Wall clock time and date at job start Mon Mar 30 2020 06:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86797 * 119.99772 * 2 1 4 4 H 1.48500 * 109.46768 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47154 * 299.99576 * 3 2 1 6 6 H 1.48502 * 109.47451 * 59.99726 * 3 2 1 7 7 C 1.40023 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99741 * 180.02562 * 7 2 1 9 9 C 1.41320 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.40588 * 119.78262 * 179.97438 * 9 7 2 11 11 C 1.38349 * 119.14693 * 180.02562 * 10 9 7 12 12 C 1.38638 * 118.67765 * 359.74943 * 11 10 9 13 13 C 1.39760 * 119.49553 * 0.49643 * 12 11 10 14 14 N 1.38822 * 119.58690 * 179.77073 * 13 12 11 15 15 C 1.46505 * 119.99907 * 4.86605 * 14 13 12 16 16 H 1.09000 * 115.55279 * 346.64913 * 15 14 13 17 17 C 1.53002 * 117.49739 * 132.31602 * 15 14 13 18 18 C 1.53005 * 117.49756 * 200.97316 * 15 14 13 19 19 H 1.09000 * 117.49439 * 144.99435 * 18 15 14 20 20 C 1.53006 * 117.49805 * 0.02562 * 18 15 14 21 21 C 1.52994 * 117.49759 * 128.61829 * 20 18 15 22 22 C 1.52994 * 60.00180 * 252.50835 * 21 20 18 23 23 N 1.31978 * 120.82744 * 359.49216 * 13 12 11 24 24 H 0.97007 * 119.99762 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.42856 * 0.02562 * 10 9 7 26 26 H 1.07999 * 120.66051 * 180.02562 * 11 10 9 27 27 H 1.08008 * 120.25275 * 180.27009 * 12 11 10 28 28 H 0.97004 * 120.00231 * 184.87259 * 14 13 12 29 29 H 1.08994 * 117.50076 * 215.00279 * 17 15 14 30 30 H 1.09005 * 117.49857 * 0.02802 * 17 15 14 31 31 H 1.08998 * 115.54437 * 274.32476 * 20 18 15 32 32 H 1.09007 * 117.50273 * 359.97438 * 21 20 18 33 33 H 1.09005 * 117.49855 * 145.02017 * 21 20 18 34 34 H 1.08998 * 117.50257 * 252.51534 * 22 21 20 35 35 H 1.08997 * 117.49737 * 107.48707 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8826 2.3965 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2126 0.0010 9 6 1.3009 -2.4365 0.0005 10 6 2.0085 -3.6514 0.0005 11 6 1.3035 -4.8417 0.0000 12 6 -0.0821 -4.7944 0.0048 13 6 -0.7283 -3.5551 -0.0005 14 7 -2.1156 -3.5055 -0.0006 15 6 -2.8928 -4.7422 0.1125 16 1 -2.3319 -5.6651 -0.0346 17 6 -4.0389 -4.7661 1.1259 18 6 -4.3434 -4.7119 -0.3733 19 1 -4.7366 -5.6149 -0.8402 20 6 -4.8710 -3.3925 -0.9406 21 6 -5.5493 -3.4339 -2.3114 22 6 -4.1580 -2.8145 -2.1647 23 7 -0.0361 -2.4314 0.0000 24 1 -0.4850 0.8401 -0.0004 25 1 3.0885 -3.6554 0.0010 26 1 1.8221 -5.7890 0.0004 27 1 -0.6578 -5.7082 0.0089 28 1 -2.5704 -2.6520 -0.0756 29 1 -4.2320 -5.7047 1.6453 30 1 -4.2149 -3.8615 1.7081 31 1 -5.2617 -2.6880 -0.2064 32 1 -5.6193 -4.4011 -2.8093 33 1 -6.3866 -2.7566 -2.4793 34 1 -4.0800 -1.7296 -2.2361 35 1 -3.3131 -3.3742 -2.5659 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390760795.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:26 Heat of formation + Delta-G solvation = 89.432407 kcal Electronic energy + Delta-G solvation = -17020.334671 eV Core-core repulsion = 14405.844361 eV Total energy + Delta-G solvation = -2614.490310 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.94123 -37.79483 -35.36630 -33.64343 -32.28111 -30.27284 -28.32105 -25.36650 -23.69799 -22.26535 -22.12242 -21.30916 -20.51336 -19.14865 -17.29960 -16.50880 -15.60936 -15.16049 -14.75831 -14.46610 -14.00128 -13.54599 -13.22379 -12.79552 -12.66878 -12.02244 -11.78676 -11.55031 -11.30297 -11.17578 -10.96981 -10.94957 -10.70659 -10.52299 -10.33668 -10.09542 -9.87665 -9.50411 -9.31535 -8.65205 -7.88775 -7.49568 -6.43837 -6.31336 -4.45733 2.86701 3.12408 3.16818 3.23268 3.29099 3.84431 3.99419 4.08177 4.25441 4.80704 4.88639 5.03149 5.12544 5.28890 5.40606 5.53927 5.61764 5.77105 5.94141 6.05053 6.09417 6.17008 6.17976 6.26700 6.35522 6.44364 6.66783 6.86842 6.91557 6.97885 7.26746 7.61782 7.83224 7.95075 8.19149 8.39306 8.71800 8.82092 9.14061 10.25700 10.41569 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022439 B = 0.006777 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.553392 B = 4130.931424 C = 5015.580150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.434 4.434 8 H 0.083 0.917 9 C 0.292 3.708 10 C -0.317 4.317 11 C -0.032 4.032 12 C -0.368 4.368 13 C 0.413 3.587 14 N -0.701 5.701 15 C 0.122 3.878 16 H 0.126 0.874 17 C -0.201 4.201 18 C -0.144 4.144 19 H 0.105 0.895 20 C -0.123 4.123 21 C -0.182 4.182 22 C -0.165 4.165 23 N -0.530 5.530 24 H 0.268 0.732 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.399 0.601 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.322 -4.538 -1.375 9.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.154 4.154 3 Si 0.728 3.272 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.466 4.466 8 H 0.101 0.899 9 C 0.165 3.835 10 C -0.340 4.340 11 C -0.056 4.056 12 C -0.393 4.393 13 C 0.173 3.827 14 N -0.334 5.334 15 C 0.013 3.987 16 H 0.143 0.857 17 C -0.241 4.241 18 C -0.164 4.164 19 H 0.123 0.877 20 C -0.141 4.141 21 C -0.219 4.219 22 C -0.202 4.202 23 N -0.251 5.251 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.235 0.765 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.887 -3.761 -1.367 9.746 hybrid contribution 0.514 0.185 0.043 0.548 sum -8.372 -3.576 -1.324 9.200 Atomic orbital electron populations 1.70168 1.07123 1.27168 1.29231 1.26049 0.94855 1.00900 0.93574 0.86334 0.80941 0.81465 0.78412 1.18438 1.19962 1.19973 1.19615 0.94176 0.89370 1.43437 0.89858 1.18208 0.86864 0.91870 0.86531 1.21534 0.98413 0.93477 1.20543 1.20595 0.93431 0.96373 0.95223 1.20639 0.94567 0.95535 1.28601 1.18486 0.84067 0.90297 0.89809 1.43535 1.02382 1.06289 1.81170 1.21384 0.86072 0.90622 1.00648 0.85674 1.23587 1.05811 1.03032 0.91656 1.22269 1.00030 0.97206 0.96846 0.87709 1.21589 1.04159 0.97508 0.90846 1.22946 0.96473 1.02515 0.99939 1.22943 0.95219 1.00697 1.01360 1.68202 1.07681 1.24306 1.24945 0.92047 0.88725 0.88950 0.89071 0.76507 0.88794 0.88847 0.88077 0.89153 0.89273 0.88816 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.09 11.46 55.55 0.64 -18.45 16 2 C 0.07 1.83 5.50 -17.35 -0.10 1.74 16 3 Si 0.90 18.85 29.56 -169.99 -5.02 13.82 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.43 -11.84 9.14 -37.74 -0.34 -12.19 16 8 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 9 C 0.29 8.21 6.55 -85.00 -0.56 7.65 16 10 C -0.32 -8.09 9.83 -38.65 -0.38 -8.47 16 11 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 12 C -0.37 -8.53 9.37 -38.87 -0.36 -8.89 16 13 C 0.41 10.16 7.64 -155.32 -1.19 8.97 16 14 N -0.70 -14.24 5.16 -53.90 -0.28 -14.51 16 15 C 0.12 1.98 6.22 -67.92 -0.42 1.56 16 16 H 0.13 1.99 5.87 -51.93 -0.30 1.69 16 17 C -0.20 -2.75 10.18 -26.69 -0.27 -3.02 16 18 C -0.14 -1.92 5.87 -90.58 -0.53 -2.45 16 19 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 20 C -0.12 -1.64 5.02 -90.62 -0.45 -2.10 16 21 C -0.18 -2.16 10.25 -26.74 -0.27 -2.43 16 22 C -0.17 -2.37 9.01 -26.73 -0.24 -2.61 16 23 N -0.53 -14.74 7.89 -10.33 -0.08 -14.82 16 24 H 0.27 6.50 8.29 -40.82 -0.34 6.16 16 25 H 0.09 2.25 8.06 -52.48 -0.42 1.83 16 26 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 27 H 0.09 1.86 5.86 -52.48 -0.31 1.55 16 28 H 0.40 8.25 7.33 -40.82 -0.30 7.95 16 29 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 296.55 15.07 4.47 4.47 Total: -1.00 -28.93 296.55 -10.49 -39.42 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -4.68 Total: 13.47 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -5.52 Total: -23.39 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.28 Total: -47.79 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.93 -10.49 -39.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390760795.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.855 kcal (2) G-P(sol) polarization free energy of solvation -28.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds