Wall clock time and date at job start Mon Mar 30 2020 06:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39684 * 120.11172 * 260.27863 * 3 2 1 5 5 C 1.37975 * 119.99243 * 179.75057 * 4 3 2 6 6 C 1.38251 * 120.23529 * 0.54566 * 5 4 3 7 7 C 1.38990 * 120.22703 * 359.70927 * 6 5 4 8 8 N 1.39707 * 119.99598 * 180.02562 * 7 6 5 9 9 C 1.46500 * 120.00252 * 359.97025 * 8 7 6 10 10 C 1.53005 * 109.47367 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.46895 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.46544 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46721 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00107 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99671 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00382 * 359.97438 * 15 13 12 17 17 Si 1.86809 * 119.99649 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47102 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.46773 * 119.99954 * 17 15 13 20 20 H 1.48501 * 109.46833 * 240.00017 * 17 15 13 21 21 C 1.38659 * 120.00299 * 0.02562 * 7 6 5 22 22 H 1.08001 * 120.00210 * 0.02562 * 4 3 2 23 23 H 1.07999 * 119.88045 * 180.25511 * 5 4 3 24 24 H 1.07998 * 119.88594 * 179.72474 * 6 5 4 25 25 H 0.97004 * 119.99915 * 179.97438 * 8 7 6 26 26 H 1.08999 * 109.46968 * 300.00428 * 9 8 7 27 27 H 1.09004 * 109.47007 * 60.00311 * 9 8 7 28 28 H 1.09002 * 109.46912 * 300.00441 * 10 9 8 29 29 H 1.09000 * 109.46625 * 60.00202 * 10 9 8 30 30 H 1.08999 * 109.47329 * 300.00046 * 11 10 9 31 31 H 1.08996 * 109.46697 * 60.00695 * 11 10 9 32 32 H 1.08999 * 109.47346 * 300.00037 * 12 11 10 33 33 H 1.09004 * 109.47233 * 60.00290 * 12 11 10 34 34 H 0.96996 * 120.00182 * 179.97438 * 16 15 13 35 35 H 1.08006 * 120.11350 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 0.2050 1.1910 5 6 4.6484 0.2000 1.1890 6 6 5.3422 0.0044 0.0093 7 6 4.6546 -0.1945 -1.1821 8 7 5.3606 -0.3922 -2.3713 9 6 6.8255 -0.3891 -2.3628 10 6 7.3444 -0.6249 -3.7827 11 6 8.8744 -0.6210 -3.7737 12 6 9.3932 -0.8574 -5.1936 13 6 10.9002 -0.8542 -5.1847 14 1 11.4344 -0.6987 -4.2590 15 6 11.5969 -1.0488 -6.3585 16 7 10.9463 -1.2376 -7.4858 17 14 13.4649 -1.0441 -6.3476 18 1 13.9512 -0.8134 -4.9637 19 1 13.9659 -2.3540 -6.8359 20 1 13.9623 0.0381 -7.2346 21 6 3.2680 -0.1968 -1.1903 22 1 2.7304 0.3625 2.1140 23 1 5.1883 0.3541 2.1116 24 1 6.4222 0.0060 0.0136 25 1 4.8807 -0.5314 -3.2028 26 1 7.1847 0.5740 -2.0003 27 1 7.1867 -1.1817 -1.7073 28 1 6.9852 -1.5879 -4.1456 29 1 6.9833 0.1680 -4.4377 30 1 9.2332 0.3422 -3.4110 31 1 9.2358 -1.4136 -3.1186 32 1 9.0344 -1.8207 -5.5559 33 1 9.0317 -0.0651 -5.8491 34 1 11.4365 -1.3741 -8.3116 35 1 2.7319 -0.3517 -2.1151 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395366045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:47 Heat of formation + Delta-G solvation = 13.768880 kcal Electronic energy + Delta-G solvation = -15568.418989 eV Core-core repulsion = 12950.647662 eV Total energy + Delta-G solvation = -2617.771327 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.51400 -38.04446 -37.14874 -35.75115 -34.09050 -32.15833 -31.24080 -28.99830 -26.44265 -24.94422 -23.22283 -22.86618 -21.72599 -19.54594 -18.44700 -17.21708 -17.09380 -16.53747 -16.52176 -16.25824 -15.14941 -15.13342 -14.68133 -14.64954 -14.45489 -14.10950 -13.79047 -13.59849 -13.48811 -13.09627 -12.89082 -12.52842 -12.36454 -12.30232 -12.16880 -11.99029 -11.42374 -11.28716 -11.03577 -10.90995 -10.54260 -9.85444 -8.33150 -8.18907 -6.29533 -0.08841 0.67216 1.41332 1.41862 1.54873 1.60133 2.03220 2.41263 2.49911 2.97701 3.05376 3.14739 4.00885 4.08812 4.18094 4.28575 4.33092 4.44983 4.58437 4.71120 4.74585 4.87357 4.89272 5.02474 5.24220 5.29400 5.32097 5.34787 5.47496 5.57504 5.60304 5.80792 5.83397 5.89977 6.27534 6.40124 6.44765 6.85166 6.89357 7.40136 8.93066 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.062701 B = 0.002893 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.453354 B = 9677.597210 C =10092.997761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.282 3.718 3 C 0.002 3.998 4 C -0.130 4.130 5 C -0.067 4.067 6 C -0.174 4.174 7 C 0.207 3.793 8 N -0.745 5.745 9 C 0.134 3.866 10 C -0.119 4.119 11 C -0.095 4.095 12 C 0.020 3.980 13 C -0.541 4.541 14 H 0.062 0.938 15 C -0.004 4.004 16 N -0.936 5.936 17 Si 0.964 3.036 18 H -0.260 1.260 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.156 4.156 22 H 0.144 0.856 23 H 0.159 0.841 24 H 0.137 0.863 25 H 0.404 0.596 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.056 0.944 32 H -0.010 1.010 33 H -0.010 1.010 34 H 0.262 0.738 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.165 2.836 17.074 20.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.032 4.032 3 C -0.002 4.002 4 C -0.153 4.153 5 C -0.085 4.085 6 C -0.198 4.198 7 C 0.103 3.897 8 N -0.374 5.374 9 C 0.010 3.990 10 C -0.157 4.157 11 C -0.133 4.133 12 C -0.017 4.017 13 C -0.579 4.579 14 H 0.080 0.920 15 C -0.201 4.201 16 N -0.576 5.576 17 Si 0.788 3.212 18 H -0.183 1.183 19 H -0.206 1.206 20 H -0.205 1.205 21 C -0.182 4.182 22 H 0.162 0.838 23 H 0.176 0.824 24 H 0.155 0.845 25 H 0.240 0.760 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.008 0.992 33 H 0.008 0.992 34 H 0.071 0.929 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.683 2.808 16.911 21.324 hybrid contribution 1.044 -0.189 -1.139 1.557 sum -11.639 2.619 15.772 19.776 Atomic orbital electron populations 1.81256 1.13440 1.10705 1.09142 1.26028 0.92913 0.92195 0.92107 1.15739 0.82817 1.06076 0.95539 1.21138 0.94672 1.02923 0.96518 1.21128 0.93157 0.95842 0.98419 1.21209 1.01077 1.05977 0.91518 1.17770 0.90483 0.94015 0.87444 1.44827 1.05630 1.79468 1.07499 1.21317 0.79206 1.01590 0.96871 1.21659 0.95897 1.01843 0.96322 1.21347 0.93740 1.00981 0.97277 1.19052 0.94710 0.94631 0.93318 1.21797 0.93509 1.48376 0.94195 0.91957 1.26005 1.03889 0.94936 0.95315 1.70102 1.37489 1.50605 0.99442 0.85417 0.79410 0.77686 0.78659 1.18336 1.20559 1.20547 1.20578 0.92247 1.07566 0.97771 0.83771 0.82365 0.84512 0.76030 0.91468 0.91459 0.92163 0.92169 0.92522 0.92531 0.99204 0.99205 0.92876 0.84900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.92 18.54 19.00 0.35 -11.57 16 2 C 0.28 5.78 15.33 88.33 1.35 7.14 16 3 C 0.00 0.04 5.73 -21.38 -0.12 -0.08 16 4 C -0.13 -1.67 9.75 22.56 0.22 -1.45 16 5 C -0.07 -0.78 10.02 22.21 0.22 -0.56 16 6 C -0.17 -2.63 9.31 22.45 0.21 -2.42 16 7 C 0.21 3.64 6.65 38.17 0.25 3.89 16 8 N -0.75 -13.89 5.73 -339.52 -1.95 -15.84 16 9 C 0.13 2.79 4.91 86.38 0.42 3.22 16 10 C -0.12 -3.34 5.33 30.60 0.16 -3.17 16 11 C -0.10 -3.48 5.15 30.60 0.16 -3.33 16 12 C 0.02 1.01 4.97 29.85 0.15 1.16 16 13 C -0.54 -30.00 9.11 25.60 0.23 -29.76 16 14 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 15 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 16 N -0.94 -56.48 13.29 21.45 0.28 -56.19 16 17 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 18 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 21 C -0.16 -2.64 9.60 22.67 0.22 -2.42 16 22 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 23 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 24 H 0.14 1.86 6.71 -2.91 -0.02 1.84 16 25 H 0.40 6.98 8.48 -92.71 -0.79 6.19 16 26 H 0.07 1.33 7.94 -2.39 -0.02 1.31 16 27 H 0.07 1.33 7.94 -2.38 -0.02 1.31 16 28 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 34 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 35 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -65.86 309.89 4.96 -60.90 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 0.30 Total: 4.78 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 3.94 Total: -27.57 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -1.31 Total: -83.60 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -65.86 4.96 -60.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395366045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.669 kcal (2) G-P(sol) polarization free energy of solvation -65.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds