414000 eV Total energy + Delta-G solvation = -2616.813566 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.05418 -38.33500 -37.14839 -35.30435 -33.88794 -31.64294 -30.26921 -30.19267 -26.86512 -24.17055 -23.83092 -22.90811 -21.85765 -21.34427 -18.89718 -18.15058 -17.94091 -16.68655 -16.49321 -16.34513 -16.20475 -15.13718 -14.92600 -14.75286 -14.49714 -14.15970 -14.04666 -13.75551 -12.99798 -12.83522 -12.71277 -12.59656 -12.32368 -12.20258 -11.83870 -11.76344 -11.44376 -11.34454 -11.11688 -10.91773 -10.78194 -9.30477 -9.04725 -8.31363 -6.35100 0.04187 0.59452 1.33549 1.35403 1.46723 1.70923 1.87486 2.33737 2.94239 3.04381 3.37994 3.67271 3.73892 3.92466 4.10600 4.21781 4.29118 4.30529 4.51608 4.53696 4.59654 4.68837 4.73698 4.86172 4.97181 5.09629 5.12691 5.27264 5.50499 5.52356 5.57912 5.60248 5.63092 5.65635 5.98716 6.23424 6.26900 6.73711 6.90505 7.30088 8.85320 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.033416 B = 0.004268 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.716363 B = 6558.313127 C = 6814.545873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.251 1.251 7 C -0.532 4.532 8 H 0.036 0.964 9 C -0.015 4.015 10 C -0.091 4.091 11 C -0.123 4.123 12 C 0.115 3.885 13 N -0.489 5.489 14 C 0.262 3.738 15 N -0.539 5.539 16 C 0.010 3.990 17 C -0.087 4.087 18 C -0.125 4.125 19 C -0.105 4.105 20 C -0.122 4.122 21 C 0.026 3.974 22 H 0.266 0.734 23 H 0.013 0.987 24 H 0.016 0.984 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.123 0.877 31 H 0.248 0.752 32 H 0.134 0.866 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.078 -8.831 3.549 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.175 1.175 7 C -0.570 4.570 8 H 0.054 0.946 9 C -0.052 4.052 10 C -0.129 4.129 11 C -0.161 4.161 12 C -0.006 4.006 13 N -0.178 5.178 14 C -0.023 4.023 15 N -0.258 5.258 16 C -0.108 4.108 17 C -0.106 4.106 18 C -0.145 4.145 19 C -0.124 4.124 20 C -0.143 4.143 21 C -0.084 4.084 22 H 0.075 0.925 23 H 0.032 0.968 24 H 0.034 0.966 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.141 0.859 31 H 0.263 0.737 32 H 0.152 0.848 33 H 0.175 0.825 34 H 0.174 0.826 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 20.488 -8.780 3.015 22.493 hybrid contribution -1.129 0.905 0.279 1.474 sum 19.359 -7.875 3.294 21.157 Atomic orbital electron populations 1.70063 1.08238 1.28125 1.52760 1.25998 0.95570 1.03433 0.94258 0.85690 0.79368 0.78588 0.79176 1.19159 1.20985 1.17460 1.21541 0.92217 0.93159 1.50116 0.94561 1.19547 0.93811 0.95627 0.96216 1.21234 0.92888 0.97052 1.01721 1.21883 0.95937 0.95964 1.02327 1.22033 0.74147 0.98039 1.06370 1.45730 1.07844 1.58634 1.05606 1.26084 0.84630 0.96730 0.94868 1.70417 1.19824 1.24126 1.11471 1.19541 0.93364 1.07014 0.90848 1.20298 0.97404 1.00500 0.92416 1.21004 0.97984 1.00898 0.94590 1.21295 0.91626 0.98956 1.00547 1.20321 1.00925 1.04129 0.88895 1.19268 0.91361 1.07039 0.90689 0.92511 0.96819 0.96577 0.91869 0.92544 0.92817 0.91551 0.88583 0.85910 0.73659 0.84781 0.82466 0.82596 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.28 13.96 21.45 0.30 -58.99 16 2 C 0.00 0.24 5.47 84.65 0.46 0.71 16 3 Si 0.95 44.15 27.47 68.60 1.88 46.03 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 7 C -0.53 -30.08 9.66 25.60 0.25 -29.83 16 8 H 0.04 2.23 7.99 -2.91 -0.02 2.21 16 9 C -0.01 -0.65 4.04 29.84 0.12 -0.53 16 10 C -0.09 -3.09 5.15 30.59 0.16 -2.93 16 11 C -0.12 -3.26 5.54 30.59 0.17 -3.09 16 12 C 0.12 2.34 6.16 86.38 0.53 2.87 16 13 N -0.49 -11.54 2.81 -520.28 -1.46 -13.00 16 14 C 0.26 5.94 12.49 180.06 2.25 8.19 16 15 N -0.54 -15.42 11.27 -192.03 -2.16 -17.58 16 16 C 0.01 0.29 7.23 39.45 0.29 0.57 16 17 C -0.09 -2.01 10.05 22.25 0.22 -1.79 16 18 C -0.12 -2.27 9.96 22.01 0.22 -2.05 16 19 C -0.10 -1.94 10.03 22.31 0.22 -1.72 16 20 C -0.12 -2.79 10.05 22.32 0.22 -2.56 16 21 C 0.03 0.68 6.87 38.86 0.27 0.95 16 22 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 23 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 24 H 0.02 0.70 7.57 -2.39 -0.02 0.68 16 25 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.12 1.87 8.13 -2.39 -0.02 1.85 16 31 H 0.25 3.26 8.06 -2.91 -0.02 3.24 16 32 H 0.13 2.70 8.06 -2.91 -0.02 2.67 16 33 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 35 H 0.13 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -72.21 299.17 4.94 -67.26 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 1.00 Total: 7.50 kcal Atomic # 6 Polarization: -36.60 SS G_CDS: 5.38 Total: -31.22 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -3.33 Total: -89.57 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.03 kcal Total: -72.21 4.94 -67.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385226976.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.117 kcal (2) G-P(sol) polarization free energy of solvation -72.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds