Wall clock time and date at job start Mon Mar 30 2020 06:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.08999 * 109.47444 * 29.99805 * 3 2 1 5 5 C 1.53008 * 109.47438 * 270.00038 * 3 2 1 6 6 S 1.81397 * 109.46830 * 64.99798 * 5 3 2 7 7 C 1.81400 * 102.99804 * 180.02562 * 6 5 3 8 8 C 1.53010 * 109.47126 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47081 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47039 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99911 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99646 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00323 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99721 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47042 * 59.99502 * 14 12 10 16 16 H 1.48497 * 109.47138 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46620 * 299.99927 * 14 12 10 18 18 C 1.53006 * 109.47213 * 150.00082 * 3 2 1 19 19 C 1.53000 * 117.49512 * 8.74685 * 18 3 2 20 20 C 1.53001 * 117.49671 * 300.08858 * 18 3 2 21 21 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 22 22 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 23 23 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47264 * 185.00576 * 5 3 2 25 25 H 1.09000 * 109.46477 * 305.00136 * 5 3 2 26 26 H 1.08999 * 109.47339 * 300.00303 * 7 6 5 27 27 H 1.09005 * 109.47080 * 60.00294 * 7 6 5 28 28 H 1.08999 * 109.47272 * 300.00360 * 8 7 6 29 29 H 1.09004 * 109.46563 * 60.00630 * 8 7 6 30 30 H 1.09008 * 109.47269 * 300.00456 * 9 8 7 31 31 H 1.08995 * 109.47179 * 60.00174 * 9 8 7 32 32 H 0.97001 * 119.99851 * 180.02562 * 13 12 10 33 33 H 1.09002 * 115.54869 * 154.41597 * 18 3 2 34 34 H 1.08998 * 117.50011 * 359.97438 * 19 18 3 35 35 H 1.08998 * 117.49597 * 145.02200 * 19 18 3 36 36 H 1.09002 * 117.49547 * 214.97634 * 20 18 3 37 37 H 1.08995 * 117.49941 * 359.97248 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7715 -1.4425 6 16 0.6064 1.9634 -2.2535 7 6 1.0532 2.5107 -3.9243 8 6 -0.2182 2.7201 -4.7494 9 6 0.1586 3.1811 -6.1587 10 6 -1.0937 3.3880 -6.9712 11 1 -2.0615 3.2090 -6.5267 12 6 -1.0037 3.8057 -8.2821 13 7 0.1749 4.0242 -8.8233 14 14 -2.5560 4.0629 -9.2890 15 1 -3.4014 5.0969 -8.6400 16 1 -2.1902 4.5090 -10.6574 17 1 -3.3103 2.7863 -9.3702 18 6 3.3589 1.2634 0.7213 19 6 3.9153 -0.1109 1.0991 20 6 3.3638 0.8168 2.1846 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 2.7413 2.7274 -1.4438 25 1 2.8099 1.0321 -1.9815 26 1 1.6061 3.4481 -3.8639 27 1 1.6744 1.7525 -4.4010 28 1 -0.7708 1.7825 -4.8098 29 1 -0.8398 3.4782 -4.2728 30 1 0.7114 4.1187 -6.0987 31 1 0.7800 2.4228 -6.6350 32 1 0.2381 4.3185 -9.7454 33 1 4.0734 2.0322 0.4272 34 1 3.3203 -0.9849 0.8342 35 1 4.9959 -0.2460 1.0540 36 1 4.0819 1.2916 2.8533 37 1 2.4062 0.5534 2.6336 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424163297.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:58 Heat of formation + Delta-G solvation = -44.867389 kcal Electronic energy + Delta-G solvation = -15107.599023 eV Core-core repulsion = 12590.436237 eV Total energy + Delta-G solvation = -2517.162786 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.09727 -36.17989 -34.43813 -32.01704 -31.33210 -27.48282 -26.73025 -24.31433 -23.18080 -22.50920 -20.62396 -20.14851 -16.78897 -16.51641 -16.46632 -15.90971 -15.01582 -14.83873 -14.59067 -14.47924 -13.64227 -13.27498 -13.00592 -12.60749 -12.41903 -11.88458 -11.76602 -11.67123 -11.53915 -11.29550 -10.89211 -10.85514 -10.65361 -10.53114 -10.26843 -9.93483 -9.78493 -9.54987 -9.19812 -9.01816 -8.36613 -7.40258 -6.01701 -4.04381 1.85433 2.86477 3.33417 3.37394 3.40370 3.43496 3.77178 4.43731 4.45280 4.64298 4.74846 4.97517 5.04244 5.19398 5.33688 5.34077 5.36932 5.46400 5.52492 5.53885 5.66514 5.72090 5.74062 5.89295 5.92633 6.08453 6.15260 6.56136 6.72401 7.02322 7.07501 7.63218 7.75894 7.97178 8.39105 9.01897 9.59761 11.09646 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.060457 B = 0.003485 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.024199 B = 8031.471291 C = 8327.853239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.376 6.376 3 C 0.137 3.863 4 H 0.072 0.928 5 C -0.108 4.108 6 S -0.276 6.276 7 C -0.078 4.078 8 C -0.094 4.094 9 C 0.027 3.973 10 C -0.521 4.521 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.894 3.106 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.157 4.157 19 C -0.163 4.163 20 C -0.174 4.174 21 H 0.072 0.928 22 H 0.036 0.964 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.261 0.739 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.911 -6.067 20.077 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.295 6.295 3 C 0.078 3.922 4 H 0.090 0.910 5 C -0.257 4.257 6 S -0.047 6.047 7 C -0.226 4.226 8 C -0.133 4.133 9 C -0.011 4.011 10 C -0.560 4.560 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.536 5.536 14 Si 0.722 3.278 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.177 4.177 19 C -0.200 4.200 20 C -0.211 4.211 21 H 0.090 0.910 22 H 0.055 0.945 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.133 0.867 34 H 0.125 0.875 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.104 -6.347 20.324 21.895 hybrid contribution 0.299 0.683 -1.256 1.461 sum 5.403 -5.663 19.068 20.612 Atomic orbital electron populations 1.23141 0.80558 1.02835 1.01228 1.87857 1.20186 1.26636 1.94819 1.21212 0.93477 0.85374 0.92109 0.91017 1.23988 0.98428 1.04414 0.98875 1.86676 1.13636 1.89080 1.15305 1.23693 1.03521 1.02922 0.92435 1.21455 0.93386 1.01178 0.97280 1.19098 0.97047 0.96428 0.88571 1.21190 0.92893 1.45336 0.96558 0.92606 1.25023 0.96067 0.95458 0.97879 1.69954 1.22979 1.46588 1.14035 0.86628 0.83412 0.78649 0.79156 1.20186 1.21265 1.20182 1.22375 0.97550 1.00178 0.97586 1.22885 1.00407 0.94367 1.02305 1.22935 1.03051 1.04187 0.90965 0.91013 0.94550 0.89806 0.89508 0.89402 0.90719 0.90606 0.92452 0.92493 0.96485 0.96451 0.92901 0.86688 0.87487 0.89112 0.88846 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.57 101.05 1.07 1.28 16 2 O -0.38 -4.60 8.67 -35.23 -0.31 -4.91 16 3 C 0.14 1.53 2.69 -26.72 -0.07 1.45 16 4 H 0.07 0.79 7.79 -51.93 -0.40 0.39 16 5 C -0.11 -1.34 5.62 37.16 0.21 -1.13 16 6 S -0.28 -4.23 18.47 -107.50 -1.99 -6.22 16 7 C -0.08 -1.38 5.94 37.16 0.22 -1.16 16 8 C -0.09 -1.99 5.16 -26.73 -0.14 -2.13 16 9 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 10 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 14 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C -0.16 -1.47 5.71 -90.62 -0.52 -1.98 16 19 C -0.16 -1.47 9.88 -26.69 -0.26 -1.73 16 20 C -0.17 -1.44 10.19 -26.69 -0.27 -1.72 16 21 H 0.07 0.92 4.87 -37.58 -0.18 0.74 16 22 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 23 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 26 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 27 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.12 0.95 8.11 -51.93 -0.42 0.52 16 34 H 0.11 1.10 7.06 -51.93 -0.37 0.73 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 316.25 15.07 4.77 4.77 Total: -1.00 -30.02 316.25 -8.53 -38.56 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -6.41 Total: -2.43 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -0.31 Total: -20.22 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.74 Total: -26.32 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.31 Total: -4.91 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -4.23 SS G_CDS: -1.99 Total: -6.22 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.02 -8.53 -38.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424163297.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.311 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds