Wall clock time and date at job start Mon Mar 30 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.08999 * 109.47444 * 29.99805 * 3 2 1 5 5 C 1.53008 * 109.47438 * 270.00038 * 3 2 1 6 6 S 1.81397 * 109.46830 * 64.99798 * 5 3 2 7 7 C 1.81400 * 102.99804 * 180.02562 * 6 5 3 8 8 C 1.53010 * 109.47126 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47081 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47039 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99911 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99646 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00323 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99721 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47042 * 59.99502 * 14 12 10 16 16 H 1.48497 * 109.47138 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46620 * 299.99927 * 14 12 10 18 18 C 1.53006 * 109.47213 * 150.00082 * 3 2 1 19 19 C 1.53000 * 117.49512 * 8.74685 * 18 3 2 20 20 C 1.53001 * 117.49671 * 300.08858 * 18 3 2 21 21 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 22 22 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 23 23 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47264 * 185.00576 * 5 3 2 25 25 H 1.09000 * 109.46477 * 305.00136 * 5 3 2 26 26 H 1.08999 * 109.47339 * 300.00303 * 7 6 5 27 27 H 1.09005 * 109.47080 * 60.00294 * 7 6 5 28 28 H 1.08999 * 109.47272 * 300.00360 * 8 7 6 29 29 H 1.09004 * 109.46563 * 60.00630 * 8 7 6 30 30 H 1.09008 * 109.47269 * 300.00456 * 9 8 7 31 31 H 1.08995 * 109.47179 * 60.00174 * 9 8 7 32 32 H 0.97001 * 119.99851 * 180.02562 * 13 12 10 33 33 H 1.09002 * 115.54869 * 154.41597 * 18 3 2 34 34 H 1.08998 * 117.50011 * 359.97438 * 19 18 3 35 35 H 1.08998 * 117.49597 * 145.02200 * 19 18 3 36 36 H 1.09002 * 117.49547 * 214.97634 * 20 18 3 37 37 H 1.08995 * 117.49941 * 359.97248 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7715 -1.4425 6 16 0.6064 1.9634 -2.2535 7 6 1.0532 2.5107 -3.9243 8 6 -0.2182 2.7201 -4.7494 9 6 0.1586 3.1811 -6.1587 10 6 -1.0937 3.3880 -6.9712 11 1 -2.0615 3.2090 -6.5267 12 6 -1.0037 3.8057 -8.2821 13 7 0.1749 4.0242 -8.8233 14 14 -2.5560 4.0629 -9.2890 15 1 -3.4014 5.0969 -8.6400 16 1 -2.1902 4.5090 -10.6574 17 1 -3.3103 2.7863 -9.3702 18 6 3.3589 1.2634 0.7213 19 6 3.9153 -0.1109 1.0991 20 6 3.3638 0.8168 2.1846 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 2.7413 2.7274 -1.4438 25 1 2.8099 1.0321 -1.9815 26 1 1.6061 3.4481 -3.8639 27 1 1.6744 1.7525 -4.4010 28 1 -0.7708 1.7825 -4.8098 29 1 -0.8398 3.4782 -4.2728 30 1 0.7114 4.1187 -6.0987 31 1 0.7800 2.4228 -6.6350 32 1 0.2381 4.3185 -9.7454 33 1 4.0734 2.0322 0.4272 34 1 3.3203 -0.9849 0.8342 35 1 4.9959 -0.2460 1.0540 36 1 4.0819 1.2916 2.8533 37 1 2.4062 0.5534 2.6336 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424163297.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:57 Heat of formation + Delta-G solvation = -60.695741 kcal Electronic energy + Delta-G solvation = -15108.285391 eV Core-core repulsion = 12590.436237 eV Total energy + Delta-G solvation = -2517.849155 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.92930 -36.95206 -36.37005 -34.05770 -32.25883 -29.42914 -27.62370 -25.66411 -24.71375 -23.16454 -22.10177 -21.29634 -18.58167 -17.66430 -17.33298 -17.15447 -16.57677 -16.21377 -15.95738 -15.59830 -14.76409 -14.45778 -14.37057 -14.08505 -13.61479 -13.56571 -13.27172 -12.82611 -12.73069 -12.47690 -12.45321 -12.25967 -12.15294 -11.67185 -11.46954 -11.38092 -11.26213 -10.97832 -10.87286 -10.57590 -10.30119 -8.62520 -8.22494 -6.34084 0.64824 1.39534 1.42709 1.50749 1.61959 2.40046 2.65538 3.01469 3.10683 3.63912 3.87923 3.98829 4.01881 4.09567 4.17029 4.23898 4.36976 4.48768 4.55662 4.58181 4.67651 4.79875 4.82198 4.85538 4.95820 4.99504 5.05409 5.11454 5.26147 5.38760 5.46475 5.65755 5.80057 6.19622 6.20373 6.81429 7.35258 8.89179 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.060457 B = 0.003485 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.024199 B = 8031.471291 C = 8327.853239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.388 6.388 3 C 0.138 3.862 4 H 0.074 0.926 5 C -0.100 4.100 6 S -0.277 6.277 7 C -0.078 4.078 8 C -0.079 4.079 9 C 0.031 3.969 10 C -0.547 4.547 11 H 0.059 0.941 12 C 0.001 3.999 13 N -0.933 5.933 14 Si 0.966 3.034 15 H -0.266 1.266 16 H -0.281 1.281 17 H -0.267 1.267 18 C -0.164 4.164 19 C -0.168 4.168 20 C -0.164 4.164 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.095 0.905 24 H 0.102 0.898 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.055 0.945 30 H -0.004 1.004 31 H -0.006 1.006 32 H 0.265 0.735 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.633 -6.123 21.364 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.307 6.307 3 C 0.078 3.922 4 H 0.092 0.908 5 C -0.249 4.249 6 S -0.048 6.048 7 C -0.226 4.226 8 C -0.118 4.118 9 C -0.008 4.008 10 C -0.585 4.585 11 H 0.078 0.922 12 C -0.197 4.197 13 N -0.573 5.573 14 Si 0.790 3.210 15 H -0.191 1.191 16 H -0.206 1.206 17 H -0.192 1.192 18 C -0.183 4.183 19 C -0.205 4.205 20 C -0.201 4.201 21 H 0.072 0.928 22 H 0.068 0.932 23 H 0.114 0.886 24 H 0.120 0.880 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.014 0.986 31 H 0.013 0.987 32 H 0.074 0.926 33 H 0.147 0.853 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.818 -6.407 21.618 23.057 hybrid contribution 0.430 0.665 -1.574 1.762 sum 5.249 -5.742 20.044 21.501 Atomic orbital electron populations 1.23179 0.80174 1.03617 1.00882 1.87860 1.20689 1.27349 1.94772 1.21292 0.94615 0.84968 0.91277 0.90806 1.24116 0.96332 1.05252 0.99178 1.86717 1.16046 1.88807 1.13248 1.23440 1.01555 1.03293 0.94278 1.21153 0.94961 1.00617 0.95070 1.18979 0.95756 0.94743 0.91334 1.21645 0.93847 1.45560 0.97469 0.92233 1.25984 0.99648 0.94909 0.99187 1.70082 1.25376 1.47265 1.14551 0.85485 0.79074 0.79038 0.77383 1.19103 1.20649 1.19177 1.22410 0.96773 1.00812 0.98341 1.22900 1.00992 0.93700 1.02884 1.23004 1.03241 1.03292 0.90575 0.92769 0.93189 0.88609 0.87961 0.89722 0.90403 0.90773 0.92759 0.92577 0.98589 0.98727 0.92644 0.85320 0.89009 0.87812 0.87049 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.57 113.37 1.20 1.58 16 2 O -0.39 -8.95 8.67 -148.98 -1.29 -10.24 16 3 C 0.14 2.81 2.69 30.60 0.08 2.89 16 4 H 0.07 1.48 7.79 -2.39 -0.02 1.46 16 5 C -0.10 -2.32 5.62 71.98 0.40 -1.92 16 6 S -0.28 -8.25 18.47 -56.49 -1.04 -9.30 16 7 C -0.08 -2.76 5.94 71.99 0.43 -2.33 16 8 C -0.08 -3.40 5.16 30.60 0.16 -3.24 16 9 C 0.03 1.64 4.97 29.85 0.15 1.79 16 10 C -0.55 -31.73 9.11 25.60 0.23 -31.50 16 11 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 12 C 0.00 0.04 5.46 84.65 0.46 0.50 16 13 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 14 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 18 C -0.16 -2.68 5.71 -10.79 -0.06 -2.74 16 19 C -0.17 -2.71 9.88 30.62 0.30 -2.41 16 20 C -0.16 -2.32 10.19 30.62 0.31 -2.01 16 21 H 0.05 1.34 4.87 -11.51 -0.06 1.28 16 22 H 0.05 0.89 8.08 -2.39 -0.02 0.87 16 23 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 24 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 31 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.26 15.22 8.31 -92.71 -0.77 14.44 16 33 H 0.13 1.75 8.11 -2.39 -0.02 1.73 16 34 H 0.09 1.78 7.06 -2.39 -0.02 1.76 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -64.10 316.25 4.61 -59.49 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.96 Total: 9.65 kcal Atomic # 6 Polarization: -43.04 SS G_CDS: 3.67 Total: -39.37 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.28 Total: -56.87 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -1.29 Total: -10.24 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.04 Total: -9.30 kcal Total: -64.10 4.61 -59.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424163297.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.202 kcal (2) G-P(sol) polarization free energy of solvation -64.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds